Wall clock time and date at job start Tue Mar 31 2020 21:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 119.99981 * 2 1 4 4 C 1.50698 * 120.00062 * 179.97438 * 2 1 3 5 5 C 1.53003 * 109.47177 * 240.00020 * 4 2 1 6 6 C 1.53000 * 109.47193 * 0.02562 * 4 2 1 7 7 C 1.50696 * 109.47270 * 120.00221 * 4 2 1 8 8 O 1.21285 * 120.00259 * 5.71651 * 7 4 2 9 9 N 1.34781 * 120.00048 * 185.71549 * 7 4 2 10 10 C 1.47162 * 121.07616 * 354.61974 * 9 7 4 11 11 C 1.52866 * 108.75530 * 231.25675 * 10 9 7 12 12 H 1.09003 * 109.41040 * 67.07685 * 11 10 9 13 13 C 1.53004 * 109.57885 * 187.15614 * 11 10 9 14 14 O 1.43115 * 109.29725 * 307.16589 * 11 10 9 15 15 C 1.41878 * 114.43027 * 60.74371 * 14 11 10 16 16 C 1.54360 * 110.75779 * 63.55326 * 15 14 11 17 17 C 1.54465 * 102.88100 * 83.66824 * 16 15 14 18 18 N 1.47087 * 107.29564 * 21.49119 * 17 16 15 19 19 C 1.36943 * 125.63048 * 181.00099 * 18 17 16 20 20 H 1.07998 * 120.00020 * 179.97438 * 19 18 17 21 21 C 1.38812 * 119.99625 * 359.97438 * 19 18 17 22 22 N 1.31619 * 120.00362 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99600 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47332 * 60.00326 * 23 21 19 25 25 H 1.48502 * 109.47154 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47211 * 300.00101 * 23 21 19 27 27 C 1.47571 * 108.73907 * 0.99576 * 18 17 16 28 28 C 1.47330 * 121.07662 * 174.90098 * 9 7 4 29 29 H 1.07997 * 119.99952 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.00157 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47416 * 269.99883 * 3 2 1 32 32 H 1.09007 * 109.47601 * 150.00006 * 3 2 1 33 33 H 1.08995 * 109.47388 * 29.99824 * 3 2 1 34 34 H 1.08999 * 109.46979 * 76.59464 * 5 4 2 35 35 H 1.09003 * 109.47535 * 196.59246 * 5 4 2 36 36 H 1.08999 * 109.46879 * 316.59415 * 5 4 2 37 37 H 1.09000 * 109.46852 * 65.47190 * 6 4 2 38 38 H 1.09003 * 109.47189 * 185.47070 * 6 4 2 39 39 H 1.09001 * 109.46839 * 305.47005 * 6 4 2 40 40 H 1.08999 * 109.62515 * 351.02077 * 10 9 7 41 41 H 1.08997 * 109.63069 * 111.59645 * 10 9 7 42 42 H 1.09003 * 109.46634 * 179.88121 * 13 11 10 43 43 H 1.08996 * 109.47073 * 299.87518 * 13 11 10 44 44 H 1.08994 * 109.46868 * 59.88298 * 13 11 10 45 45 H 1.09001 * 110.72827 * 202.01157 * 16 15 14 46 46 H 1.08990 * 110.73050 * 325.31993 * 16 15 14 47 47 H 1.08999 * 109.87619 * 262.07130 * 17 16 15 48 48 H 1.08997 * 110.00701 * 140.98239 * 17 16 15 49 49 H 0.96996 * 120.00098 * 180.02562 * 22 21 19 50 50 H 1.08998 * 110.37340 * 217.85806 * 27 18 17 51 51 H 1.09001 * 110.46798 * 95.56186 * 27 18 17 52 52 H 1.08992 * 109.63692 * 250.54363 * 28 9 7 53 53 H 1.09005 * 109.63174 * 11.15421 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.9431 -1.3856 1.2499 6 6 1.0693 -2.4680 0.0005 7 6 2.9299 -1.3855 -1.2298 8 8 3.0153 -0.4322 -1.9748 9 7 3.6100 -2.5167 -1.5023 10 6 3.6179 -3.6447 -0.5572 11 6 5.0662 -4.0621 -0.3021 12 1 5.5834 -3.2665 0.2342 13 6 5.0909 -5.3426 0.5350 14 8 5.7182 -4.2970 -1.5543 15 6 5.7705 -3.1664 -2.4098 16 6 6.6099 -2.0376 -1.7740 17 6 8.0558 -2.4304 -2.1496 18 7 7.9774 -3.3245 -3.3149 19 6 9.0433 -3.9106 -3.9439 20 1 8.8805 -4.5546 -4.7954 21 6 10.3331 -3.6768 -3.4870 22 7 10.5315 -2.8923 -2.4489 23 14 11.7871 -4.4757 -4.3454 24 1 11.8248 -4.0397 -5.7645 25 1 13.0453 -4.0699 -3.6690 26 1 11.6472 -5.9528 -4.2849 27 6 6.5604 -3.4859 -3.6942 28 6 4.3747 -2.6616 -2.7533 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 2.2452 1.6198 -1.0277 32 1 3.0159 1.1748 0.5138 33 1 1.4744 2.0647 0.5138 34 1 2.3243 -1.6229 2.1152 35 1 3.6943 -2.1640 1.1159 36 1 3.4374 -0.4271 1.4085 37 1 0.5093 -2.4671 -0.9347 38 1 1.6107 -3.4089 0.0989 39 1 0.3796 -2.3565 0.8371 40 1 3.1555 -3.3392 0.3813 41 1 3.0678 -4.4835 -0.9836 42 1 6.1242 -5.6397 0.7140 43 1 4.5942 -5.1629 1.4884 44 1 4.5720 -6.1371 -0.0011 45 1 6.3479 -1.0718 -2.2061 46 1 6.4823 -2.0248 -0.6917 47 1 8.5274 -2.9496 -1.3152 48 1 8.6301 -1.5396 -2.4040 49 1 11.4328 -2.7287 -2.1299 50 1 6.3673 -4.5099 -4.0136 51 1 6.2958 -2.7857 -4.4865 52 1 3.8764 -3.3781 -3.4062 53 1 4.4470 -1.6953 -3.2524 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071199429.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:28 Heat of formation + Delta-G solvation = -29.044208 kcal Electronic energy + Delta-G solvation = -32140.046582 eV Core-core repulsion = 28206.280923 eV Total energy + Delta-G solvation = -3933.765658 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.24505 -40.56509 -38.02440 -37.75306 -35.99635 -34.81714 -33.18764 -32.63249 -31.09452 -29.99446 -29.47522 -27.73117 -27.36799 -26.88371 -25.68232 -24.21087 -23.10759 -22.05296 -21.41914 -20.40889 -18.97916 -18.85754 -17.94251 -17.66326 -17.17453 -16.79703 -16.48933 -16.13787 -15.95636 -15.69055 -15.49564 -15.18314 -15.06427 -14.98018 -14.19288 -14.07197 -13.98705 -13.95259 -13.67252 -13.58946 -13.25554 -13.14060 -13.11868 -12.98556 -12.97203 -12.78136 -12.73279 -12.55003 -12.37897 -12.25247 -12.08754 -12.05386 -11.92121 -11.86669 -11.69783 -11.61418 -11.32145 -10.91629 -10.71016 -10.62051 -9.92216 -9.51497 -8.93009 -7.85460 -5.21597 1.24511 1.44520 1.48926 1.54828 1.56456 1.92361 2.48468 2.61104 3.32116 3.34798 3.46156 3.57436 3.63981 3.81043 3.83446 3.90766 3.95279 4.00455 4.07209 4.15368 4.32570 4.36616 4.41172 4.45556 4.55031 4.60726 4.65143 4.70311 4.73412 4.74554 4.76713 4.81759 4.84081 4.85654 4.90610 4.93279 5.03637 5.07557 5.09681 5.16804 5.21432 5.29280 5.32713 5.35746 5.41333 5.55754 5.68287 5.72030 5.95211 6.15636 6.33549 6.39340 7.07234 7.09987 7.73808 8.39035 9.25287 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020854 B = 0.003185 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.329919 B = 8788.488601 C = 9272.682763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.115 4.115 3 C -0.114 4.114 4 C -0.042 4.042 5 C -0.155 4.155 6 C -0.156 4.156 7 C 0.522 3.478 8 O -0.572 6.572 9 N -0.608 5.608 10 C 0.063 3.937 11 C 0.057 3.943 12 H 0.051 0.949 13 C -0.137 4.137 14 O -0.370 6.370 15 C 0.112 3.888 16 C -0.148 4.148 17 C 0.199 3.801 18 N -0.621 5.621 19 C -0.242 4.242 20 H 0.085 0.915 21 C -0.068 4.068 22 N -0.954 5.954 23 Si 0.983 3.017 24 H -0.276 1.276 25 H -0.294 1.294 26 H -0.276 1.276 27 C 0.146 3.854 28 C 0.106 3.894 29 H 0.105 0.895 30 H 0.121 0.879 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.142 0.858 41 H 0.096 0.904 42 H 0.048 0.952 43 H 0.108 0.892 44 H 0.073 0.927 45 H 0.064 0.936 46 H 0.072 0.928 47 H 0.009 0.991 48 H 0.003 0.997 49 H 0.246 0.754 50 H 0.053 0.947 51 H 0.046 0.954 52 H 0.089 0.911 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.822 -0.677 11.196 26.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.115 4.115 3 C -0.171 4.171 4 C -0.045 4.045 5 C -0.212 4.212 6 C -0.212 4.212 7 C 0.312 3.688 8 O -0.451 6.451 9 N -0.340 5.340 10 C -0.058 4.058 11 C -0.001 4.001 12 H 0.069 0.931 13 C -0.194 4.194 14 O -0.289 6.289 15 C 0.070 3.930 16 C -0.186 4.186 17 C 0.074 3.926 18 N -0.347 5.347 19 C -0.371 4.371 20 H 0.103 0.897 21 C -0.260 4.260 22 N -0.603 5.603 23 Si 0.810 3.190 24 H -0.202 1.202 25 H -0.221 1.221 26 H -0.201 1.201 27 C 0.020 3.980 28 C -0.018 4.018 29 H 0.124 0.876 30 H 0.139 0.861 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.120 0.880 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.107 0.893 39 H 0.115 0.885 40 H 0.160 0.840 41 H 0.114 0.886 42 H 0.067 0.933 43 H 0.127 0.873 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.091 0.909 47 H 0.027 0.973 48 H 0.021 0.979 49 H 0.055 0.945 50 H 0.071 0.929 51 H 0.064 0.936 52 H 0.107 0.893 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -23.488 -0.358 10.761 25.838 hybrid contribution 1.581 0.318 -0.687 1.753 sum -21.907 -0.039 10.074 24.112 Atomic orbital electron populations 1.24013 0.94559 1.03351 1.00703 1.21323 0.95475 0.93899 1.00812 1.20811 0.99849 0.94920 1.01508 1.19834 0.95547 0.96367 0.92764 1.22233 0.99822 1.03125 0.96037 1.22347 0.98760 0.96331 1.03793 1.21159 0.79386 0.80927 0.87307 1.90664 1.65422 1.37022 1.51981 1.48166 1.49356 1.16229 1.20296 1.23227 0.97370 0.89428 0.95775 1.22743 0.92053 0.99850 0.85426 0.93140 1.21738 1.02953 0.95001 0.99726 1.87875 1.78810 1.33818 1.28430 1.22030 0.93179 0.86243 0.91520 1.23133 0.96655 0.98169 1.00644 1.20745 0.91327 0.91691 0.88822 1.44697 1.01258 1.54920 1.33792 1.19448 0.85385 1.22485 1.09751 0.89727 1.25696 1.00118 1.01001 0.99234 1.70198 1.20111 1.42096 1.27851 0.85096 0.78040 0.78149 0.77698 1.20167 1.22056 1.20149 1.21530 0.83757 0.99540 0.93188 1.21864 0.90298 1.02558 0.87067 0.87628 0.86144 0.92934 0.92798 0.90721 0.88038 0.90791 0.92432 0.92437 0.89267 0.88518 0.84042 0.88589 0.93299 0.87327 0.90783 0.91732 0.90924 0.97317 0.97862 0.94474 0.92866 0.93648 0.89297 0.89588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.88 13.29 67.78 0.90 -1.98 16 2 C -0.11 -2.21 4.48 -16.49 -0.07 -2.28 16 3 C -0.11 -2.46 9.02 71.23 0.64 -1.82 16 4 C -0.04 -0.75 0.60 -53.67 -0.03 -0.78 16 5 C -0.16 -2.25 8.06 71.98 0.58 -1.67 16 6 C -0.16 -1.78 6.69 71.98 0.48 -1.30 16 7 C 0.52 13.76 6.40 87.65 0.56 14.32 16 8 O -0.57 -19.81 14.04 -3.05 -0.04 -19.85 16 9 N -0.61 -15.18 2.95 -819.50 -2.42 -17.60 16 10 C 0.06 1.16 3.33 86.21 0.29 1.45 16 11 C 0.06 1.42 3.07 30.55 0.09 1.51 16 12 H 0.05 1.39 6.15 -2.39 -0.01 1.37 16 13 C -0.14 -2.56 9.57 71.98 0.69 -1.88 16 14 O -0.37 -13.13 9.92 -148.95 -1.48 -14.61 16 15 C 0.11 4.09 0.84 -10.16 -0.01 4.08 16 16 C -0.15 -6.07 5.88 31.55 0.19 -5.89 16 17 C 0.20 10.64 5.39 86.77 0.47 11.11 16 18 N -0.62 -33.77 3.40 -692.71 -2.36 -36.13 16 19 C -0.24 -14.14 10.28 84.03 0.86 -13.27 16 20 H 0.08 4.68 7.83 -2.91 -0.02 4.65 16 21 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 22 N -0.95 -59.69 10.31 21.65 0.22 -59.47 16 23 Si 0.98 47.19 29.55 68.60 2.03 49.22 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 25 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 26 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 27 C 0.15 6.29 6.42 86.56 0.56 6.84 16 28 C 0.11 3.20 5.31 86.01 0.46 3.65 16 29 H 0.11 1.44 8.04 -2.91 -0.02 1.42 16 30 H 0.12 1.38 5.68 -2.91 -0.02 1.36 16 31 H 0.05 1.41 7.32 -2.39 -0.02 1.39 16 32 H 0.05 1.19 6.42 -2.38 -0.02 1.17 16 33 H 0.07 1.27 8.06 -2.39 -0.02 1.25 16 34 H 0.10 0.89 8.03 -2.39 -0.02 0.87 16 35 H 0.07 1.06 4.93 -2.39 -0.01 1.05 16 36 H 0.06 0.99 6.31 -2.39 -0.02 0.98 16 37 H 0.06 0.77 7.81 -2.39 -0.02 0.75 16 38 H 0.09 0.77 4.70 -2.39 -0.01 0.76 16 39 H 0.10 0.68 7.14 -2.39 -0.02 0.66 16 40 H 0.14 1.72 2.82 -2.39 -0.01 1.72 16 41 H 0.10 1.47 8.03 -2.39 -0.02 1.45 16 42 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.06 2.65 7.82 -2.39 -0.02 2.63 16 46 H 0.07 2.78 6.10 -2.39 -0.01 2.77 16 47 H 0.01 0.52 7.38 -2.39 -0.02 0.50 16 48 H 0.00 0.19 7.49 -2.39 -0.02 0.17 16 49 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 50 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 51 H 0.05 1.88 7.99 -2.39 -0.02 1.86 16 52 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 53 H 0.09 2.90 6.83 -2.38 -0.02 2.89 16 Total: -1.00 -77.34 387.50 3.98 -73.37 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.90 Total: 16.52 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 7.12 Total: 8.55 kcal Atomic # 7 Polarization: -108.65 SS G_CDS: -4.55 Total: -113.19 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -1.52 Total: -34.46 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -77.34 3.98 -73.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071199429.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.325 kcal (2) G-P(sol) polarization free energy of solvation -77.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds