Wall clock time and date at job start Tue Mar 31 2020 21:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.51738 * 2 1 4 4 C 1.53284 * 109.51709 * 239.89712 * 2 1 3 5 5 N 1.47168 * 108.55841 * 187.04757 * 4 2 1 6 6 C 1.34771 * 121.07294 * 231.22859 * 5 4 2 7 7 O 1.21286 * 119.99525 * 185.26048 * 6 5 4 8 8 C 1.50696 * 120.00603 * 5.25671 * 6 5 4 9 9 C 1.52996 * 110.01786 * 296.19453 * 8 6 5 10 10 C 1.54270 * 110.03164 * 57.58682 * 8 6 5 11 11 C 1.54960 * 104.16200 * 95.75525 * 10 8 6 12 12 C 1.54890 * 102.77759 * 37.88687 * 11 10 8 13 13 C 1.53874 * 110.03263 * 174.80296 * 8 6 5 14 14 C 1.47327 * 117.84296 * 51.49950 * 5 4 2 15 15 C 1.52766 * 108.21777 * 310.54187 * 14 5 4 16 16 C 1.54373 * 110.53890 * 286.68715 * 15 14 5 17 17 C 1.54465 * 102.87329 * 207.58614 * 16 15 14 18 18 N 1.47083 * 107.29280 * 21.49717 * 17 16 15 19 19 C 1.36936 * 125.63117 * 180.99256 * 18 17 16 20 20 H 1.07995 * 119.99935 * 180.02562 * 19 18 17 21 21 C 1.38817 * 119.99864 * 0.02562 * 19 18 17 22 22 N 1.31619 * 120.00202 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99778 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47205 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47106 * 120.00268 * 23 21 19 26 26 H 1.48496 * 109.47167 * 239.99999 * 23 21 19 27 27 C 1.47575 * 108.73887 * 0.99970 * 18 17 16 28 28 O 1.41886 * 111.39124 * 50.23197 * 15 14 5 29 29 H 1.09005 * 109.46746 * 180.10334 * 1 2 3 30 30 H 1.08994 * 109.47220 * 300.10017 * 1 2 3 31 31 H 1.09001 * 109.46758 * 60.10419 * 1 2 3 32 32 H 1.08999 * 109.62014 * 67.32647 * 4 2 1 33 33 H 1.09003 * 109.62172 * 306.76976 * 4 2 1 34 34 H 1.09006 * 109.47139 * 53.96824 * 9 8 6 35 35 H 1.09000 * 109.47215 * 293.96798 * 9 8 6 36 36 H 1.08999 * 109.46977 * 173.96772 * 9 8 6 37 37 H 1.08994 * 110.48577 * 214.40630 * 10 8 6 38 38 H 1.09005 * 110.48505 * 337.04724 * 10 8 6 39 39 H 1.09008 * 110.71914 * 279.57772 * 11 10 8 40 40 H 1.09000 * 110.76551 * 156.22292 * 11 10 8 41 41 H 1.09002 * 110.48441 * 203.40657 * 12 11 10 42 42 H 1.08993 * 110.48544 * 80.76094 * 12 11 10 43 43 H 1.08995 * 110.03698 * 359.95026 * 13 8 6 44 44 H 1.09002 * 110.03025 * 121.33934 * 13 8 6 45 45 H 1.09004 * 109.64194 * 70.28151 * 14 5 4 46 46 H 1.09000 * 109.64259 * 190.91554 * 14 5 4 47 47 H 1.08996 * 110.73694 * 325.93291 * 16 15 14 48 48 H 1.09010 * 110.73186 * 89.24585 * 16 15 14 49 49 H 1.09004 * 109.87929 * 262.07392 * 17 16 15 50 50 H 1.09002 * 110.00070 * 140.99302 * 17 16 15 51 51 H 0.96991 * 120.00372 * 179.97438 * 22 21 19 52 52 H 1.08996 * 110.37489 * 217.84652 * 27 18 17 53 53 H 1.08998 * 110.37414 * 95.49294 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0421 -0.7246 -1.2499 5 7 3.5036 -0.8621 -1.1458 6 6 4.3122 -0.4737 -2.1516 7 8 5.5051 -0.6828 -2.0858 8 6 3.7344 0.2203 -3.3579 9 6 2.7851 -0.7226 -4.0999 10 6 2.9811 1.4948 -2.9240 11 6 4.0197 2.6301 -3.1074 12 6 4.7606 2.2108 -4.4014 13 6 4.8656 0.6752 -4.2966 14 6 4.0537 -1.4438 0.0910 15 6 3.4216 -0.7225 1.2802 16 6 4.0036 0.7002 1.4224 17 6 3.8570 0.9825 2.9340 18 7 3.7490 -0.3177 3.6131 19 6 3.5861 -0.5031 4.9600 20 1 3.5176 -1.5027 5.3631 21 6 3.5090 0.5938 5.8073 22 7 3.5921 1.8120 5.3159 23 14 3.2861 0.3409 7.6446 24 1 3.2209 -1.1129 7.9398 25 1 4.4341 0.9418 8.3699 26 1 2.0266 0.9929 8.0847 27 6 3.8455 -1.3895 2.6032 28 8 2.0081 -0.6777 1.1664 29 1 -0.3633 -1.0277 0.0019 30 1 -0.3633 0.5154 0.8890 31 1 -0.3633 0.5122 -0.8909 32 1 1.7913 -0.1444 -2.1379 33 1 1.5851 -1.7122 -1.3135 34 1 2.0357 -1.1037 -3.4061 35 1 3.3520 -1.5554 -4.5160 36 1 2.2912 -0.1804 -4.9062 37 1 2.1153 1.6628 -3.5645 38 1 2.6760 1.4208 -1.8802 39 1 4.7073 2.6639 -2.2623 40 1 3.5225 3.5908 -3.2410 41 1 5.7533 2.6597 -4.4350 42 1 4.1826 2.4944 -5.2808 43 1 5.8327 0.3948 -3.8792 44 1 4.7387 0.2236 -5.2805 45 1 3.8146 -2.5064 0.1341 46 1 5.1349 -1.3072 0.1108 47 1 5.0524 0.7195 1.1262 48 1 3.4233 1.4147 0.8384 49 1 2.9578 1.5713 3.1156 50 1 4.7320 1.5200 3.2994 51 1 3.5379 2.5785 5.9079 52 1 3.1674 -2.2062 2.8507 53 1 4.8704 -1.7539 2.5332 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071195473.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:33 Heat of formation + Delta-G solvation = -65.162436 kcal Electronic energy + Delta-G solvation = -32394.935053 eV Core-core repulsion = 28459.603191 eV Total energy + Delta-G solvation = -3935.331862 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.29346 -40.63720 -38.24189 -38.01106 -35.93600 -34.80405 -33.05181 -32.42582 -31.08753 -30.10752 -29.58637 -27.64355 -27.36584 -26.25160 -25.44245 -23.15757 -22.60448 -22.04361 -21.66444 -20.56374 -19.66029 -18.98393 -17.94485 -17.61614 -17.49044 -16.82984 -16.74984 -16.18326 -15.79776 -15.71068 -15.47835 -15.24461 -15.10692 -14.70161 -14.39965 -14.18928 -14.08612 -14.00871 -13.69073 -13.54963 -13.19779 -13.12906 -12.99394 -12.90567 -12.82310 -12.78613 -12.41373 -12.20639 -12.09206 -12.01007 -11.99497 -11.92199 -11.88690 -11.81127 -11.71385 -11.65250 -11.39071 -11.34488 -10.92732 -10.73197 -10.57679 -9.54644 -8.93457 -7.86122 -5.22130 1.44823 1.46486 1.54090 1.57042 1.80929 2.47951 2.60434 3.30445 3.33204 3.43382 3.51453 3.56490 3.66670 3.80500 3.83861 3.91061 4.01436 4.06551 4.13665 4.32307 4.35107 4.40039 4.42668 4.46028 4.47019 4.58740 4.62847 4.67714 4.72478 4.74387 4.74968 4.82114 4.86776 4.89348 4.93077 5.00477 5.03465 5.06639 5.10084 5.14201 5.22326 5.25104 5.33001 5.34168 5.36608 5.41358 5.51435 5.55137 5.68008 6.15183 6.32015 6.38366 7.06954 7.07774 7.73179 8.38346 9.25070 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018965 B = 0.003339 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.045894 B = 8383.240308 C = 8610.254946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.058 3.942 3 H 0.053 0.947 4 C 0.070 3.930 5 N -0.608 5.608 6 C 0.522 3.478 7 O -0.582 6.582 8 C -0.080 4.080 9 C -0.147 4.147 10 C -0.121 4.121 11 C -0.131 4.131 12 C -0.116 4.116 13 C -0.116 4.116 14 C 0.106 3.894 15 C 0.112 3.888 16 C -0.147 4.147 17 C 0.199 3.801 18 N -0.621 5.621 19 C -0.240 4.240 20 H 0.085 0.915 21 C -0.067 4.067 22 N -0.953 5.953 23 Si 0.982 3.018 24 H -0.264 1.264 25 H -0.292 1.292 26 H -0.291 1.291 27 C 0.145 3.855 28 O -0.369 6.369 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.109 0.891 32 H 0.137 0.863 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.063 0.937 39 H 0.037 0.963 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.091 0.909 43 H 0.054 0.946 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.063 0.937 48 H 0.074 0.926 49 H 0.010 0.990 50 H 0.003 0.997 51 H 0.246 0.754 52 H 0.053 0.947 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.903 -2.519 -24.838 25.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.000 4.000 3 H 0.071 0.929 4 C -0.051 4.051 5 N -0.340 5.340 6 C 0.312 3.688 7 O -0.462 6.462 8 C -0.083 4.083 9 C -0.204 4.204 10 C -0.158 4.158 11 C -0.168 4.168 12 C -0.154 4.154 13 C -0.154 4.154 14 C -0.018 4.018 15 C 0.071 3.929 16 C -0.186 4.186 17 C 0.074 3.926 18 N -0.347 5.347 19 C -0.369 4.369 20 H 0.103 0.897 21 C -0.260 4.260 22 N -0.603 5.603 23 Si 0.810 3.190 24 H -0.188 1.188 25 H -0.219 1.219 26 H -0.218 1.218 27 C 0.020 3.980 28 O -0.289 6.289 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.127 0.873 32 H 0.155 0.845 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.117 0.883 37 H 0.133 0.867 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.105 0.895 41 H 0.078 0.922 42 H 0.109 0.891 43 H 0.073 0.927 44 H 0.106 0.894 45 H 0.106 0.894 46 H 0.102 0.898 47 H 0.082 0.918 48 H 0.092 0.908 49 H 0.028 0.972 50 H 0.022 0.978 51 H 0.055 0.945 52 H 0.072 0.928 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.415 -2.626 -24.490 25.452 hybrid contribution 0.671 0.328 1.641 1.802 sum -5.745 -2.299 -22.849 23.672 Atomic orbital electron populations 1.21738 0.90207 1.03841 1.03637 1.22827 0.97068 0.95315 0.84771 0.92886 1.23121 0.78479 1.03358 1.00168 1.48165 1.07899 1.62037 1.15933 1.21272 0.85852 0.77236 0.84459 1.90636 1.17481 1.57652 1.80384 1.21461 0.97889 0.96797 0.92168 1.22224 0.98319 0.98624 1.01200 1.22812 0.98984 0.91806 1.02182 1.22545 0.97653 0.99164 0.97482 1.22336 1.00614 0.94231 0.98209 1.22258 0.97411 0.96748 0.98942 1.21949 0.99337 0.97840 0.82654 1.22112 0.81841 0.94543 0.94451 1.23133 1.00321 0.97715 0.97401 1.20744 0.97162 0.87160 0.87502 1.44710 1.85736 1.01590 1.02634 1.19520 1.41955 0.93318 0.82068 0.89720 1.25684 1.02561 0.95017 1.02739 1.70206 1.58139 0.97569 1.34357 0.84958 0.76728 0.77901 0.79432 1.18800 1.21928 1.21832 1.21527 0.98138 0.91762 0.86607 1.87880 1.19398 1.77180 1.44420 0.90903 0.93243 0.87294 0.84527 0.88823 0.90389 0.92486 0.88302 0.86669 0.91798 0.94439 0.89489 0.92201 0.89055 0.92713 0.89445 0.89431 0.89755 0.91847 0.90785 0.97223 0.97841 0.94474 0.92835 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.57 71.98 0.69 -1.89 16 2 C 0.06 1.45 3.03 30.69 0.09 1.54 16 3 H 0.05 1.45 5.33 -2.39 -0.01 1.44 16 4 C 0.07 1.33 3.40 86.35 0.29 1.62 16 5 N -0.61 -15.60 2.85 -817.90 -2.33 -17.93 16 6 C 0.52 14.09 6.48 87.66 0.57 14.66 16 7 O -0.58 -20.76 14.74 -3.05 -0.04 -20.80 16 8 C -0.08 -1.43 0.61 -52.21 -0.03 -1.46 16 9 C -0.15 -1.66 7.84 71.98 0.56 -1.09 16 10 C -0.12 -1.81 4.52 31.70 0.14 -1.67 16 11 C -0.13 -2.27 6.91 31.91 0.22 -2.05 16 12 C -0.12 -1.79 6.83 31.67 0.22 -1.57 16 13 C -0.12 -2.15 6.05 31.32 0.19 -1.96 16 14 C 0.11 3.26 5.31 86.14 0.46 3.72 16 15 C 0.11 4.12 0.84 -10.03 -0.01 4.11 16 16 C -0.15 -6.04 5.88 31.56 0.19 -5.86 16 17 C 0.20 10.62 5.39 86.77 0.47 11.08 16 18 N -0.62 -33.73 3.40 -692.75 -2.36 -36.09 16 19 C -0.24 -14.00 10.28 84.03 0.86 -13.14 16 20 H 0.08 4.70 7.83 -2.91 -0.02 4.68 16 21 C -0.07 -3.98 5.49 84.86 0.47 -3.51 16 22 N -0.95 -59.55 10.31 21.65 0.22 -59.33 16 23 Si 0.98 47.17 29.55 68.60 2.03 49.20 16 24 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 26 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 27 C 0.15 6.30 6.42 86.55 0.56 6.85 16 28 O -0.37 -13.15 9.92 -148.95 -1.48 -14.62 16 29 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.14 1.72 3.29 -2.39 -0.01 1.71 16 33 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.08 0.75 5.01 -2.38 -0.01 0.74 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.10 0.60 8.01 -2.39 -0.02 0.58 16 37 H 0.12 0.95 7.77 -2.39 -0.02 0.93 16 38 H 0.06 1.15 4.87 -2.38 -0.01 1.14 16 39 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.05 1.42 6.41 -2.39 -0.02 1.40 16 44 H 0.09 1.25 7.67 -2.39 -0.02 1.23 16 45 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 46 H 0.08 2.90 6.92 -2.39 -0.02 2.88 16 47 H 0.06 2.59 7.84 -2.39 -0.02 2.57 16 48 H 0.07 2.81 6.08 -2.38 -0.01 2.80 16 49 H 0.01 0.57 7.38 -2.38 -0.02 0.55 16 50 H 0.00 0.20 7.50 -2.39 -0.02 0.19 16 51 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 52 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 53 H 0.05 1.88 8.00 -2.39 -0.02 1.86 16 Total: -1.00 -77.53 384.71 2.87 -74.66 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.89 Total: 15.54 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 5.93 Total: 9.38 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -4.46 Total: -113.35 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -1.52 Total: -35.43 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -77.53 2.87 -74.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071195473.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.495 kcal (2) G-P(sol) polarization free energy of solvation -77.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds