Wall clock time and date at job start Tue Mar 31 2020 21:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.50889 * 2 1 4 4 C 1.53272 * 109.51064 * 239.89858 * 2 1 3 5 5 N 1.47168 * 108.54933 * 187.18249 * 4 2 1 6 6 C 1.34778 * 121.06439 * 231.10315 * 5 4 2 7 7 O 1.21277 * 120.00268 * 180.02562 * 6 5 4 8 8 C 1.50701 * 119.99917 * 0.02650 * 6 5 4 9 9 C 1.53783 * 113.61142 * 277.49409 * 8 6 5 10 10 C 1.53783 * 87.08208 * 220.02320 * 9 8 6 11 11 C 1.53003 * 113.60780 * 270.88372 * 10 9 8 12 12 C 1.52998 * 113.69143 * 139.99511 * 10 9 8 13 13 C 1.53781 * 87.08167 * 25.43153 * 10 9 8 14 14 C 1.47302 * 117.87106 * 51.12419 * 5 4 2 15 15 C 1.52518 * 108.39584 * 310.60914 * 14 5 4 16 16 C 1.54523 * 110.04692 * 287.91955 * 15 14 5 17 17 C 1.55269 * 101.41877 * 206.72546 * 16 15 14 18 18 N 1.47482 * 104.77791 * 36.69922 * 17 16 15 19 19 C 1.36931 * 125.66184 * 155.88053 * 18 17 16 20 20 H 1.08002 * 120.00098 * 179.69880 * 19 18 17 21 21 C 1.38812 * 120.00429 * 359.69765 * 19 18 17 22 22 N 1.31624 * 119.99535 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00187 * 180.27849 * 21 19 18 24 24 H 1.48497 * 109.47173 * 179.72427 * 23 21 19 25 25 H 1.48506 * 109.46866 * 299.71963 * 23 21 19 26 26 H 1.48501 * 109.47438 * 59.72083 * 23 21 19 27 27 C 1.47188 * 108.67032 * 335.62136 * 18 17 16 28 28 O 1.42065 * 111.11964 * 50.43085 * 15 14 5 29 29 H 1.08992 * 109.47398 * 180.10584 * 1 2 3 30 30 H 1.09006 * 109.46861 * 300.10674 * 1 2 3 31 31 H 1.08996 * 109.46976 * 60.10159 * 1 2 3 32 32 H 1.08998 * 109.62580 * 67.45960 * 4 2 1 33 33 H 1.09003 * 109.77543 * 306.98680 * 4 2 1 34 34 H 1.08989 * 112.85305 * 48.79820 * 8 6 5 35 35 H 1.09002 * 113.61168 * 334.56554 * 9 8 6 36 36 H 1.08992 * 113.61704 * 105.47047 * 9 8 6 37 37 H 1.09004 * 109.46549 * 157.49698 * 11 10 9 38 38 H 1.09001 * 109.47189 * 277.49425 * 11 10 9 39 39 H 1.08998 * 109.47222 * 37.50132 * 11 10 9 40 40 H 1.09000 * 109.47029 * 322.45844 * 12 10 9 41 41 H 1.08990 * 109.47411 * 82.46172 * 12 10 9 42 42 H 1.09007 * 109.46547 * 202.46503 * 12 10 9 43 43 H 1.09000 * 113.61300 * 220.02225 * 13 10 9 44 44 H 1.08996 * 113.61359 * 89.11722 * 13 10 9 45 45 H 1.09002 * 109.68113 * 190.88023 * 14 5 4 46 46 H 1.09006 * 109.68038 * 70.33072 * 14 5 4 47 47 H 1.09001 * 111.00890 * 324.97537 * 16 15 14 48 48 H 1.08998 * 111.01150 * 88.81304 * 16 15 14 49 49 H 1.09005 * 110.50194 * 277.83739 * 17 16 15 50 50 H 1.09000 * 110.32480 * 155.47609 * 17 16 15 51 51 H 0.97005 * 119.99717 * 180.02562 * 22 21 19 52 52 H 1.09006 * 109.90504 * 121.13754 * 27 18 17 53 53 H 1.09006 * 109.90324 * 242.20668 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0419 -0.7246 -1.2499 5 7 3.5031 -0.8649 -1.1442 6 6 4.3133 -0.4795 -2.1499 7 8 5.5149 -0.6044 -2.0425 8 6 3.7262 0.1067 -3.4080 9 6 3.2343 -0.9516 -4.4094 10 6 3.8161 -0.0591 -5.5183 11 6 2.8273 0.9804 -6.0501 12 6 4.5140 -0.8403 -6.6334 13 6 4.7813 0.4952 -4.4572 14 6 4.0517 -1.4406 0.0957 15 6 3.4234 -0.7163 1.2818 16 6 3.9929 0.7160 1.3900 17 6 3.8283 0.9986 2.9078 18 7 4.1107 -0.2920 3.5635 19 6 4.5412 -0.4549 4.8531 20 1 4.7157 -1.4468 5.2429 21 6 4.7532 0.6549 5.6596 22 7 4.5410 1.8639 5.1843 23 14 5.3479 0.4330 7.4164 24 1 5.5014 1.7630 8.0587 25 1 4.3579 -0.3722 8.1760 26 1 6.6568 -0.2683 7.4111 27 6 3.8471 -1.3759 2.6033 28 8 2.0079 -0.6773 1.1664 29 1 -0.3634 -1.0276 0.0019 30 1 -0.3633 0.5155 0.8891 31 1 -0.3633 0.5122 -0.8909 32 1 1.7933 -0.1432 -2.1377 33 1 1.5834 -1.7111 -1.3180 34 1 2.9983 0.8930 -3.2089 35 1 3.7395 -1.9126 -4.3124 36 1 2.1490 -1.0449 -4.4482 37 1 3.3765 1.8032 -6.5080 38 1 2.1789 0.5178 -6.7942 39 1 2.2224 1.3609 -5.2271 40 1 5.0472 -1.6884 -6.2040 41 1 3.7709 -1.2006 -7.3446 42 1 5.2213 -0.1881 -7.1460 43 1 4.9449 1.5701 -4.5347 44 1 5.7094 -0.0702 -4.3733 45 1 5.1333 -1.3072 0.1152 46 1 3.8113 -2.5027 0.1451 47 1 5.0419 0.7428 1.0950 48 1 3.4044 1.4164 0.7973 49 1 2.8105 1.3210 3.1279 50 1 4.5444 1.7535 3.2323 51 1 4.6895 2.6394 5.7477 52 1 4.7516 -1.9649 2.4510 53 1 3.0465 -2.0151 2.9758 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071167148.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:21 Heat of formation + Delta-G solvation = -48.988150 kcal Electronic energy + Delta-G solvation = -31338.334536 eV Core-core repulsion = 27403.704044 eV Total energy + Delta-G solvation = -3934.630493 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.10777 -40.92790 -39.07401 -37.96895 -35.82846 -34.80702 -32.96948 -31.97462 -31.04083 -30.03001 -28.22473 -27.80071 -27.27583 -26.66910 -25.92640 -23.98495 -23.23099 -21.98813 -20.80366 -19.96634 -19.19023 -19.02268 -18.36375 -17.93653 -17.10695 -16.89109 -16.52530 -16.06008 -15.88448 -15.59134 -15.56468 -15.04577 -14.97184 -14.78150 -14.36827 -14.16064 -13.97561 -13.83892 -13.72000 -13.60827 -13.58315 -13.11486 -13.01736 -12.93228 -12.80425 -12.73832 -12.68610 -12.41430 -12.28564 -12.24680 -12.06566 -12.04677 -11.89896 -11.74168 -11.59627 -11.47008 -11.22598 -11.00523 -10.93403 -10.77244 -10.61150 -9.54844 -8.95363 -7.80031 -5.25791 1.44789 1.49223 1.53645 1.55450 1.83471 2.44994 2.60726 3.29506 3.37568 3.44315 3.51792 3.57232 3.63064 3.72583 3.78171 3.85331 3.93672 3.97418 4.10696 4.19744 4.33167 4.37099 4.47284 4.48022 4.52155 4.59535 4.70165 4.71899 4.73766 4.76457 4.78755 4.85315 4.88407 4.91429 4.93069 4.97271 5.04347 5.07854 5.11198 5.20732 5.23333 5.25049 5.31463 5.35756 5.41542 5.48804 5.52331 5.63607 5.71311 6.23654 6.31994 6.34953 7.05693 7.09955 7.71806 8.36798 9.22199 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021131 B = 0.002798 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.759562 B =10003.764650 C =10541.316850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.056 3.944 3 H 0.055 0.945 4 C 0.085 3.915 5 N -0.610 5.610 6 C 0.519 3.481 7 O -0.586 6.586 8 C -0.133 4.133 9 C -0.105 4.105 10 C -0.079 4.079 11 C -0.127 4.127 12 C -0.136 4.136 13 C -0.118 4.118 14 C 0.106 3.894 15 C 0.114 3.886 16 C -0.147 4.147 17 C 0.168 3.832 18 N -0.623 5.623 19 C -0.242 4.242 20 H 0.084 0.916 21 C -0.069 4.069 22 N -0.951 5.951 23 Si 0.986 3.014 24 H -0.292 1.292 25 H -0.276 1.276 26 H -0.276 1.276 27 C 0.147 3.853 28 O -0.374 6.374 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.108 0.892 32 H 0.128 0.872 33 H 0.094 0.906 34 H 0.136 0.864 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.045 0.955 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.057 0.943 48 H 0.077 0.923 49 H -0.015 1.015 50 H 0.072 0.928 51 H 0.248 0.752 52 H 0.047 0.953 53 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.602 -3.980 -26.073 28.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.001 4.001 3 H 0.073 0.927 4 C -0.037 4.037 5 N -0.342 5.342 6 C 0.310 3.690 7 O -0.466 6.466 8 C -0.153 4.153 9 C -0.142 4.142 10 C -0.079 4.079 11 C -0.184 4.184 12 C -0.193 4.193 13 C -0.156 4.156 14 C -0.017 4.017 15 C 0.073 3.927 16 C -0.186 4.186 17 C 0.043 3.957 18 N -0.350 5.350 19 C -0.370 4.370 20 H 0.102 0.898 21 C -0.261 4.261 22 N -0.601 5.601 23 Si 0.813 3.187 24 H -0.218 1.218 25 H -0.202 1.202 26 H -0.201 1.201 27 C 0.021 3.979 28 O -0.294 6.294 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.126 0.874 32 H 0.146 0.854 33 H 0.112 0.888 34 H 0.154 0.846 35 H 0.090 0.910 36 H 0.121 0.879 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.098 0.902 46 H 0.104 0.896 47 H 0.076 0.924 48 H 0.096 0.904 49 H 0.003 0.997 50 H 0.089 0.911 51 H 0.057 0.943 52 H 0.065 0.935 53 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.041 -4.027 -25.718 27.557 hybrid contribution 0.863 0.246 1.542 1.785 sum -8.178 -3.781 -24.175 25.800 Atomic orbital electron populations 1.21726 0.89954 1.03837 1.03705 1.22842 0.97167 0.95423 0.84704 0.92721 1.22703 0.78072 1.03292 0.99659 1.48291 1.08164 1.62173 1.15569 1.21304 0.86063 0.76642 0.84997 1.90669 1.16982 1.57256 1.81695 1.22864 1.01267 1.01414 0.89799 1.23010 1.02500 0.95950 0.92760 1.21767 0.96060 0.96462 0.93649 1.21627 0.97893 0.97385 1.01529 1.21723 1.00411 0.99322 0.97857 1.22992 0.96898 1.01557 0.94107 1.21866 0.99255 0.97718 0.82909 1.21892 0.81776 0.94875 0.94122 1.23305 1.00020 0.97104 0.98160 1.21630 0.96933 0.89330 0.87813 1.44794 1.78180 1.02005 1.10000 1.19456 1.36687 0.93521 0.87352 0.89804 1.25710 1.02505 0.94958 1.02932 1.70059 1.56179 0.97580 1.36246 0.85041 0.78376 0.76384 0.78850 1.21842 1.20245 1.20140 1.21219 0.97584 0.91249 0.87798 1.87880 1.19362 1.77349 1.44772 0.90926 0.93042 0.87371 0.85403 0.88763 0.84618 0.90967 0.87898 0.92160 0.91025 0.91470 0.93560 0.91173 0.92399 0.90738 0.91301 0.90183 0.89618 0.92441 0.90441 0.99657 0.91053 0.94272 0.93530 0.94814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 9.57 71.98 0.69 -1.63 16 2 C 0.06 1.34 3.17 30.69 0.10 1.44 16 3 H 0.05 1.43 6.14 -2.39 -0.01 1.41 16 4 C 0.08 1.51 5.82 86.34 0.50 2.01 16 5 N -0.61 -15.64 2.91 -818.45 -2.38 -18.02 16 6 C 0.52 14.01 7.24 87.66 0.63 14.65 16 7 O -0.59 -21.41 15.39 -3.02 -0.05 -21.46 16 8 C -0.13 -2.27 2.42 -11.01 -0.03 -2.30 16 9 C -0.10 -1.31 6.69 31.12 0.21 -1.11 16 10 C -0.08 -0.96 1.39 -51.65 -0.07 -1.03 16 11 C -0.13 -1.04 9.07 71.98 0.65 -0.38 16 12 C -0.14 -1.61 9.19 71.98 0.66 -0.95 16 13 C -0.12 -2.13 6.56 31.12 0.20 -1.93 16 14 C 0.11 3.38 5.17 86.07 0.44 3.83 16 15 C 0.11 4.27 0.83 -10.22 -0.01 4.26 16 16 C -0.15 -6.17 5.92 31.89 0.19 -5.99 16 17 C 0.17 8.97 5.91 86.97 0.51 9.48 16 18 N -0.62 -34.30 3.40 -691.99 -2.35 -36.65 16 19 C -0.24 -14.16 10.28 84.03 0.86 -13.29 16 20 H 0.08 4.66 7.83 -2.91 -0.02 4.63 16 21 C -0.07 -4.05 5.49 84.86 0.47 -3.58 16 22 N -0.95 -58.86 10.09 21.65 0.22 -58.64 16 23 Si 0.99 47.06 29.55 68.60 2.03 49.08 16 24 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 25 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 26 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 27 C 0.15 6.56 6.61 86.47 0.57 7.13 16 28 O -0.37 -12.93 9.87 -148.97 -1.47 -14.40 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.13 1.32 5.83 -2.39 -0.01 1.31 16 33 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.14 1.67 6.70 -2.39 -0.02 1.65 16 35 H 0.07 1.14 7.92 -2.39 -0.02 1.12 16 36 H 0.10 0.76 8.10 -2.39 -0.02 0.74 16 37 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.07 0.45 7.34 -2.39 -0.02 0.43 16 40 H 0.05 0.65 7.95 -2.39 -0.02 0.63 16 41 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 43 H 0.07 1.27 8.10 -2.39 -0.02 1.25 16 44 H 0.07 1.63 7.39 -2.39 -0.02 1.62 16 45 H 0.08 2.93 6.89 -2.39 -0.02 2.91 16 46 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 47 H 0.06 2.52 7.86 -2.39 -0.02 2.50 16 48 H 0.08 2.93 5.98 -2.39 -0.01 2.91 16 49 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 50 H 0.07 4.31 5.86 -2.39 -0.01 4.29 16 51 H 0.25 14.83 8.31 -92.70 -0.77 14.06 16 52 H 0.05 1.99 7.79 -2.38 -0.02 1.97 16 53 H 0.03 1.52 8.07 -2.38 -0.02 1.50 16 Total: -1.00 -76.76 399.33 3.46 -73.31 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.88 Total: 16.18 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 6.59 Total: 10.61 kcal Atomic # 7 Polarization: -108.80 SS G_CDS: -4.52 Total: -113.32 kcal Atomic # 8 Polarization: -34.34 SS G_CDS: -1.52 Total: -35.86 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.08 kcal Total: -76.76 3.46 -73.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071167148.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.318 kcal (2) G-P(sol) polarization free energy of solvation -76.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds