Wall clock time and date at job start Tue Mar 31 2020 21:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.51211 * 2 1 4 4 C 1.53282 * 109.50393 * 239.90632 * 2 1 3 5 5 N 1.47164 * 108.52832 * 187.18721 * 4 2 1 6 6 C 1.34783 * 121.05832 * 231.10060 * 5 4 2 7 7 O 1.21286 * 120.00140 * 181.72799 * 6 5 4 8 8 C 1.50695 * 119.99934 * 1.73056 * 6 5 4 9 9 C 1.52996 * 110.02041 * 299.94290 * 8 6 5 10 10 C 1.54271 * 110.07289 * 61.35891 * 8 6 5 11 11 C 1.54889 * 104.19613 * 95.69975 * 10 8 6 12 12 C 1.54885 * 102.74952 * 37.93852 * 11 10 8 13 13 C 1.53877 * 110.03246 * 178.54876 * 8 6 5 14 14 C 1.47302 * 117.88459 * 51.37969 * 5 4 2 15 15 C 1.52939 * 108.17642 * 310.28521 * 14 5 4 16 16 C 1.54491 * 110.02107 * 173.16365 * 15 14 5 17 17 C 1.55019 * 101.53123 * 153.17728 * 16 15 14 18 18 N 1.47487 * 104.90674 * 323.64544 * 17 16 15 19 19 C 1.36929 * 125.66493 * 204.02916 * 18 17 16 20 20 H 1.08007 * 120.00556 * 156.80984 * 19 18 17 21 21 C 1.38820 * 120.00032 * 336.81010 * 19 18 17 22 22 N 1.31618 * 119.99746 * 160.92634 * 21 19 18 23 23 Si 1.86795 * 119.99852 * 340.92941 * 21 19 18 24 24 H 1.48498 * 109.47356 * 87.61754 * 23 21 19 25 25 H 1.48498 * 109.47150 * 207.61788 * 23 21 19 26 26 H 1.48503 * 109.47105 * 327.61662 * 23 21 19 27 27 C 1.47188 * 108.67146 * 24.00469 * 18 17 16 28 28 O 1.42061 * 111.02671 * 50.67059 * 15 14 5 29 29 H 1.08994 * 109.47801 * 180.09196 * 1 2 3 30 30 H 1.09007 * 109.46669 * 300.09422 * 1 2 3 31 31 H 1.09002 * 109.47158 * 60.08624 * 1 2 3 32 32 H 1.09001 * 109.62673 * 67.48009 * 4 2 1 33 33 H 1.08999 * 109.78718 * 306.99378 * 4 2 1 34 34 H 1.09006 * 109.47113 * 292.72839 * 9 8 6 35 35 H 1.08996 * 109.47524 * 172.72725 * 9 8 6 36 36 H 1.08999 * 109.47406 * 52.72269 * 9 8 6 37 37 H 1.09004 * 110.48479 * 214.37391 * 10 8 6 38 38 H 1.08993 * 110.48762 * 337.01683 * 10 8 6 39 39 H 1.09007 * 110.75268 * 279.62627 * 11 10 8 40 40 H 1.09001 * 110.76002 * 156.25781 * 11 10 8 41 41 H 1.09003 * 110.48677 * 203.37920 * 12 11 10 42 42 H 1.09001 * 110.48374 * 80.74133 * 12 11 10 43 43 H 1.08998 * 110.03168 * 359.95587 * 13 8 6 44 44 H 1.08998 * 110.02854 * 121.38507 * 13 8 6 45 45 H 1.09001 * 109.68114 * 70.07723 * 14 5 4 46 46 H 1.08999 * 109.68207 * 190.61860 * 14 5 4 47 47 H 1.09005 * 111.01620 * 271.24623 * 16 15 14 48 48 H 1.09005 * 111.01149 * 35.11450 * 16 15 14 49 49 H 1.08995 * 110.35369 * 204.78992 * 17 16 15 50 50 H 1.09000 * 110.44115 * 82.54095 * 17 16 15 51 51 H 0.97000 * 119.99251 * 180.02562 * 22 21 19 52 52 H 1.09003 * 109.90984 * 239.11884 * 27 18 17 53 53 H 1.09007 * 109.90801 * 117.85676 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0418 -0.7245 -1.2501 5 7 3.5029 -0.8648 -1.1441 6 6 4.3133 -0.4792 -2.1496 7 8 5.5127 -0.6324 -2.0547 8 6 3.7291 0.1424 -3.3919 9 6 2.7640 -0.8366 -4.0633 10 6 2.9918 1.4493 -3.0336 11 6 4.0381 2.5604 -3.2977 12 6 4.7620 2.0530 -4.5695 13 6 4.8546 0.5263 -4.3685 14 6 4.0511 -1.4459 0.0935 15 6 3.4232 -0.7164 1.2820 16 6 3.8363 -1.4036 2.6026 17 6 3.7443 -0.2261 3.6066 18 7 4.2029 0.9541 2.8503 19 6 4.7302 2.0951 3.3936 20 1 5.3673 2.7324 2.7982 21 6 4.4460 2.4328 4.7097 22 7 5.2159 3.2861 5.3511 23 14 2.9709 1.6760 5.5704 24 1 3.3686 0.3886 6.1945 25 1 2.4805 2.6045 6.6205 26 1 1.8909 1.4335 4.5804 27 6 4.0002 0.7016 1.4145 28 8 2.0079 -0.6774 1.1663 29 1 -0.3634 -1.0276 0.0016 30 1 -0.3633 0.5153 0.8892 31 1 -0.3633 0.5125 -0.8908 32 1 1.7934 -0.1428 -2.1378 33 1 1.5832 -1.7109 -1.3186 34 1 3.3221 -1.6891 -4.4507 35 1 2.2504 -0.3355 -4.8838 36 1 2.0318 -1.1829 -3.3339 37 1 2.1214 1.5846 -3.6757 38 1 2.6962 1.4452 -1.9846 39 1 4.7347 2.6413 -2.4631 40 1 3.5481 3.5154 -3.4872 41 1 5.7582 2.4895 -4.6413 42 1 4.1775 2.2858 -5.4596 43 1 5.8234 0.2637 -3.9435 44 1 4.7132 0.0151 -5.3207 45 1 3.8074 -2.5073 0.1401 46 1 5.1332 -1.3162 0.1119 47 1 3.1370 -2.1973 2.8657 48 1 4.8550 -1.7868 2.5418 49 1 4.3962 -0.4051 4.4617 50 1 2.7151 -0.0876 3.9377 51 1 5.0175 3.5217 6.2709 52 1 4.9526 0.7656 0.8882 53 1 3.2978 1.4279 1.0054 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071195474.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:37 Heat of formation + Delta-G solvation = -66.005671 kcal Electronic energy + Delta-G solvation = -32616.913760 eV Core-core repulsion = 28681.545333 eV Total energy + Delta-G solvation = -3935.368428 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.33692 -40.75164 -38.28148 -38.20158 -36.00470 -34.93010 -33.47153 -32.48185 -31.30485 -30.17682 -29.68966 -27.96590 -27.49062 -26.18178 -25.33915 -23.27858 -22.74204 -22.49915 -21.70127 -20.49975 -19.70561 -19.10418 -18.04085 -17.67491 -17.58073 -17.23859 -16.78757 -16.21392 -16.12935 -15.68749 -15.67620 -15.37367 -15.14449 -14.79279 -14.57884 -14.31343 -14.26025 -13.98259 -13.95171 -13.54178 -13.48817 -13.22490 -13.07917 -13.00431 -12.90753 -12.77512 -12.65884 -12.39744 -12.25136 -12.07286 -12.03582 -11.98097 -11.90278 -11.81795 -11.74382 -11.53500 -11.42555 -11.39201 -11.01778 -10.89650 -10.60494 -9.58925 -9.09317 -8.25475 -5.58093 1.26288 1.34401 1.45510 1.52429 1.79925 2.35382 2.51155 2.98669 3.11811 3.31697 3.47097 3.50593 3.60420 3.63875 3.68180 3.82991 3.99347 4.00771 4.08497 4.26855 4.29547 4.33595 4.37351 4.40353 4.44777 4.53108 4.58087 4.60197 4.61522 4.67061 4.71144 4.73511 4.81794 4.84634 4.87887 4.89151 4.96430 4.99855 5.02914 5.07086 5.10895 5.11681 5.20281 5.23361 5.30964 5.32126 5.35051 5.49086 5.60116 6.02114 6.22595 6.29203 6.66472 7.06475 7.43505 8.01416 8.94913 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014703 B = 0.004093 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.940995 B = 6839.974289 C = 7425.985712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.056 3.944 3 H 0.044 0.956 4 C 0.071 3.929 5 N -0.612 5.612 6 C 0.519 3.481 7 O -0.583 6.583 8 C -0.080 4.080 9 C -0.147 4.147 10 C -0.117 4.117 11 C -0.133 4.133 12 C -0.116 4.116 13 C -0.117 4.117 14 C 0.105 3.895 15 C 0.108 3.892 16 C -0.105 4.105 17 C 0.104 3.896 18 N -0.623 5.623 19 C -0.244 4.244 20 H 0.047 0.953 21 C -0.029 4.029 22 N -0.956 5.956 23 Si 0.955 3.045 24 H -0.267 1.267 25 H -0.303 1.303 26 H -0.268 1.268 27 C 0.124 3.876 28 O -0.367 6.367 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.105 0.895 32 H 0.133 0.867 33 H 0.104 0.896 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.118 0.882 38 H 0.059 0.941 39 H 0.029 0.971 40 H 0.086 0.914 41 H 0.057 0.943 42 H 0.094 0.906 43 H 0.052 0.948 44 H 0.090 0.910 45 H 0.103 0.897 46 H 0.079 0.921 47 H 0.113 0.887 48 H 0.098 0.902 49 H 0.046 0.954 50 H 0.029 0.971 51 H 0.265 0.735 52 H 0.016 0.984 53 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.387 -11.712 -22.871 28.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.002 4.002 3 H 0.062 0.938 4 C -0.051 4.051 5 N -0.344 5.344 6 C 0.310 3.690 7 O -0.463 6.463 8 C -0.083 4.083 9 C -0.204 4.204 10 C -0.154 4.154 11 C -0.171 4.171 12 C -0.153 4.153 13 C -0.154 4.154 14 C -0.019 4.019 15 C 0.067 3.933 16 C -0.143 4.143 17 C -0.020 4.020 18 N -0.350 5.350 19 C -0.373 4.373 20 H 0.065 0.935 21 C -0.224 4.224 22 N -0.602 5.602 23 Si 0.783 3.217 24 H -0.192 1.192 25 H -0.231 1.231 26 H -0.193 1.193 27 C -0.001 4.001 28 O -0.286 6.286 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.123 0.877 32 H 0.151 0.849 33 H 0.122 0.878 34 H 0.077 0.923 35 H 0.117 0.883 36 H 0.100 0.900 37 H 0.137 0.863 38 H 0.077 0.923 39 H 0.048 0.952 40 H 0.104 0.896 41 H 0.076 0.924 42 H 0.112 0.888 43 H 0.071 0.929 44 H 0.109 0.891 45 H 0.121 0.879 46 H 0.097 0.903 47 H 0.132 0.868 48 H 0.116 0.884 49 H 0.064 0.936 50 H 0.046 0.954 51 H 0.074 0.926 52 H 0.034 0.966 53 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -12.810 -11.727 -22.534 28.450 hybrid contribution 0.527 0.662 1.157 1.434 sum -12.283 -11.066 -21.377 27.024 Atomic orbital electron populations 1.21738 0.89613 1.04254 1.03677 1.22832 0.97385 0.95105 0.84875 0.93759 1.23142 0.78345 1.03653 0.99934 1.48215 1.08038 1.62171 1.16008 1.21299 0.86009 0.76511 0.85222 1.90645 1.17147 1.57226 1.81309 1.21460 0.97877 0.97240 0.91729 1.22257 0.98163 0.98049 1.01901 1.22746 0.99029 0.91567 1.02105 1.22535 0.97715 0.99315 0.97501 1.22332 1.00591 0.94239 0.98165 1.22270 0.97512 0.97015 0.98632 1.22096 0.99311 0.98187 0.82266 1.22094 0.81952 0.93508 0.95780 1.22700 1.03263 0.96971 0.91369 1.22118 0.97093 0.87060 0.95693 1.44822 1.74022 1.14088 1.02036 1.18494 1.22160 1.00082 0.96518 0.93530 1.25749 1.00891 0.98322 0.97444 1.69942 1.39309 1.39258 1.11711 0.85807 0.81131 0.77400 0.77389 1.19232 1.23080 1.19316 1.21829 0.96687 0.96021 0.85569 1.87832 1.19027 1.77064 1.44667 0.90072 0.93054 0.87679 0.84913 0.87839 0.92286 0.88325 0.90039 0.86345 0.92269 0.95174 0.89565 0.92439 0.88750 0.92885 0.89096 0.87891 0.90266 0.86828 0.88371 0.93621 0.95374 0.92560 0.96596 0.95813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.57 71.98 0.69 -1.49 16 2 C 0.06 1.30 3.05 30.69 0.09 1.40 16 3 H 0.04 1.27 5.57 -2.39 -0.01 1.25 16 4 C 0.07 1.23 3.29 86.35 0.28 1.51 16 5 N -0.61 -15.41 2.88 -817.64 -2.35 -17.76 16 6 C 0.52 14.53 6.47 87.65 0.57 15.10 16 7 O -0.58 -21.84 14.70 -3.05 -0.04 -21.88 16 8 C -0.08 -1.51 0.61 -52.20 -0.03 -1.54 16 9 C -0.15 -1.61 7.83 71.98 0.56 -1.05 16 10 C -0.12 -1.97 4.53 31.67 0.14 -1.83 16 11 C -0.13 -2.72 6.91 31.88 0.22 -2.50 16 12 C -0.12 -2.03 6.83 31.67 0.22 -1.81 16 13 C -0.12 -2.32 6.05 31.32 0.19 -2.14 16 14 C 0.10 2.99 5.23 86.21 0.45 3.45 16 15 C 0.11 3.59 0.81 -10.08 -0.01 3.58 16 16 C -0.10 -3.44 6.21 31.79 0.20 -3.25 16 17 C 0.10 4.64 4.75 86.88 0.41 5.06 16 18 N -0.62 -32.39 3.16 -692.46 -2.19 -34.58 16 19 C -0.24 -15.09 10.58 84.04 0.89 -14.20 16 20 H 0.05 3.18 8.06 -2.91 -0.02 3.15 16 21 C -0.03 -1.79 5.46 84.86 0.46 -1.33 16 22 N -0.96 -62.51 13.97 21.65 0.30 -62.21 16 23 Si 0.95 48.89 24.33 68.60 1.67 50.56 16 24 H -0.27 -12.75 6.80 99.48 0.68 -12.07 16 25 H -0.30 -15.38 7.11 99.48 0.71 -14.67 16 26 H -0.27 -13.43 6.41 99.48 0.64 -12.79 16 27 C 0.12 5.46 6.34 86.47 0.55 6.01 16 28 O -0.37 -11.23 9.90 -148.97 -1.48 -12.70 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.13 1.62 3.34 -2.39 -0.01 1.61 16 33 H 0.10 1.34 8.07 -2.39 -0.02 1.32 16 34 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.10 0.58 7.98 -2.39 -0.02 0.56 16 36 H 0.08 0.71 4.79 -2.39 -0.01 0.70 16 37 H 0.12 1.10 7.74 -2.38 -0.02 1.08 16 38 H 0.06 1.20 5.35 -2.39 -0.01 1.19 16 39 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.05 1.47 6.39 -2.39 -0.02 1.45 16 44 H 0.09 1.36 7.67 -2.39 -0.02 1.34 16 45 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 46 H 0.08 2.69 6.86 -2.39 -0.02 2.67 16 47 H 0.11 3.00 8.14 -2.38 -0.02 2.98 16 48 H 0.10 2.98 8.01 -2.38 -0.02 2.96 16 49 H 0.05 2.13 7.05 -2.39 -0.02 2.11 16 50 H 0.03 1.30 5.24 -2.39 -0.01 1.29 16 51 H 0.27 16.31 8.31 -92.71 -0.77 15.54 16 52 H 0.02 0.77 7.63 -2.39 -0.02 0.75 16 53 H 0.02 1.09 6.01 -2.38 -0.01 1.07 16 Total: -1.00 -82.17 379.27 2.60 -79.57 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.80 Total: 14.04 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 5.89 Total: 4.97 kcal Atomic # 7 Polarization: -110.31 SS G_CDS: -4.24 Total: -114.55 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -1.52 Total: -34.58 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: 1.67 Total: 50.56 kcal Total: -82.17 2.60 -79.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071195474.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.562 kcal (2) G-P(sol) polarization free energy of solvation -82.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds