Wall clock time and date at job start Tue Mar 31 2020 21:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.50915 * 2 1 4 4 C 1.53274 * 109.51403 * 120.10148 * 2 1 3 5 5 N 1.47170 * 108.57058 * 172.91277 * 4 2 1 6 6 C 1.34769 * 121.07870 * 128.75748 * 5 4 2 7 7 O 1.21281 * 120.00179 * 179.97438 * 6 5 4 8 8 C 1.50706 * 119.99883 * 0.02562 * 6 5 4 9 9 C 1.53779 * 113.61311 * 279.12869 * 8 6 5 10 10 C 1.53952 * 87.02216 * 220.05043 * 9 8 6 11 11 C 1.52993 * 113.53793 * 270.81079 * 10 9 8 12 12 C 1.53004 * 113.74176 * 139.94544 * 10 9 8 13 13 C 1.53786 * 87.11054 * 25.36621 * 10 9 8 14 14 C 1.47333 * 117.84477 * 308.78264 * 5 4 2 15 15 C 1.52368 * 108.40708 * 49.17904 * 14 5 4 16 16 C 1.54348 * 110.42260 * 186.36863 * 15 14 5 17 17 C 1.54456 * 102.87378 * 207.61878 * 16 15 14 18 18 N 1.47086 * 107.29741 * 21.48642 * 17 16 15 19 19 C 1.36938 * 125.62913 * 181.02481 * 18 17 16 20 20 H 1.07997 * 119.99799 * 179.97438 * 19 18 17 21 21 C 1.38806 * 120.00356 * 359.97438 * 19 18 17 22 22 N 1.31620 * 120.00037 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00335 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46900 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47253 * 120.00097 * 23 21 19 26 26 H 1.48503 * 109.46866 * 240.00143 * 23 21 19 27 27 C 1.47566 * 108.73667 * 1.00579 * 18 17 16 28 28 O 1.41886 * 111.44615 * 309.92202 * 15 14 5 29 29 H 1.09002 * 109.47153 * 299.89889 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.90079 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.90061 * 1 2 3 32 32 H 1.09004 * 109.61988 * 292.63582 * 4 2 1 33 33 H 1.08997 * 109.62015 * 53.00042 * 4 2 1 34 34 H 1.08996 * 112.85162 * 50.32906 * 8 6 5 35 35 H 1.09008 * 113.61719 * 334.57442 * 9 8 6 36 36 H 1.09002 * 113.61435 * 105.46850 * 9 8 6 37 37 H 1.09000 * 109.47359 * 157.49345 * 11 10 9 38 38 H 1.08997 * 109.47649 * 277.49633 * 11 10 9 39 39 H 1.09006 * 109.47345 * 37.49646 * 11 10 9 40 40 H 1.09004 * 109.47249 * 322.40469 * 12 10 9 41 41 H 1.09002 * 109.46802 * 82.40195 * 12 10 9 42 42 H 1.09003 * 109.46882 * 202.40335 * 12 10 9 43 43 H 1.08996 * 113.60904 * 220.09086 * 13 10 9 44 44 H 1.08997 * 113.68594 * 89.19722 * 13 10 9 45 45 H 1.08995 * 109.67763 * 168.91295 * 14 5 4 46 46 H 1.09001 * 109.67434 * 289.45270 * 14 5 4 47 47 H 1.08996 * 110.73666 * 325.96734 * 16 15 14 48 48 H 1.08999 * 110.72943 * 89.27508 * 16 15 14 49 49 H 1.09003 * 109.88301 * 262.05909 * 17 16 15 50 50 H 1.09003 * 109.88287 * 140.91277 * 17 16 15 51 51 H 0.96999 * 120.00515 * 179.97438 * 22 21 19 52 52 H 1.09004 * 110.37658 * 217.84457 * 27 18 17 53 53 H 1.09002 * 110.37935 * 95.50233 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0420 -0.7246 1.2499 5 7 3.5034 -0.8631 1.1457 6 6 4.3125 -0.4747 2.1511 7 8 5.5143 -0.5983 2.0446 8 6 3.7238 0.1120 3.4082 9 6 3.3582 1.6003 3.2808 10 6 3.9043 1.7741 4.7097 11 6 2.8507 1.5551 5.7972 12 6 4.7065 3.0614 4.9103 13 6 4.7795 0.5382 4.4420 14 6 4.0534 -1.4396 -0.0936 15 6 3.4216 -0.7218 -1.2799 16 6 3.8437 -1.3944 -2.6035 17 6 3.7653 -0.2337 -3.6196 18 7 3.8527 1.0213 -2.8575 19 6 3.8005 2.2824 -3.3888 20 1 3.8734 3.1442 -2.7420 21 6 3.6540 2.4530 -4.7585 22 7 3.5656 1.4028 -5.5468 23 14 3.5821 4.1733 -5.4830 24 1 3.7020 5.1748 -4.3932 25 1 4.6987 4.3521 -6.4454 26 1 2.2876 4.3605 -6.1864 27 6 4.0054 0.6970 -1.4261 28 8 2.0080 -0.6775 -1.1666 29 1 -0.3633 0.5123 0.8909 30 1 -0.3633 -1.0277 -0.0018 31 1 -0.3634 0.5154 -0.8891 32 1 1.7918 -0.1439 2.1378 33 1 1.5818 -1.7105 1.3156 34 1 2.9247 -0.4996 3.8269 35 1 3.9382 2.1292 2.5244 36 1 2.2866 1.7810 3.1969 37 1 3.3440 1.2967 6.7343 38 1 2.2716 2.4687 5.9314 39 1 2.1858 0.7437 5.5009 40 1 5.2940 3.2666 4.0154 41 1 4.0230 3.8904 5.0942 42 1 5.3738 2.9443 5.7642 43 1 4.8536 -0.1371 5.2943 44 1 5.7491 0.7749 4.0039 45 1 5.1344 -1.3017 -0.1144 46 1 3.8175 -2.5028 -0.1400 47 1 4.8614 -1.7782 -2.5339 48 1 3.1478 -2.1894 -2.8713 49 1 2.8183 -0.2754 -4.1577 50 1 4.5962 -0.2994 -4.3221 51 1 3.4628 1.5219 -6.5039 52 1 3.4436 1.4035 -0.8149 53 1 5.0586 0.7049 -1.1453 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071167149.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:25 Heat of formation + Delta-G solvation = -51.657832 kcal Electronic energy + Delta-G solvation = -31804.280184 eV Core-core repulsion = 27869.533925 eV Total energy + Delta-G solvation = -3934.746259 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.09978 -40.89747 -39.07924 -37.93296 -35.79973 -34.87813 -32.98575 -31.98146 -31.10067 -29.89047 -28.23848 -27.83508 -27.25838 -26.71823 -25.98152 -23.99979 -23.17634 -21.99172 -20.86542 -19.90203 -19.17769 -18.99630 -18.34523 -17.94044 -17.09469 -16.82264 -16.59069 -16.12967 -15.76498 -15.64861 -15.46242 -15.17905 -15.10828 -14.89569 -14.31226 -14.03825 -13.92337 -13.90693 -13.72184 -13.59005 -13.55419 -13.13136 -13.04091 -12.96209 -12.83915 -12.71141 -12.67381 -12.44382 -12.24238 -12.08013 -12.05797 -12.01480 -12.00174 -11.75201 -11.73532 -11.50419 -11.25724 -11.02583 -10.92050 -10.73959 -10.61212 -9.53459 -8.94305 -7.88703 -5.24844 1.41573 1.43438 1.53469 1.53941 1.84664 2.44957 2.62336 3.28868 3.37478 3.43187 3.50401 3.59526 3.63565 3.72179 3.74009 3.87614 3.92111 4.06164 4.09470 4.19519 4.34331 4.37268 4.45201 4.50958 4.53778 4.60590 4.65209 4.67542 4.69813 4.76832 4.78437 4.83990 4.88459 4.90182 4.93189 4.95834 5.02204 5.06559 5.11031 5.18416 5.23033 5.23539 5.31440 5.36220 5.36820 5.45664 5.60188 5.63576 5.71711 6.14121 6.32867 6.37323 7.05520 7.09753 7.70881 8.36267 9.21884 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012693 B = 0.003593 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.365313 B = 7790.597161 C = 8534.294280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.061 3.939 3 H 0.042 0.958 4 C 0.086 3.914 5 N -0.613 5.613 6 C 0.519 3.481 7 O -0.585 6.585 8 C -0.128 4.128 9 C -0.117 4.117 10 C -0.078 4.078 11 C -0.125 4.125 12 C -0.138 4.138 13 C -0.112 4.112 14 C 0.104 3.896 15 C 0.109 3.891 16 C -0.119 4.119 17 C 0.192 3.808 18 N -0.620 5.620 19 C -0.246 4.246 20 H 0.075 0.925 21 C -0.062 4.062 22 N -0.948 5.948 23 Si 0.980 3.020 24 H -0.268 1.268 25 H -0.290 1.290 26 H -0.288 1.288 27 C 0.123 3.877 28 O -0.369 6.369 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.124 0.876 33 H 0.099 0.901 34 H 0.146 0.854 35 H 0.057 0.943 36 H 0.098 0.902 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.038 0.962 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.085 0.915 44 H 0.064 0.936 45 H 0.082 0.918 46 H 0.096 0.904 47 H 0.091 0.909 48 H 0.093 0.907 49 H 0.013 0.987 50 H 0.009 0.991 51 H 0.248 0.752 52 H 0.035 0.965 53 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.953 -4.850 24.552 25.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.003 3.997 3 H 0.060 0.940 4 C -0.036 4.036 5 N -0.345 5.345 6 C 0.309 3.691 7 O -0.465 6.465 8 C -0.149 4.149 9 C -0.155 4.155 10 C -0.078 4.078 11 C -0.182 4.182 12 C -0.196 4.196 13 C -0.150 4.150 14 C -0.019 4.019 15 C 0.067 3.933 16 C -0.158 4.158 17 C 0.067 3.933 18 N -0.346 5.346 19 C -0.375 4.375 20 H 0.093 0.907 21 C -0.255 4.255 22 N -0.596 5.596 23 Si 0.808 3.192 24 H -0.192 1.192 25 H -0.216 1.216 26 H -0.214 1.214 27 C -0.002 4.002 28 O -0.288 6.288 29 H 0.124 0.876 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.142 0.858 33 H 0.117 0.883 34 H 0.164 0.836 35 H 0.076 0.924 36 H 0.117 0.883 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.057 0.943 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.083 0.917 45 H 0.101 0.899 46 H 0.114 0.886 47 H 0.110 0.890 48 H 0.111 0.889 49 H 0.031 0.969 50 H 0.028 0.972 51 H 0.057 0.943 52 H 0.053 0.947 53 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -6.466 -4.893 24.183 25.506 hybrid contribution 0.684 1.101 -1.317 1.848 sum -5.782 -3.792 22.866 23.888 Atomic orbital electron populations 1.21705 0.90108 1.03902 1.03395 1.22728 0.97073 0.94991 0.84925 0.94009 1.22674 0.78224 1.03278 0.99458 1.48327 1.08087 1.62027 1.16039 1.21297 0.86142 0.76252 0.85383 1.90660 1.16854 1.56988 1.81991 1.22858 1.01650 0.97961 0.92385 1.23083 1.02602 0.92388 0.97384 1.21804 0.96467 0.94759 0.94793 1.21613 0.97100 1.02704 0.96778 1.21743 0.99840 0.96679 1.01305 1.22942 0.96823 0.97637 0.97609 1.21931 0.99388 0.98068 0.82529 1.22036 0.81937 0.94297 0.94993 1.22730 1.02021 0.98198 0.92823 1.20877 0.97732 0.83245 0.91454 1.44718 1.85823 1.02376 1.01654 1.19403 1.43018 0.83726 0.91372 0.90741 1.25649 1.02176 1.01387 0.96290 1.70192 1.57237 1.28984 1.03215 0.84999 0.76991 0.79116 0.78143 1.19240 1.21640 1.21435 1.21989 0.96371 0.95718 0.86156 1.87819 1.19361 1.76983 1.44630 0.87603 0.90453 0.93555 0.85781 0.88269 0.83623 0.92411 0.88339 0.91574 0.91484 0.91058 0.94293 0.91501 0.91794 0.89641 0.91699 0.89929 0.88623 0.89033 0.88855 0.96861 0.97250 0.94251 0.94715 0.97167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.57 71.98 0.69 -1.97 16 2 C 0.06 1.61 3.19 30.69 0.10 1.71 16 3 H 0.04 1.32 6.25 -2.38 -0.01 1.31 16 4 C 0.09 1.64 5.78 86.34 0.50 2.14 16 5 N -0.61 -16.04 2.95 -818.66 -2.42 -18.46 16 6 C 0.52 14.32 7.24 87.66 0.63 14.95 16 7 O -0.58 -21.41 15.40 -3.03 -0.05 -21.46 16 8 C -0.13 -2.30 2.38 -11.01 -0.03 -2.33 16 9 C -0.12 -2.02 6.26 31.18 0.20 -1.82 16 10 C -0.08 -1.14 1.39 -51.60 -0.07 -1.21 16 11 C -0.12 -1.13 9.07 71.98 0.65 -0.48 16 12 C -0.14 -2.17 9.20 71.98 0.66 -1.51 16 13 C -0.11 -2.08 6.55 31.12 0.20 -1.88 16 14 C 0.10 3.20 5.30 86.01 0.46 3.65 16 15 C 0.11 4.02 0.83 -10.17 -0.01 4.01 16 16 C -0.12 -4.65 6.12 31.55 0.19 -4.46 16 17 C 0.19 10.09 5.38 86.76 0.47 10.56 16 18 N -0.62 -34.25 3.40 -692.77 -2.36 -36.61 16 19 C -0.25 -14.66 10.28 84.03 0.86 -13.80 16 20 H 0.07 4.30 7.83 -2.91 -0.02 4.28 16 21 C -0.06 -3.66 5.49 84.86 0.47 -3.20 16 22 N -0.95 -58.93 10.31 21.65 0.22 -58.71 16 23 Si 0.98 47.37 29.55 68.60 2.03 49.40 16 24 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 25 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 26 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 27 C 0.12 5.63 6.18 86.55 0.53 6.16 16 28 O -0.37 -13.18 9.92 -148.95 -1.48 -14.66 16 29 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.12 1.53 5.45 -2.39 -0.01 1.52 16 33 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.15 1.61 7.15 -2.39 -0.02 1.60 16 35 H 0.06 1.37 7.93 -2.38 -0.02 1.35 16 36 H 0.10 1.24 7.81 -2.39 -0.02 1.22 16 37 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.07 0.48 7.34 -2.38 -0.02 0.46 16 40 H 0.04 0.75 7.96 -2.39 -0.02 0.73 16 41 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.08 1.31 8.10 -2.39 -0.02 1.29 16 44 H 0.06 1.62 7.41 -2.39 -0.02 1.61 16 45 H 0.08 2.86 6.86 -2.39 -0.02 2.85 16 46 H 0.10 2.49 8.14 -2.39 -0.02 2.48 16 47 H 0.09 3.21 8.00 -2.39 -0.02 3.19 16 48 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 49 H 0.01 0.78 7.38 -2.39 -0.02 0.76 16 50 H 0.01 0.54 7.50 -2.39 -0.02 0.52 16 51 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 52 H 0.03 1.59 6.09 -2.38 -0.01 1.57 16 53 H 0.01 0.51 7.82 -2.39 -0.02 0.49 16 Total: -1.00 -78.40 399.66 3.33 -75.07 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.87 Total: 14.90 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 6.51 Total: 10.53 kcal Atomic # 7 Polarization: -109.22 SS G_CDS: -4.55 Total: -113.77 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -1.52 Total: -36.11 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -78.40 3.33 -75.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071167149.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.408 kcal (2) G-P(sol) polarization free energy of solvation -78.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds