Wall clock time and date at job start Tue Mar 31 2020 21:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.51797 * 2 1 4 4 C 1.53280 * 109.51217 * 120.10333 * 2 1 3 5 5 N 1.47163 * 108.54440 * 172.80284 * 4 2 1 6 6 C 1.34773 * 121.06105 * 128.90673 * 5 4 2 7 7 O 1.21281 * 119.99997 * 356.37892 * 6 5 4 8 8 C 1.50703 * 119.99837 * 176.37252 * 6 5 4 9 9 C 1.52998 * 109.47269 * 294.59898 * 8 6 5 10 10 C 1.53003 * 109.46920 * 180.02562 * 9 8 6 11 11 C 1.53003 * 109.47212 * 59.99573 * 10 9 8 12 12 C 1.52991 * 109.47322 * 299.99900 * 11 10 9 13 13 C 1.53003 * 109.46904 * 174.59446 * 8 6 5 14 14 C 1.47315 * 117.87712 * 308.88657 * 5 4 2 15 15 C 1.52514 * 108.38163 * 49.41873 * 14 5 4 16 16 C 1.54516 * 110.05878 * 72.02146 * 15 14 5 17 17 C 1.55021 * 101.51497 * 153.10086 * 16 15 14 18 18 N 1.47494 * 104.90368 * 323.62185 * 17 16 15 19 19 C 1.36936 * 125.66125 * 204.03069 * 18 17 16 20 20 H 1.08002 * 120.00343 * 29.33841 * 19 18 17 21 21 C 1.38811 * 119.99641 * 209.34201 * 19 18 17 22 22 N 1.31620 * 120.00096 * 202.60192 * 21 19 18 23 23 Si 1.86805 * 120.00117 * 22.59942 * 21 19 18 24 24 H 1.48493 * 109.47181 * 274.51566 * 23 21 19 25 25 H 1.48506 * 109.46991 * 34.51384 * 23 21 19 26 26 H 1.48495 * 109.47010 * 154.51518 * 23 21 19 27 27 C 1.47182 * 108.67231 * 24.28919 * 18 17 16 28 28 O 1.42066 * 111.09078 * 309.51029 * 15 14 5 29 29 H 1.08997 * 109.46557 * 299.90217 * 1 2 3 30 30 H 1.09000 * 109.46879 * 59.89640 * 1 2 3 31 31 H 1.08998 * 109.47362 * 179.89987 * 1 2 3 32 32 H 1.08998 * 109.62991 * 53.08300 * 4 2 1 33 33 H 1.09003 * 109.62516 * 292.51609 * 4 2 1 34 34 H 1.08997 * 109.46854 * 54.59483 * 8 6 5 35 35 H 1.09007 * 109.47041 * 299.99515 * 9 8 6 36 36 H 1.08996 * 109.47484 * 60.00167 * 9 8 6 37 37 H 1.08997 * 109.46896 * 299.99397 * 10 9 8 38 38 H 1.09002 * 109.47287 * 179.97438 * 10 9 8 39 39 H 1.09005 * 109.47043 * 179.97438 * 11 10 9 40 40 H 1.09003 * 109.46935 * 60.00670 * 11 10 9 41 41 H 1.08994 * 109.47547 * 300.00197 * 12 11 10 42 42 H 1.08996 * 109.47279 * 179.97438 * 12 11 10 43 43 H 1.09002 * 109.46989 * 300.00416 * 13 8 6 44 44 H 1.08994 * 109.46971 * 60.00690 * 13 8 6 45 45 H 1.08998 * 109.67960 * 289.68996 * 14 5 4 46 46 H 1.09005 * 109.70482 * 169.15952 * 14 5 4 47 47 H 1.08998 * 111.01252 * 35.04340 * 16 15 14 48 48 H 1.08994 * 111.04777 * 271.17006 * 16 15 14 49 49 H 1.09005 * 110.35608 * 204.76732 * 17 16 15 50 50 H 1.08997 * 110.45058 * 82.52492 * 17 16 15 51 51 H 0.96993 * 119.99977 * 180.02562 * 22 21 19 52 52 H 1.09001 * 109.91109 * 117.59543 * 27 18 17 53 53 H 1.09002 * 109.90863 * 238.85840 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0420 -0.7246 1.2499 5 7 3.5030 -0.8652 1.1439 6 6 4.3134 -0.4800 2.1495 7 8 3.8468 0.0513 3.1348 8 6 5.7995 -0.7098 2.0497 9 6 6.0838 -2.2131 2.0413 10 6 7.5926 -2.4462 1.9406 11 6 8.2894 -1.8020 3.1408 12 6 8.0052 -0.2988 3.1491 13 6 6.4968 -0.0655 3.2495 14 6 4.0514 -1.4409 -0.0963 15 6 3.4234 -0.7156 -1.2819 16 6 3.9925 0.7170 -1.3887 17 6 3.8337 1.0008 -2.9044 18 7 4.1108 -0.2895 -3.5630 19 6 4.5416 -0.4513 -4.8528 20 1 5.1421 0.3143 -5.3216 21 6 4.2066 -1.5992 -5.5576 22 7 4.9403 -1.9804 -6.5816 23 14 2.7143 -2.6031 -5.0526 24 1 3.0988 -3.5569 -3.9814 25 1 1.6536 -1.6941 -4.5487 26 1 2.2042 -3.3563 -6.2264 27 6 3.8414 -1.3746 -2.6058 28 8 2.0080 -0.6775 -1.1664 29 1 -0.3632 0.5123 0.8909 30 1 -0.3633 0.5154 -0.8891 31 1 -0.3634 -1.0276 -0.0018 32 1 1.5830 -1.7111 1.3150 33 1 1.7936 -0.1431 2.1378 34 1 6.1750 -0.2639 1.1287 35 1 5.7083 -2.6590 2.9624 36 1 5.5870 -2.6721 1.1865 37 1 7.9684 -2.0003 1.0198 38 1 7.7952 -3.5172 1.9351 39 1 9.3643 -1.9685 3.0692 40 1 7.9136 -2.2481 4.0616 41 1 8.3810 0.1472 2.2284 42 1 8.5012 0.1600 4.0044 43 1 6.2942 1.0055 3.2555 44 1 6.1214 -0.5114 4.1705 45 1 3.8106 -2.5028 -0.1459 46 1 5.1332 -1.3085 -0.1159 47 1 5.0414 0.7439 -1.0937 48 1 3.4038 1.4172 -0.7962 49 1 4.5535 1.7532 -3.2267 50 1 2.8183 1.3291 -3.1261 51 1 4.7059 -2.7823 -7.0744 52 1 3.0359 -2.0072 -2.9788 53 1 4.7429 -1.9682 -2.4542 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071131429.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:57 Heat of formation + Delta-G solvation = -80.639643 kcal Electronic energy + Delta-G solvation = -32117.968061 eV Core-core repulsion = 28181.965057 eV Total energy + Delta-G solvation = -3936.003004 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.14697 -40.58712 -38.63472 -37.94820 -36.02716 -34.78503 -33.52349 -32.08971 -31.64567 -31.27564 -30.26868 -27.89193 -27.29492 -25.60099 -24.19441 -23.51203 -23.06801 -22.21009 -21.20266 -20.65532 -20.06196 -19.03175 -18.43071 -18.11360 -17.45945 -16.97176 -16.53532 -16.32997 -15.93919 -15.71735 -15.44636 -15.11075 -15.04096 -14.94690 -14.80863 -14.50743 -14.32959 -14.03470 -13.84153 -13.62007 -13.50136 -13.28884 -13.18373 -13.13457 -13.00999 -12.89015 -12.68275 -12.42824 -12.36756 -12.25138 -12.19175 -12.01419 -11.86952 -11.70455 -11.55476 -11.40939 -11.34707 -11.01450 -10.96852 -10.69939 -10.62814 -9.61801 -8.96698 -8.23123 -5.54584 1.27660 1.38765 1.49521 1.51740 1.75490 2.38885 2.48285 3.01287 3.21202 3.27296 3.51852 3.62156 3.70128 3.71353 3.76669 3.84181 3.95136 4.08870 4.12789 4.25287 4.26292 4.29966 4.34714 4.41053 4.44132 4.49904 4.57100 4.58810 4.59143 4.60880 4.67295 4.70255 4.79155 4.81577 4.93732 4.95131 4.97220 5.02097 5.11184 5.12584 5.18144 5.21232 5.25309 5.25992 5.29844 5.36279 5.40721 5.56446 5.73245 6.09559 6.21748 6.25011 6.74445 7.02378 7.49365 8.10898 8.97163 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011587 B = 0.004336 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.021326 B = 6456.614088 C = 7890.165831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.067 3.933 3 H 0.065 0.935 4 C 0.085 3.915 5 N -0.609 5.609 6 C 0.524 3.476 7 O -0.574 6.574 8 C -0.104 4.104 9 C -0.112 4.112 10 C -0.118 4.118 11 C -0.120 4.120 12 C -0.117 4.117 13 C -0.093 4.093 14 C 0.098 3.902 15 C 0.101 3.899 16 C -0.138 4.138 17 C 0.129 3.871 18 N -0.621 5.621 19 C -0.239 4.239 20 H 0.059 0.941 21 C -0.017 4.017 22 N -0.945 5.945 23 Si 0.939 3.061 24 H -0.266 1.266 25 H -0.281 1.281 26 H -0.307 1.307 27 C 0.133 3.867 28 O -0.379 6.379 29 H 0.097 0.903 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.087 0.913 46 H 0.119 0.881 47 H 0.092 0.908 48 H 0.087 0.913 49 H 0.051 0.949 50 H 0.018 0.982 51 H 0.265 0.735 52 H 0.020 0.980 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.801 0.867 22.809 22.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.009 3.991 3 H 0.083 0.917 4 C -0.037 4.037 5 N -0.341 5.341 6 C 0.314 3.686 7 O -0.454 6.454 8 C -0.125 4.125 9 C -0.149 4.149 10 C -0.155 4.155 11 C -0.157 4.157 12 C -0.154 4.154 13 C -0.131 4.131 14 C -0.025 4.025 15 C 0.060 3.940 16 C -0.176 4.176 17 C 0.005 3.995 18 N -0.348 5.348 19 C -0.368 4.368 20 H 0.077 0.923 21 C -0.214 4.214 22 N -0.590 5.590 23 Si 0.769 3.231 24 H -0.193 1.193 25 H -0.207 1.207 26 H -0.235 1.235 27 C 0.008 3.992 28 O -0.299 6.299 29 H 0.116 0.884 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.105 0.895 46 H 0.137 0.863 47 H 0.111 0.889 48 H 0.105 0.895 49 H 0.070 0.930 50 H 0.036 0.964 51 H 0.074 0.926 52 H 0.037 0.963 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.487 0.959 23.005 23.030 hybrid contribution -0.852 -0.394 -0.541 1.084 sum -0.365 0.564 22.465 22.475 Atomic orbital electron populations 1.21724 0.90695 1.03557 1.03577 1.22703 0.96739 0.95541 0.84097 0.91749 1.22355 0.79792 1.02273 0.99320 1.48211 1.06986 1.62461 1.16472 1.21144 0.89887 0.76197 0.81332 1.90649 1.77862 1.44441 1.32406 1.21415 0.89455 0.99409 1.02266 1.21625 0.98224 0.92287 1.02808 1.21543 0.93370 1.01491 0.99121 1.21558 1.00775 0.95088 0.98280 1.21540 0.94295 0.96890 1.02692 1.21284 0.95550 0.99997 0.96313 1.22353 1.00398 0.98121 0.81613 1.22113 0.81829 0.96037 0.94036 1.23178 1.02313 0.96056 0.96088 1.21765 0.97556 0.88545 0.91647 1.44828 1.78832 1.02029 1.09117 1.18510 1.24998 1.05290 0.87961 0.92303 1.25740 0.99935 0.99472 0.96230 1.69939 1.39081 1.25849 1.24145 0.86001 0.82473 0.78777 0.75830 1.19251 1.20717 1.23493 1.21527 0.98022 0.91738 0.87901 1.87932 1.20063 1.77568 1.44337 0.88400 0.92117 0.91477 0.89955 0.88055 0.87638 0.91838 0.90834 0.91329 0.90729 0.90859 0.92048 0.91428 0.90899 0.92424 0.92326 0.89461 0.86334 0.88904 0.89492 0.93043 0.96442 0.92600 0.96257 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.57 71.98 0.69 -2.03 16 2 C 0.07 1.63 3.17 30.69 0.10 1.73 16 3 H 0.06 1.59 6.13 -2.38 -0.01 1.57 16 4 C 0.09 1.91 5.92 86.35 0.51 2.42 16 5 N -0.61 -14.15 2.91 -818.43 -2.38 -16.53 16 6 C 0.52 12.68 7.03 87.66 0.62 13.30 16 7 O -0.57 -17.35 15.45 -3.03 -0.05 -17.40 16 8 C -0.10 -1.97 1.69 -11.54 -0.02 -1.99 16 9 C -0.11 -1.83 4.86 30.59 0.15 -1.68 16 10 C -0.12 -1.64 5.92 30.60 0.18 -1.46 16 11 C -0.12 -1.55 5.92 30.59 0.18 -1.37 16 12 C -0.12 -1.64 5.92 30.58 0.18 -1.46 16 13 C -0.09 -1.71 4.51 30.58 0.14 -1.57 16 14 C 0.10 2.35 3.60 86.06 0.31 2.66 16 15 C 0.10 3.15 0.83 -10.21 -0.01 3.14 16 16 C -0.14 -4.10 5.91 31.80 0.19 -3.92 16 17 C 0.13 5.03 7.23 86.88 0.63 5.65 16 18 N -0.62 -29.40 3.05 -692.44 -2.11 -31.51 16 19 C -0.24 -13.58 10.50 84.03 0.88 -12.70 16 20 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 21 C -0.02 -1.00 5.42 84.86 0.46 -0.54 16 22 N -0.94 -58.45 13.97 21.65 0.30 -58.15 16 23 Si 0.94 47.50 24.77 68.60 1.70 49.20 16 24 H -0.27 -12.51 6.73 99.48 0.67 -11.84 16 25 H -0.28 -14.52 7.11 99.48 0.71 -13.81 16 26 H -0.31 -15.54 7.11 99.48 0.71 -14.84 16 27 C 0.13 5.44 5.23 86.48 0.45 5.89 16 28 O -0.38 -12.35 9.86 -148.97 -1.47 -13.82 16 29 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.10 2.27 7.06 -2.39 -0.02 2.25 16 34 H 0.11 1.85 7.20 -2.39 -0.02 1.83 16 35 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.07 1.20 5.75 -2.39 -0.01 1.18 16 37 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.06 1.20 8.04 -2.39 -0.02 1.18 16 45 H 0.09 1.99 8.05 -2.39 -0.02 1.97 16 46 H 0.12 2.43 5.01 -2.38 -0.01 2.42 16 47 H 0.09 2.44 7.86 -2.39 -0.02 2.42 16 48 H 0.09 2.33 5.98 -2.39 -0.01 2.32 16 49 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 50 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 51 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 52 H 0.02 0.91 3.49 -2.39 -0.01 0.90 16 53 H 0.06 2.38 7.79 -2.39 -0.02 2.36 16 Total: -1.00 -70.57 386.92 2.47 -68.09 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.84 Total: 14.04 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 5.64 Total: 6.08 kcal Atomic # 7 Polarization: -102.00 SS G_CDS: -4.19 Total: -106.19 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -1.52 Total: -31.22 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 1.70 Total: 49.20 kcal Total: -70.57 2.47 -68.09 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071131429.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.549 kcal (2) G-P(sol) polarization free energy of solvation -70.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds