Wall clock time and date at job start Tue Mar 31 2020 21:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.51665 * 2 1 4 4 C 1.53283 * 109.51172 * 239.89209 * 2 1 3 5 5 N 1.47174 * 108.56378 * 187.02405 * 4 2 1 6 6 C 1.34776 * 121.07863 * 231.20966 * 5 4 2 7 7 O 1.21276 * 119.99952 * 184.91535 * 6 5 4 8 8 C 1.50700 * 119.99967 * 4.91234 * 6 5 4 9 9 C 1.52995 * 109.47406 * 206.24053 * 8 6 5 10 10 C 1.52994 * 109.47463 * 180.02562 * 9 8 6 11 11 C 1.53004 * 109.47124 * 60.00079 * 10 9 8 12 12 C 1.53005 * 109.47088 * 299.99926 * 11 10 9 13 13 C 1.53001 * 109.46607 * 60.00034 * 12 11 10 14 14 C 1.47334 * 117.83784 * 51.23807 * 5 4 2 15 15 C 1.52358 * 108.41387 * 310.81919 * 14 5 4 16 16 C 1.54348 * 110.41902 * 173.60599 * 15 14 5 17 17 C 1.54475 * 102.96746 * 152.15156 * 16 15 14 18 18 N 1.47092 * 107.28531 * 338.90338 * 17 16 15 19 19 C 1.36943 * 125.63196 * 178.84898 * 18 17 16 20 20 H 1.07999 * 119.99787 * 178.27571 * 19 18 17 21 21 C 1.38812 * 119.99500 * 358.27072 * 19 18 17 22 22 N 1.31617 * 119.99807 * 209.30450 * 21 19 18 23 23 Si 1.86798 * 120.00187 * 29.30351 * 21 19 18 24 24 H 1.48501 * 109.46995 * 274.59807 * 23 21 19 25 25 H 1.48496 * 109.47324 * 34.59900 * 23 21 19 26 26 H 1.48499 * 109.47119 * 154.59888 * 23 21 19 27 27 C 1.47565 * 108.73974 * 358.58207 * 18 17 16 28 28 O 1.41885 * 111.45476 * 50.06229 * 15 14 5 29 29 H 1.08992 * 109.47203 * 180.10379 * 1 2 3 30 30 H 1.09000 * 109.46803 * 300.11203 * 1 2 3 31 31 H 1.09001 * 109.46700 * 60.10441 * 1 2 3 32 32 H 1.08993 * 109.61941 * 67.30569 * 4 2 1 33 33 H 1.08996 * 109.61824 * 306.74496 * 4 2 1 34 34 H 1.09001 * 109.47393 * 326.24738 * 8 6 5 35 35 H 1.09003 * 109.47005 * 300.00327 * 9 8 6 36 36 H 1.08999 * 109.47004 * 59.99884 * 9 8 6 37 37 H 1.09003 * 109.47080 * 300.00040 * 10 9 8 38 38 H 1.09000 * 109.47464 * 179.97438 * 10 9 8 39 39 H 1.09009 * 109.47169 * 180.02562 * 11 10 9 40 40 H 1.08993 * 109.47297 * 60.00097 * 11 10 9 41 41 H 1.08993 * 109.47192 * 300.00236 * 12 11 10 42 42 H 1.09000 * 109.47011 * 179.97438 * 12 11 10 43 43 H 1.09006 * 109.46816 * 179.97438 * 13 12 11 44 44 H 1.09003 * 109.47307 * 60.00120 * 13 12 11 45 45 H 1.09003 * 109.67254 * 191.08579 * 14 5 4 46 46 H 1.08998 * 109.67744 * 70.55329 * 14 5 4 47 47 H 1.09001 * 110.73381 * 270.72385 * 16 15 14 48 48 H 1.09003 * 110.73265 * 33.85236 * 16 15 14 49 49 H 1.08996 * 110.01203 * 219.41269 * 17 16 15 50 50 H 1.09001 * 109.75928 * 98.24676 * 17 16 15 51 51 H 0.97002 * 120.00200 * 354.95425 * 22 21 19 52 52 H 1.09003 * 110.38049 * 142.41387 * 27 18 17 53 53 H 1.09009 * 110.37738 * 264.76052 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0420 -0.7248 -1.2499 5 7 3.5036 -0.8619 -1.1463 6 6 4.3119 -0.4739 -2.1525 7 8 5.5056 -0.6771 -2.0842 8 6 3.7324 0.2125 -3.3625 9 6 4.6392 -0.0313 -4.5704 10 6 4.0512 0.6660 -5.7987 11 6 3.9501 2.1692 -5.5322 12 6 3.0431 2.4131 -4.3243 13 6 3.6312 1.7157 -3.0960 14 6 4.0545 -1.4377 0.0930 15 6 3.4227 -0.7204 1.2794 16 6 3.8454 -1.3930 2.6027 17 6 3.7731 -0.2326 3.6198 18 7 3.8532 1.0226 2.8573 19 6 3.8010 2.2837 3.3887 20 1 3.8966 3.1454 2.7447 21 6 3.6251 2.4542 4.7550 22 7 3.0175 3.5289 5.2112 23 14 4.2507 1.1584 5.9462 24 1 3.2280 0.0927 6.1003 25 1 5.5066 0.5668 5.4194 26 1 4.5146 1.7856 7.2661 27 6 4.0056 0.6988 1.4257 28 8 2.0090 -0.6769 1.1666 29 1 -0.3633 -1.0276 0.0019 30 1 -0.3633 0.5156 0.8890 31 1 -0.3633 0.5122 -0.8909 32 1 1.7909 -0.1448 -2.1379 33 1 1.5853 -1.7124 -1.3131 34 1 2.7395 -0.1882 -3.5668 35 1 5.6321 0.3694 -4.3661 36 1 4.7117 -1.1023 -4.7600 37 1 3.0583 0.2656 -6.0032 38 1 4.6976 0.4926 -6.6591 39 1 3.5307 2.6660 -6.4072 40 1 4.9430 2.5696 -5.3277 41 1 2.0502 2.0127 -4.5288 42 1 2.9714 3.4840 -4.1341 43 1 2.9853 1.8898 -2.2353 44 1 4.6242 2.1161 -2.8915 45 1 5.1355 -1.2988 0.1133 46 1 3.8198 -2.5011 0.1396 47 1 3.1499 -2.1884 2.8707 48 1 4.8622 -1.7791 2.5317 49 1 4.6077 -0.2960 4.3180 50 1 2.8289 -0.2767 4.1627 51 1 2.7579 4.2358 4.5997 52 1 3.4433 1.4049 0.8148 53 1 5.0588 0.7073 1.1446 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071131428.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:53 Heat of formation + Delta-G solvation = -81.544366 kcal Electronic energy + Delta-G solvation = -32026.591218 eV Core-core repulsion = 28090.548982 eV Total energy + Delta-G solvation = -3936.042236 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.08625 -40.61545 -38.54601 -38.14524 -35.88434 -35.04010 -33.42018 -32.23191 -31.71633 -31.24469 -30.17597 -27.96271 -27.22345 -25.48667 -23.91497 -23.53988 -23.22821 -22.51541 -21.17054 -20.74854 -19.92692 -19.59495 -18.33756 -18.07862 -17.43961 -17.12314 -16.36887 -16.10077 -16.05180 -15.82398 -15.49359 -15.45000 -15.09673 -15.07163 -14.97072 -14.75059 -14.28571 -13.82204 -13.71256 -13.59686 -13.32952 -13.21411 -13.17649 -13.09826 -13.01206 -12.97823 -12.85614 -12.51741 -12.25567 -12.21032 -12.06238 -11.99704 -11.74504 -11.68066 -11.54983 -11.34200 -11.10794 -11.08522 -11.00118 -10.62371 -10.60418 -9.60621 -9.17532 -8.74402 -5.42467 1.36819 1.46301 1.48707 1.66771 1.79246 2.48723 2.53110 2.92282 3.24864 3.34603 3.49927 3.58512 3.64751 3.72373 3.72611 3.82657 3.95909 4.07548 4.10712 4.20892 4.24532 4.25411 4.31259 4.35525 4.45463 4.49319 4.53629 4.54216 4.55309 4.59158 4.62441 4.70630 4.71107 4.80779 4.84006 4.92321 4.95798 5.02436 5.07949 5.09632 5.14836 5.20382 5.21825 5.25477 5.29930 5.31084 5.36814 5.47184 5.52965 6.03397 6.24770 6.27447 6.78058 7.02901 7.42187 8.08362 8.78308 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015603 B = 0.003522 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.043022 B = 7947.633255 C = 8202.591150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.062 3.938 3 H 0.037 0.963 4 C 0.083 3.917 5 N -0.615 5.615 6 C 0.514 3.486 7 O -0.581 6.581 8 C -0.096 4.096 9 C -0.100 4.100 10 C -0.111 4.111 11 C -0.123 4.123 12 C -0.111 4.111 13 C -0.109 4.109 14 C 0.104 3.896 15 C 0.105 3.895 16 C -0.104 4.104 17 C 0.097 3.903 18 N -0.625 5.625 19 C -0.329 4.329 20 H 0.040 0.960 21 C -0.073 4.073 22 N -0.946 5.946 23 Si 1.110 2.890 24 H -0.267 1.267 25 H -0.272 1.272 26 H -0.304 1.304 27 C 0.123 3.877 28 O -0.366 6.366 29 H 0.081 0.919 30 H 0.044 0.956 31 H 0.103 0.897 32 H 0.123 0.877 33 H 0.104 0.896 34 H 0.123 0.877 35 H 0.047 0.953 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.048 0.952 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.042 0.958 45 H 0.085 0.915 46 H 0.103 0.897 47 H 0.111 0.889 48 H 0.107 0.893 49 H 0.038 0.962 50 H 0.030 0.970 51 H 0.248 0.752 52 H 0.029 0.971 53 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.038 -12.687 -23.608 27.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.004 3.996 3 H 0.055 0.945 4 C -0.039 4.039 5 N -0.348 5.348 6 C 0.305 3.695 7 O -0.461 6.461 8 C -0.117 4.117 9 C -0.138 4.138 10 C -0.148 4.148 11 C -0.160 4.160 12 C -0.149 4.149 13 C -0.147 4.147 14 C -0.019 4.019 15 C 0.064 3.936 16 C -0.141 4.141 17 C -0.027 4.027 18 N -0.352 5.352 19 C -0.457 4.457 20 H 0.058 0.942 21 C -0.267 4.267 22 N -0.589 5.589 23 Si 0.937 3.063 24 H -0.193 1.193 25 H -0.199 1.199 26 H -0.232 1.232 27 C -0.003 4.003 28 O -0.285 6.285 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.121 0.879 32 H 0.141 0.859 33 H 0.122 0.878 34 H 0.141 0.859 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.067 0.933 41 H 0.105 0.895 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.061 0.939 45 H 0.104 0.896 46 H 0.121 0.879 47 H 0.129 0.871 48 H 0.126 0.874 49 H 0.055 0.945 50 H 0.048 0.952 51 H 0.057 0.943 52 H 0.047 0.953 53 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -4.484 -13.194 -21.845 25.911 hybrid contribution 0.584 1.661 -1.123 2.088 sum -3.900 -11.533 -22.967 25.995 Atomic orbital electron populations 1.21705 0.90076 1.04102 1.03294 1.22704 0.97094 0.94758 0.85022 0.94545 1.22749 0.78316 1.03512 0.99355 1.48350 1.08019 1.62223 1.16165 1.21397 0.86097 0.77271 0.84774 1.90659 1.17277 1.57325 1.80835 1.21415 1.02188 0.96251 0.91867 1.21375 0.97998 1.00937 0.93503 1.21522 1.02114 0.94889 0.96323 1.21588 0.99565 0.96570 0.98301 1.21514 0.99900 1.00259 0.93200 1.21474 1.00984 0.92619 0.99591 1.21970 0.99457 0.98387 0.82089 1.22102 0.82085 0.93862 0.95588 1.22543 1.03681 0.96894 0.91032 1.21971 0.98630 0.86267 0.95809 1.44813 1.86789 1.01266 1.02327 1.19832 1.49573 0.83027 0.93281 0.94229 1.26992 0.97807 1.04487 0.97430 1.71034 1.37849 1.11581 1.38483 0.83321 0.77139 0.72961 0.72926 1.19294 1.19860 1.23224 1.22014 0.96633 0.95967 0.85684 1.87804 1.19255 1.76879 1.44559 0.89988 0.93683 0.87870 0.85913 0.87778 0.85877 0.93410 0.91652 0.89927 0.90903 0.90147 0.93303 0.89506 0.91589 0.92242 0.93914 0.89624 0.87923 0.87094 0.87442 0.94468 0.95231 0.94306 0.95270 0.96684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 9.57 71.98 0.69 -1.94 16 2 C 0.06 1.61 3.20 30.69 0.10 1.70 16 3 H 0.04 1.17 6.25 -2.39 -0.01 1.16 16 4 C 0.08 1.51 5.73 86.35 0.49 2.00 16 5 N -0.62 -15.28 2.95 -818.67 -2.42 -17.70 16 6 C 0.51 13.84 6.80 87.66 0.60 14.44 16 7 O -0.58 -20.55 15.63 -3.02 -0.05 -20.59 16 8 C -0.10 -1.80 1.72 -11.54 -0.02 -1.82 16 9 C -0.10 -1.81 4.75 30.59 0.15 -1.66 16 10 C -0.11 -1.34 5.92 30.59 0.18 -1.15 16 11 C -0.12 -1.58 5.92 30.60 0.18 -1.40 16 12 C -0.11 -1.54 5.92 30.60 0.18 -1.36 16 13 C -0.11 -2.16 5.10 30.60 0.16 -2.00 16 14 C 0.10 2.88 5.28 86.01 0.45 3.33 16 15 C 0.11 3.52 0.83 -10.17 -0.01 3.51 16 16 C -0.10 -3.35 6.12 31.55 0.19 -3.15 16 17 C 0.10 4.33 4.84 86.77 0.42 4.75 16 18 N -0.62 -32.68 3.38 -692.70 -2.34 -35.02 16 19 C -0.33 -20.31 10.45 84.03 0.88 -19.43 16 20 H 0.04 2.65 8.06 -2.91 -0.02 2.62 16 21 C -0.07 -4.52 5.45 84.86 0.46 -4.06 16 22 N -0.95 -62.54 13.70 21.65 0.30 -62.24 16 23 Si 1.11 55.77 24.64 68.60 1.69 57.46 16 24 H -0.27 -12.30 6.45 99.48 0.64 -11.66 16 25 H -0.27 -12.65 6.24 99.48 0.62 -12.03 16 26 H -0.30 -15.33 7.11 99.48 0.71 -14.62 16 27 C 0.12 5.39 6.18 86.55 0.53 5.92 16 28 O -0.37 -12.08 9.93 -148.95 -1.48 -13.56 16 29 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.12 1.51 5.40 -2.39 -0.01 1.50 16 33 H 0.10 1.45 8.14 -2.39 -0.02 1.44 16 34 H 0.12 1.49 6.27 -2.39 -0.01 1.47 16 35 H 0.05 1.12 7.86 -2.39 -0.02 1.10 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.06 1.27 8.02 -2.38 -0.02 1.25 16 44 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.09 2.68 6.90 -2.39 -0.02 2.66 16 46 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 47 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 48 H 0.11 2.92 7.99 -2.39 -0.02 2.90 16 49 H 0.04 1.68 4.23 -2.39 -0.01 1.67 16 50 H 0.03 1.41 6.80 -2.39 -0.02 1.40 16 51 H 0.25 16.47 8.73 -92.71 -0.81 15.66 16 52 H 0.03 1.35 6.09 -2.39 -0.01 1.33 16 53 H 0.02 0.70 7.82 -2.38 -0.02 0.68 16 Total: -1.00 -81.61 388.23 2.03 -79.58 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.69 Total: 14.39 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 5.64 Total: -2.31 kcal Atomic # 7 Polarization: -110.50 SS G_CDS: -4.46 Total: -114.96 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -1.53 Total: -34.16 kcal Atomic # 14 Polarization: 55.77 SS G_CDS: 1.69 Total: 57.46 kcal Total: -81.61 2.03 -79.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071131428.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.960 kcal (2) G-P(sol) polarization free energy of solvation -81.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds