Wall clock time and date at job start Tue Mar 31 2020 21:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.51023 * 2 1 4 4 C 1.53292 * 109.50753 * 120.09051 * 2 1 3 5 5 N 1.47154 * 108.56079 * 172.95244 * 4 2 1 6 6 C 1.34783 * 121.07340 * 128.76116 * 5 4 2 7 7 O 1.21282 * 120.00280 * 175.31453 * 6 5 4 8 8 C 1.50706 * 119.99638 * 355.31153 * 6 5 4 9 9 C 1.53000 * 110.01354 * 64.23996 * 8 6 5 10 10 C 1.54266 * 110.03035 * 302.79589 * 8 6 5 11 11 C 1.54899 * 104.19209 * 217.10456 * 10 8 6 12 12 C 1.54893 * 102.74621 * 37.94480 * 11 10 8 13 13 C 1.53870 * 110.02963 * 185.62925 * 8 6 5 14 14 C 1.47337 * 117.85611 * 309.03504 * 5 4 2 15 15 C 1.51945 * 108.61601 * 48.88188 * 14 5 4 16 16 C 1.54359 * 110.49237 * 186.50472 * 15 14 5 17 17 C 1.54462 * 102.86821 * 207.76476 * 16 15 14 18 18 N 1.47084 * 107.30340 * 21.48170 * 17 16 15 19 19 C 1.36932 * 125.62784 * 181.03967 * 18 17 16 20 20 H 1.07998 * 120.00074 * 179.97438 * 19 18 17 21 21 C 1.38809 * 120.00337 * 359.95942 * 19 18 17 22 22 N 1.31617 * 119.99859 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00333 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47060 * 89.99467 * 23 21 19 25 25 H 1.48492 * 109.47481 * 209.99619 * 23 21 19 26 26 H 1.48506 * 109.46969 * 330.00070 * 23 21 19 27 27 C 1.47570 * 108.74033 * 1.00184 * 18 17 16 28 28 O 1.41887 * 111.51933 * 310.15246 * 15 14 5 29 29 H 1.08997 * 109.47275 * 299.90699 * 1 2 3 30 30 H 1.09000 * 109.46953 * 59.90986 * 1 2 3 31 31 H 1.09007 * 109.46825 * 179.90524 * 1 2 3 32 32 H 1.08994 * 109.61954 * 53.23361 * 4 2 1 33 33 H 1.08999 * 109.77497 * 292.76889 * 4 2 1 34 34 H 1.08999 * 109.47519 * 65.83093 * 9 8 6 35 35 H 1.09000 * 109.46619 * 185.83194 * 9 8 6 36 36 H 1.09001 * 109.47430 * 305.82266 * 9 8 6 37 37 H 1.08996 * 110.48785 * 335.77960 * 10 8 6 38 38 H 1.08996 * 110.48611 * 98.43155 * 10 8 6 39 39 H 1.08995 * 110.75410 * 279.62870 * 11 10 8 40 40 H 1.08994 * 110.75153 * 156.26034 * 11 10 8 41 41 H 1.08994 * 110.48275 * 203.37920 * 12 11 10 42 42 H 1.08995 * 110.59849 * 80.79387 * 12 11 10 43 43 H 1.09005 * 110.03020 * 238.57236 * 13 8 6 44 44 H 1.09005 * 110.03588 * 359.95190 * 13 8 6 45 45 H 1.09001 * 109.67867 * 168.67496 * 14 5 4 46 46 H 1.08999 * 109.67765 * 289.22154 * 14 5 4 47 47 H 1.08992 * 110.73454 * 326.11116 * 16 15 14 48 48 H 1.08999 * 110.73018 * 89.42054 * 16 15 14 49 49 H 1.08996 * 109.88097 * 262.04923 * 17 16 15 50 50 H 1.09000 * 109.99905 * 140.97723 * 17 16 15 51 51 H 0.97009 * 120.00296 * 180.02562 * 22 21 19 52 52 H 1.08998 * 110.37405 * 217.85849 * 27 18 17 53 53 H 1.08998 * 110.46801 * 95.56398 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0419 -0.7244 1.2502 5 7 3.5033 -0.8621 1.1464 6 6 4.3119 -0.4733 2.1522 7 8 5.5060 -0.6732 2.0822 8 6 3.7320 0.2098 3.3640 9 6 2.7999 -0.7478 4.1091 10 6 2.9601 1.4757 2.9381 11 6 3.2549 2.4973 4.0645 12 6 4.7385 2.2112 4.4056 13 6 4.8627 0.6774 4.2969 14 6 4.0546 -1.4329 -0.0950 15 6 3.4228 -0.7203 -1.2789 16 6 3.8460 -1.3921 -2.6027 17 6 3.7675 -0.2309 -3.6182 18 7 3.8536 1.0239 -2.8556 19 6 3.8007 2.2851 -3.3862 20 1 3.8727 3.1467 -2.7390 21 6 3.6548 2.4563 -4.7559 22 7 3.5679 1.4063 -5.5448 23 14 3.5818 4.1768 -5.4798 24 1 4.9548 4.6292 -5.8202 25 1 2.7468 4.1624 -6.7075 26 1 2.9862 5.1067 -4.4868 27 6 4.0056 0.6991 -1.4241 28 8 2.0091 -0.6770 -1.1665 29 1 -0.3634 0.5124 0.8908 30 1 -0.3633 0.5152 -0.8892 31 1 -0.3633 -1.0277 -0.0017 32 1 1.5849 -1.7119 1.3139 33 1 1.7909 -0.1469 2.1398 34 1 3.3799 -1.5759 4.5165 35 1 2.3064 -0.2153 4.9220 36 1 2.0494 -1.1344 3.4196 37 1 3.3307 1.8449 1.9818 38 1 1.8914 1.2695 2.8803 39 1 2.6173 2.3134 4.9292 40 1 3.1316 3.5178 3.7023 41 1 4.9675 2.5417 5.4186 42 1 5.3979 2.6991 3.6879 43 1 4.7469 0.2228 5.2809 44 1 5.8308 0.4095 3.8738 45 1 5.1351 -1.2909 -0.1162 46 1 3.8227 -2.4968 -0.1443 47 1 4.8639 -1.7753 -2.5327 48 1 3.1507 -2.1873 -2.8713 49 1 2.8209 -0.2729 -4.1569 50 1 4.5974 -0.2944 -4.3220 51 1 3.4663 1.5258 -6.5021 52 1 3.4428 1.4048 -0.8130 53 1 5.0580 0.7082 -1.1408 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071195476.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:45 Heat of formation + Delta-G solvation = -66.167297 kcal Electronic energy + Delta-G solvation = -32497.832082 eV Core-core repulsion = 28562.456646 eV Total energy + Delta-G solvation = -3935.375436 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.26697 -40.65713 -38.34549 -37.97577 -35.92111 -34.89519 -33.05308 -32.32112 -31.11738 -29.93425 -29.58968 -27.72929 -27.46062 -26.43594 -25.45769 -23.20177 -22.48714 -21.92725 -21.66587 -20.51699 -19.71921 -18.99922 -17.95324 -17.93291 -17.35011 -16.81708 -16.45157 -16.24255 -15.96304 -15.76611 -15.52350 -15.34594 -15.11110 -14.81772 -14.43631 -14.10119 -14.00060 -13.92685 -13.61416 -13.44395 -13.22135 -13.13844 -13.01436 -12.93640 -12.83767 -12.74076 -12.55750 -12.24135 -12.09077 -12.06339 -12.05075 -12.02039 -11.89842 -11.77765 -11.71474 -11.62871 -11.41246 -11.30638 -10.93161 -10.73182 -10.57466 -9.54744 -8.94342 -7.88416 -5.24551 1.41594 1.44406 1.52705 1.53119 1.82144 2.45240 2.61197 3.27934 3.30324 3.45019 3.50284 3.59993 3.69241 3.72264 3.86987 3.89806 4.04731 4.08636 4.13690 4.29243 4.35977 4.39955 4.41801 4.48426 4.51388 4.54311 4.58224 4.62693 4.65974 4.73677 4.78210 4.88092 4.88317 4.89099 4.92838 4.98976 5.01587 5.08790 5.09754 5.13456 5.19123 5.25405 5.33034 5.34062 5.36638 5.44919 5.46506 5.60002 5.71814 6.14184 6.31113 6.36325 7.05549 7.06642 7.70991 8.36439 9.21976 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013533 B = 0.003901 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.447725 B = 7175.364578 C = 7757.582502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.060 3.940 3 H 0.043 0.957 4 C 0.069 3.931 5 N -0.609 5.609 6 C 0.519 3.481 7 O -0.583 6.583 8 C -0.079 4.079 9 C -0.144 4.144 10 C -0.119 4.119 11 C -0.115 4.115 12 C -0.126 4.126 13 C -0.115 4.115 14 C 0.105 3.895 15 C 0.109 3.891 16 C -0.119 4.119 17 C 0.192 3.808 18 N -0.619 5.619 19 C -0.247 4.247 20 H 0.074 0.926 21 C -0.061 4.061 22 N -0.948 5.948 23 Si 0.979 3.021 24 H -0.286 1.286 25 H -0.289 1.289 26 H -0.269 1.269 27 C 0.123 3.877 28 O -0.367 6.367 29 H 0.106 0.894 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.136 0.864 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.040 0.960 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.043 0.957 43 H 0.090 0.910 44 H 0.054 0.946 45 H 0.082 0.918 46 H 0.094 0.906 47 H 0.091 0.909 48 H 0.093 0.907 49 H 0.013 0.987 50 H 0.010 0.990 51 H 0.248 0.752 52 H 0.035 0.965 53 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.439 -5.029 23.749 25.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.002 3.998 3 H 0.061 0.939 4 C -0.053 4.053 5 N -0.341 5.341 6 C 0.309 3.691 7 O -0.463 6.463 8 C -0.082 4.082 9 C -0.201 4.201 10 C -0.156 4.156 11 C -0.152 4.152 12 C -0.163 4.163 13 C -0.153 4.153 14 C -0.019 4.019 15 C 0.068 3.932 16 C -0.157 4.157 17 C 0.067 3.933 18 N -0.345 5.345 19 C -0.376 4.376 20 H 0.092 0.908 21 C -0.254 4.254 22 N -0.596 5.596 23 Si 0.807 3.193 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.194 1.194 27 C -0.003 4.003 28 O -0.287 6.287 29 H 0.125 0.875 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.116 0.884 33 H 0.153 0.847 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.096 0.904 37 H 0.059 0.941 38 H 0.121 0.879 39 H 0.116 0.884 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.062 0.938 43 H 0.108 0.892 44 H 0.073 0.927 45 H 0.100 0.900 46 H 0.112 0.888 47 H 0.109 0.891 48 H 0.112 0.888 49 H 0.032 0.968 50 H 0.028 0.972 51 H 0.058 0.942 52 H 0.053 0.947 53 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -6.959 -5.128 23.386 24.933 hybrid contribution 0.811 1.062 -1.327 1.883 sum -6.148 -4.066 22.059 23.258 Atomic orbital electron populations 1.21724 0.90060 1.03965 1.03509 1.22757 0.97116 0.95037 0.84854 0.93894 1.23181 0.78450 1.03482 1.00137 1.48197 1.07949 1.62216 1.15759 1.21334 0.85919 0.77087 0.84717 1.90632 1.17380 1.57588 1.80691 1.21471 0.97904 0.96696 0.92136 1.22160 0.98463 0.98263 1.01203 1.22673 1.00657 0.93574 0.98691 1.22501 0.95954 0.98465 0.98299 1.22370 0.97251 0.94743 1.01973 1.22238 0.97395 0.96531 0.99090 1.21852 0.99291 0.98219 0.82503 1.21945 0.81993 0.94334 0.94938 1.22727 1.01999 0.98223 0.92778 1.20874 0.97775 0.83218 0.91413 1.44694 1.85832 1.02359 1.01575 1.19359 1.43163 0.83710 0.91369 0.90764 1.25640 1.02131 1.01362 0.96273 1.70187 1.57182 1.29055 1.03199 0.85077 0.77415 0.79095 0.77717 1.21245 1.21565 1.19414 1.22000 0.96343 0.95716 0.86233 1.87821 1.19270 1.76991 1.44594 0.87525 0.93412 0.90430 0.88407 0.84681 0.92251 0.88389 0.90358 0.94094 0.87887 0.88417 0.91177 0.89591 0.93816 0.89170 0.92727 0.89986 0.88753 0.89067 0.88840 0.96843 0.97228 0.94248 0.94701 0.97232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.57 71.98 0.69 -2.00 16 2 C 0.06 1.61 3.19 30.69 0.10 1.71 16 3 H 0.04 1.36 6.25 -2.39 -0.01 1.34 16 4 C 0.07 1.37 3.93 86.35 0.34 1.71 16 5 N -0.61 -16.36 2.96 -819.44 -2.42 -18.78 16 6 C 0.52 14.82 6.36 87.66 0.56 15.38 16 7 O -0.58 -21.66 14.74 -3.04 -0.04 -21.70 16 8 C -0.08 -1.53 0.61 -52.20 -0.03 -1.56 16 9 C -0.14 -1.74 7.85 71.98 0.57 -1.18 16 10 C -0.12 -2.07 4.60 31.67 0.15 -1.92 16 11 C -0.11 -1.61 6.91 31.89 0.22 -1.39 16 12 C -0.13 -2.19 6.83 31.67 0.22 -1.97 16 13 C -0.11 -2.29 6.05 31.32 0.19 -2.10 16 14 C 0.10 3.26 5.25 85.87 0.45 3.71 16 15 C 0.11 4.05 0.83 -10.30 -0.01 4.05 16 16 C -0.12 -4.64 6.12 31.55 0.19 -4.45 16 17 C 0.19 10.09 5.39 86.77 0.47 10.56 16 18 N -0.62 -34.11 3.40 -692.76 -2.36 -36.47 16 19 C -0.25 -14.68 10.28 84.03 0.86 -13.81 16 20 H 0.07 4.27 7.83 -2.91 -0.02 4.25 16 21 C -0.06 -3.60 5.49 84.86 0.47 -3.13 16 22 N -0.95 -58.84 10.30 21.65 0.22 -58.62 16 23 Si 0.98 47.25 29.55 68.60 2.03 49.27 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 25 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 26 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 27 C 0.12 5.60 6.18 86.55 0.53 6.14 16 28 O -0.37 -13.16 9.93 -148.95 -1.48 -14.63 16 29 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.14 1.88 2.53 -2.39 -0.01 1.87 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.08 0.79 5.09 -2.39 -0.01 0.78 16 37 H 0.04 1.00 7.85 -2.39 -0.02 0.98 16 38 H 0.10 1.22 6.13 -2.39 -0.01 1.20 16 39 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.09 1.14 8.14 -2.39 -0.02 1.13 16 42 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.09 1.37 7.67 -2.38 -0.02 1.36 16 44 H 0.05 1.49 6.41 -2.38 -0.02 1.47 16 45 H 0.08 2.88 6.88 -2.39 -0.02 2.86 16 46 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 47 H 0.09 3.21 7.99 -2.39 -0.02 3.19 16 48 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 49 H 0.01 0.79 7.38 -2.39 -0.02 0.77 16 50 H 0.01 0.55 7.49 -2.39 -0.02 0.54 16 51 H 0.25 14.89 8.31 -92.70 -0.77 14.12 16 52 H 0.03 1.59 6.09 -2.39 -0.01 1.58 16 53 H 0.01 0.48 7.80 -2.39 -0.02 0.46 16 Total: -1.00 -78.39 387.04 2.79 -75.60 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.89 Total: 15.61 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 5.96 Total: 9.73 kcal Atomic # 7 Polarization: -109.31 SS G_CDS: -4.56 Total: -113.87 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -1.52 Total: -36.34 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.27 kcal Total: -78.39 2.79 -75.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071195476.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.428 kcal (2) G-P(sol) polarization free energy of solvation -78.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds