Wall clock time and date at job start Tue Mar 31 2020 21:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.51633 * 2 1 4 4 C 1.53283 * 109.51200 * 239.89624 * 2 1 3 5 5 N 1.47160 * 108.57147 * 187.07196 * 4 2 1 6 6 C 1.34771 * 121.08472 * 231.26337 * 5 4 2 7 7 O 1.21288 * 120.00186 * 179.97438 * 6 5 4 8 8 C 1.50702 * 120.00117 * 359.97074 * 6 5 4 9 9 C 1.52995 * 109.47569 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47473 * 180.02562 * 9 8 6 11 11 C 1.53780 * 113.61375 * 272.49979 * 10 9 8 12 12 C 1.53780 * 87.08111 * 220.01746 * 11 10 9 13 13 C 1.53778 * 113.61650 * 175.00088 * 10 9 8 14 14 C 1.47338 * 117.83941 * 51.23534 * 5 4 2 15 15 C 1.52365 * 108.41267 * 310.82709 * 14 5 4 16 16 C 1.54357 * 110.42103 * 173.59988 * 15 14 5 17 17 C 1.54467 * 102.96294 * 152.15481 * 16 15 14 18 18 N 1.47087 * 107.29257 * 338.89887 * 17 16 15 19 19 C 1.36931 * 125.63639 * 178.84946 * 18 17 16 20 20 H 1.07999 * 120.00836 * 186.33582 * 19 18 17 21 21 C 1.38817 * 119.99862 * 6.34514 * 19 18 17 22 22 N 1.31625 * 119.99829 * 7.37839 * 21 19 18 23 23 Si 1.86795 * 120.00129 * 187.11038 * 21 19 18 24 24 H 1.48504 * 109.46958 * 265.28785 * 23 21 19 25 25 H 1.48489 * 109.47308 * 25.28591 * 23 21 19 26 26 H 1.48496 * 109.47352 * 145.29218 * 23 21 19 27 27 C 1.47572 * 108.73802 * 358.58570 * 18 17 16 28 28 O 1.41887 * 111.45538 * 50.05462 * 15 14 5 29 29 H 1.09000 * 109.47487 * 180.09967 * 1 2 3 30 30 H 1.09002 * 109.46784 * 300.09950 * 1 2 3 31 31 H 1.08995 * 109.47128 * 60.10187 * 1 2 3 32 32 H 1.09003 * 109.61713 * 67.35291 * 4 2 1 33 33 H 1.09002 * 109.77509 * 306.89183 * 4 2 1 34 34 H 1.09000 * 109.46998 * 300.00646 * 8 6 5 35 35 H 1.09006 * 109.46652 * 60.00460 * 8 6 5 36 36 H 1.09000 * 109.47120 * 300.00121 * 9 8 6 37 37 H 1.08997 * 109.47236 * 60.00088 * 9 8 6 38 38 H 1.08999 * 112.84908 * 43.80013 * 10 9 8 39 39 H 1.09002 * 113.61160 * 334.56576 * 11 10 9 40 40 H 1.08997 * 113.61427 * 105.46596 * 11 10 9 41 41 H 1.09007 * 113.61176 * 270.88335 * 12 11 10 42 42 H 1.08996 * 113.61967 * 139.97884 * 12 11 10 43 43 H 1.09008 * 113.61341 * 254.52830 * 13 10 9 44 44 H 1.08994 * 113.61553 * 25.34300 * 13 10 9 45 45 H 1.08996 * 109.68245 * 191.09449 * 14 5 4 46 46 H 1.09003 * 109.67283 * 70.55355 * 14 5 4 47 47 H 1.09000 * 110.72734 * 270.72738 * 16 15 14 48 48 H 1.09001 * 110.72930 * 33.84916 * 16 15 14 49 49 H 1.09002 * 110.00266 * 219.40622 * 17 16 15 50 50 H 1.08998 * 109.76069 * 98.25229 * 17 16 15 51 51 H 0.96994 * 119.99763 * 179.73061 * 22 21 19 52 52 H 1.08997 * 110.37722 * 142.40310 * 27 18 17 53 53 H 1.08998 * 110.38205 * 264.64975 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0420 -0.7247 -1.2499 5 7 3.5034 -0.8629 -1.1460 6 6 4.3124 -0.4742 -2.1513 7 8 5.5143 -0.5967 -2.0445 8 6 3.7236 0.1127 -3.4083 9 6 4.8494 0.4669 -4.3819 10 6 4.2517 1.0632 -5.6578 11 6 3.8725 0.0093 -6.7114 12 6 4.4209 0.9826 -7.7681 13 6 5.3076 1.5668 -6.6558 14 6 4.0535 -1.4396 0.0933 15 6 3.4217 -0.7222 1.2798 16 6 3.8435 -1.3957 2.6031 17 6 3.7715 -0.2356 3.6205 18 7 3.8528 1.0199 2.8586 19 6 3.8012 2.2806 3.3904 20 1 3.7666 3.1409 2.7384 21 6 3.7937 2.4531 4.7678 22 7 3.9820 1.4201 5.5614 23 14 3.5237 4.1525 5.4948 24 1 4.8376 4.7865 5.7724 25 1 2.7646 4.9885 4.5306 26 1 2.7546 4.0334 6.7595 27 6 4.0057 0.6965 1.4269 28 8 2.0081 -0.6777 1.1665 29 1 -0.3634 -1.0276 0.0018 30 1 -0.3633 0.5154 0.8891 31 1 -0.3633 0.5122 -0.8909 32 1 1.7916 -0.1441 -2.1379 33 1 1.5848 -1.7119 -1.3171 34 1 3.0582 -0.6155 -3.8722 35 1 3.1609 1.0127 -3.1601 36 1 5.5151 1.1949 -3.9182 37 1 5.4118 -0.4333 -4.6300 38 1 3.4609 1.7860 -5.4570 39 1 4.4447 -0.9149 -6.6302 40 1 2.7990 -0.1620 -6.7909 41 1 3.6755 1.6829 -8.1454 42 1 4.9834 0.4928 -8.5629 43 1 5.3928 2.6530 -6.6905 44 1 6.2727 1.0696 -6.5584 45 1 5.1345 -1.3014 0.1141 46 1 3.8180 -2.5028 0.1394 47 1 3.1474 -2.1907 2.8703 48 1 4.8601 -1.7825 2.5323 49 1 4.6058 -0.3000 4.3190 50 1 2.8271 -0.2793 4.1630 51 1 3.9806 1.5413 6.5238 52 1 3.4439 1.4032 0.8161 53 1 5.0587 0.7062 1.1458 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071154917.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:44 Heat of formation + Delta-G solvation = -56.930385 kcal Electronic energy + Delta-G solvation = -30846.985446 eV Core-core repulsion = 26912.010552 eV Total energy + Delta-G solvation = -3934.974894 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.83887 -40.29610 -39.46778 -37.92627 -35.78569 -34.91527 -33.73516 -32.90962 -31.12898 -30.03995 -28.05013 -27.49878 -26.80112 -26.37725 -25.16048 -23.18593 -22.82154 -21.99553 -20.89859 -20.29494 -19.87447 -18.99122 -18.18244 -17.93269 -17.03001 -16.89556 -16.72417 -16.36245 -15.99675 -15.72285 -15.56544 -15.40994 -15.10044 -14.87267 -14.51535 -14.07540 -13.96661 -13.86544 -13.60025 -13.57035 -13.26065 -13.11410 -13.03380 -12.96293 -12.85030 -12.82036 -12.68594 -12.23216 -12.20156 -12.11419 -12.06463 -11.99625 -11.88642 -11.68708 -11.53439 -11.38377 -11.09165 -10.95562 -10.91893 -10.74805 -10.66585 -9.52018 -8.93110 -7.87886 -5.26000 1.41714 1.44146 1.53485 1.59324 1.87164 2.45410 2.63129 3.28034 3.39941 3.52769 3.62528 3.69302 3.75179 3.80333 3.89482 3.94643 4.01336 4.03438 4.08743 4.21382 4.24956 4.33874 4.38743 4.44598 4.52791 4.59934 4.66589 4.67932 4.69744 4.74953 4.80824 4.86876 4.90740 4.93422 4.93898 4.95301 5.03515 5.05788 5.12178 5.13447 5.20943 5.28583 5.33487 5.36937 5.38103 5.48146 5.59125 5.70735 5.70922 6.15122 6.34556 6.38155 7.04791 7.12345 7.70872 8.36682 9.21174 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014289 B = 0.002811 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.090146 B = 9959.624701 C =10555.696947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.058 3.942 3 H 0.043 0.957 4 C 0.084 3.916 5 N -0.617 5.617 6 C 0.507 3.493 7 O -0.587 6.587 8 C -0.128 4.128 9 C -0.090 4.090 10 C -0.108 4.108 11 C -0.135 4.135 12 C -0.141 4.141 13 C -0.147 4.147 14 C 0.105 3.895 15 C 0.109 3.891 16 C -0.118 4.118 17 C 0.186 3.814 18 N -0.618 5.618 19 C -0.246 4.246 20 H 0.075 0.925 21 C -0.064 4.064 22 N -0.947 5.947 23 Si 0.980 3.020 24 H -0.285 1.285 25 H -0.269 1.269 26 H -0.290 1.290 27 C 0.122 3.878 28 O -0.368 6.368 29 H 0.076 0.924 30 H 0.045 0.955 31 H 0.105 0.895 32 H 0.129 0.871 33 H 0.099 0.901 34 H 0.124 0.876 35 H 0.111 0.889 36 H 0.046 0.954 37 H 0.056 0.944 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.082 0.918 46 H 0.095 0.905 47 H 0.093 0.907 48 H 0.091 0.909 49 H 0.026 0.974 50 H -0.002 1.002 51 H 0.248 0.752 52 H 0.036 0.964 53 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.257 -5.997 -25.771 27.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.000 4.000 3 H 0.061 0.939 4 C -0.038 4.038 5 N -0.349 5.349 6 C 0.298 3.702 7 O -0.467 6.467 8 C -0.167 4.167 9 C -0.128 4.128 10 C -0.126 4.126 11 C -0.172 4.172 12 C -0.178 4.178 13 C -0.184 4.184 14 C -0.018 4.018 15 C 0.068 3.932 16 C -0.156 4.156 17 C 0.061 3.939 18 N -0.344 5.344 19 C -0.375 4.375 20 H 0.092 0.908 21 C -0.257 4.257 22 N -0.596 5.596 23 Si 0.808 3.192 24 H -0.212 1.212 25 H -0.194 1.194 26 H -0.216 1.216 27 C -0.004 4.004 28 O -0.288 6.288 29 H 0.095 0.905 30 H 0.064 0.936 31 H 0.124 0.876 32 H 0.147 0.853 33 H 0.117 0.883 34 H 0.142 0.858 35 H 0.130 0.870 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.120 0.880 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.100 0.900 46 H 0.113 0.887 47 H 0.112 0.888 48 H 0.109 0.891 49 H 0.044 0.956 50 H 0.016 0.984 51 H 0.058 0.942 52 H 0.054 0.946 53 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -6.762 -6.045 -25.406 26.976 hybrid contribution 0.592 1.131 1.195 1.749 sum -6.170 -4.914 -24.211 25.463 Atomic orbital electron populations 1.21699 0.90100 1.03874 1.03395 1.22765 0.97100 0.95071 0.85037 0.93900 1.22707 0.78124 1.03411 0.99519 1.48374 1.08157 1.62323 1.16091 1.21586 0.86273 0.76690 0.85641 1.90681 1.16912 1.57107 1.81994 1.21758 1.00349 1.03359 0.91280 1.21270 0.96516 1.00452 0.94586 1.22590 0.98822 0.98753 0.92415 1.22983 1.01752 0.96984 0.95490 1.22817 0.99414 0.99097 0.96469 1.22985 0.97883 1.00758 0.96791 1.21901 0.99373 0.98001 0.82557 1.22025 0.81953 0.94246 0.95010 1.22707 1.02055 0.98084 0.92799 1.20938 0.97606 0.83421 0.91899 1.44718 1.85660 1.02331 1.01707 1.19357 1.43527 0.83885 0.90722 0.90756 1.25685 1.02246 1.01471 0.96315 1.70175 1.56498 1.30266 1.02640 0.85048 0.77576 0.78953 0.77663 1.21233 1.19353 1.21604 1.22011 0.96405 0.95770 0.86221 1.87816 1.19298 1.76984 1.44673 0.90501 0.93558 0.87612 0.85309 0.88268 0.85767 0.87041 0.93527 0.92494 0.87956 0.90577 0.90208 0.89373 0.91460 0.91544 0.90977 0.89965 0.88724 0.88835 0.89077 0.95607 0.98358 0.94226 0.94553 0.97233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 9.57 71.98 0.69 -1.85 16 2 C 0.06 1.49 3.20 30.69 0.10 1.59 16 3 H 0.04 1.31 6.25 -2.39 -0.01 1.29 16 4 C 0.08 1.51 5.81 86.35 0.50 2.01 16 5 N -0.62 -15.54 2.95 -818.65 -2.42 -17.96 16 6 C 0.51 13.36 7.71 87.66 0.68 14.03 16 7 O -0.59 -20.93 15.47 -3.06 -0.05 -20.98 16 8 C -0.13 -2.06 4.06 29.85 0.12 -1.94 16 9 C -0.09 -1.64 4.34 30.59 0.13 -1.51 16 10 C -0.11 -1.39 3.65 -10.27 -0.04 -1.43 16 11 C -0.13 -1.45 7.63 31.12 0.24 -1.22 16 12 C -0.14 -1.52 8.08 31.12 0.25 -1.27 16 13 C -0.15 -2.01 7.64 31.12 0.24 -1.77 16 14 C 0.11 3.17 5.30 86.01 0.46 3.63 16 15 C 0.11 3.98 0.84 -10.16 -0.01 3.97 16 16 C -0.12 -4.57 6.12 31.55 0.19 -4.38 16 17 C 0.19 9.76 5.44 86.77 0.47 10.24 16 18 N -0.62 -34.07 3.40 -692.73 -2.36 -36.42 16 19 C -0.25 -14.61 10.26 84.04 0.86 -13.74 16 20 H 0.07 4.27 7.84 -2.91 -0.02 4.25 16 21 C -0.06 -3.79 5.45 84.86 0.46 -3.33 16 22 N -0.95 -58.98 10.47 21.65 0.23 -58.76 16 23 Si 0.98 47.32 29.56 68.60 2.03 49.34 16 24 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 25 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 26 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 27 C 0.12 5.51 6.18 86.55 0.53 6.04 16 28 O -0.37 -12.86 9.92 -148.95 -1.48 -14.34 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.13 1.33 6.05 -2.39 -0.01 1.31 16 33 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.12 1.23 8.01 -2.39 -0.02 1.21 16 35 H 0.11 1.42 7.67 -2.38 -0.02 1.40 16 36 H 0.05 1.07 8.10 -2.39 -0.02 1.06 16 37 H 0.06 1.18 7.80 -2.39 -0.02 1.16 16 38 H 0.10 1.10 8.13 -2.39 -0.02 1.08 16 39 H 0.08 0.91 7.90 -2.39 -0.02 0.89 16 40 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 42 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 43 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 44 H 0.07 1.11 8.10 -2.39 -0.02 1.09 16 45 H 0.08 2.82 6.86 -2.39 -0.02 2.80 16 46 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 47 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 48 H 0.09 3.19 7.99 -2.39 -0.02 3.18 16 49 H 0.03 1.51 6.99 -2.39 -0.02 1.49 16 50 H 0.00 -0.11 7.92 -2.39 -0.02 -0.13 16 51 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 52 H 0.04 1.64 6.09 -2.39 -0.01 1.62 16 53 H 0.01 0.48 7.82 -2.39 -0.02 0.46 16 Total: -1.00 -78.47 403.64 2.70 -75.77 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.87 Total: 14.28 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 5.88 Total: 9.07 kcal Atomic # 7 Polarization: -108.59 SS G_CDS: -4.55 Total: -113.14 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -1.53 Total: -35.32 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.34 kcal Total: -78.47 2.70 -75.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071154917.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.837 kcal (2) G-P(sol) polarization free energy of solvation -78.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds