Wall clock time and date at job start Tue Mar 31 2020 21:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 119.99887 * 2 1 4 4 C 1.50699 * 119.99616 * 179.97438 * 2 1 3 5 5 C 1.53005 * 109.47081 * 246.95346 * 4 2 1 6 6 C 1.53002 * 109.46966 * 126.95888 * 4 2 1 7 7 C 1.50700 * 109.47560 * 6.95662 * 4 2 1 8 8 O 1.21276 * 119.99703 * 244.59295 * 7 4 2 9 9 N 1.34775 * 119.99879 * 64.58798 * 7 4 2 10 10 C 1.47158 * 121.06393 * 354.39244 * 9 7 4 11 11 C 1.53278 * 108.55136 * 231.14001 * 10 9 7 12 12 H 1.08999 * 109.51205 * 67.02748 * 11 10 9 13 13 C 1.53003 * 109.51448 * 187.12993 * 11 10 9 14 14 O 1.43100 * 109.26912 * 307.07929 * 11 10 9 15 15 C 1.42161 * 114.26939 * 61.11931 * 14 11 10 16 16 C 1.54493 * 110.36279 * 177.19470 * 15 14 11 17 17 C 1.55022 * 101.53819 * 276.09281 * 16 15 14 18 18 N 1.47479 * 104.90068 * 323.63898 * 17 16 15 19 19 C 1.36937 * 125.66474 * 204.03197 * 18 17 16 20 20 H 1.07995 * 120.00267 * 158.42627 * 19 18 17 21 21 C 1.38823 * 119.99782 * 338.42669 * 19 18 17 22 22 N 1.31619 * 119.99647 * 158.16776 * 21 19 18 23 23 Si 1.86801 * 119.99994 * 338.16815 * 21 19 18 24 24 H 1.48498 * 109.46960 * 84.81133 * 23 21 19 25 25 H 1.48490 * 109.47043 * 204.81772 * 23 21 19 26 26 H 1.48504 * 109.46717 * 324.81605 * 23 21 19 27 27 C 1.47181 * 108.67800 * 24.01051 * 18 17 16 28 28 C 1.47302 * 121.06374 * 174.41086 * 9 7 4 29 29 H 1.08005 * 120.00016 * 5.09918 * 1 2 3 30 30 H 1.07996 * 120.00186 * 185.10120 * 1 2 3 31 31 H 1.09003 * 109.46695 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47350 * 299.99543 * 3 2 1 33 33 H 1.08996 * 109.47136 * 60.00422 * 3 2 1 34 34 H 1.09002 * 109.47103 * 175.35044 * 5 4 2 35 35 H 1.08993 * 109.47345 * 295.35375 * 5 4 2 36 36 H 1.09006 * 109.46791 * 55.35062 * 5 4 2 37 37 H 1.09001 * 109.47147 * 308.73788 * 6 4 2 38 38 H 1.08996 * 109.47140 * 68.73411 * 6 4 2 39 39 H 1.09004 * 109.46793 * 188.73791 * 6 4 2 40 40 H 1.09008 * 109.62241 * 111.42181 * 10 9 7 41 41 H 1.08995 * 109.77954 * 350.95509 * 10 9 7 42 42 H 1.08991 * 109.46989 * 59.89792 * 13 11 10 43 43 H 1.09001 * 109.46950 * 179.90133 * 13 11 10 44 44 H 1.09000 * 109.46677 * 299.89939 * 13 11 10 45 45 H 1.09001 * 111.01394 * 34.15836 * 16 15 14 46 46 H 1.08999 * 111.01072 * 158.02712 * 16 15 14 47 47 H 1.08994 * 110.35769 * 204.78200 * 17 16 15 48 48 H 1.08999 * 110.35045 * 82.49504 * 17 16 15 49 49 H 0.96997 * 119.99251 * 180.02562 * 22 21 19 50 50 H 1.09004 * 109.91014 * 239.12053 * 27 18 17 51 51 H 1.08997 * 109.91287 * 117.85293 * 27 18 17 52 52 H 1.09005 * 109.67794 * 250.32880 * 28 9 7 53 53 H 1.09002 * 109.67931 * 10.82876 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 0.0006 5 6 2.8075 -1.4639 1.3281 6 6 3.0695 -1.3137 -1.1521 7 6 1.0932 -2.4454 -0.1710 8 8 0.9449 -3.2546 0.7201 9 7 0.3903 -2.5659 -1.3146 10 6 0.4593 -1.5331 -2.3606 11 6 -0.9692 -1.1291 -2.7421 12 1 -1.4411 -0.6219 -1.9006 13 6 -0.9296 -0.1890 -3.9485 14 8 -1.7188 -2.3019 -3.0746 15 6 -1.8403 -3.2385 -2.0120 16 6 -2.7212 -4.4315 -2.4450 17 6 -4.1447 -3.8786 -2.1784 18 7 -4.0118 -3.0619 -0.9576 19 6 -5.0235 -2.7581 -0.0862 20 1 -4.7934 -2.4670 0.9280 21 6 -6.3449 -2.8244 -0.5065 22 7 -7.3105 -2.9616 0.3774 23 14 -6.7526 -2.7188 -2.3264 24 1 -6.6349 -4.0664 -2.9390 25 1 -8.1403 -2.2179 -2.4945 26 1 -5.8062 -1.7880 -2.9924 27 6 -2.6112 -2.6278 -0.8311 28 6 -0.4719 -3.7353 -1.5573 29 1 -0.5400 0.9316 -0.0831 30 1 -0.5400 -0.9315 0.0832 31 1 3.1352 1.1059 -0.0005 32 1 1.8002 1.8767 -0.8900 33 1 1.8002 1.8766 0.8900 34 1 3.2848 -2.4433 1.3622 35 1 3.5666 -0.6865 1.4144 36 1 2.1010 -1.3751 2.1534 37 1 2.5622 -1.0468 -2.0792 38 1 3.8602 -0.5913 -0.9496 39 1 3.5029 -2.3092 -1.2487 40 1 0.9730 -1.9319 -3.2355 41 1 0.9979 -0.6631 -1.9850 42 1 -0.4576 -0.6968 -4.7895 43 1 -1.9459 0.0964 -4.2202 44 1 -0.3571 0.7033 -3.6951 45 1 -2.5813 -4.6573 -3.5022 46 1 -2.5210 -5.3087 -1.8299 47 1 -4.8445 -4.6976 -2.0122 48 1 -4.4741 -3.2610 -3.0138 49 1 -8.2337 -3.0082 0.0836 50 1 -2.1946 -2.9874 0.1098 51 1 -2.5543 -1.5401 -0.8734 52 1 -0.0318 -4.3609 -2.3339 53 1 -0.5767 -4.3112 -0.6378 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071199430.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:32 Heat of formation + Delta-G solvation = -37.022118 kcal Electronic energy + Delta-G solvation = -32848.568738 eV Core-core repulsion = 28914.457131 eV Total energy + Delta-G solvation = -3934.111607 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.46202 -40.66843 -38.23851 -37.82799 -35.83190 -34.88915 -33.37404 -33.07593 -31.32254 -30.28119 -28.78344 -28.47252 -27.49629 -27.30443 -25.46675 -23.69811 -23.30368 -22.62171 -21.48884 -20.29690 -19.39973 -19.02546 -18.04804 -17.81064 -17.30566 -17.20818 -16.71420 -16.14113 -16.08606 -15.67130 -15.42456 -15.17423 -15.06572 -14.78024 -14.49463 -14.33672 -14.03601 -13.96484 -13.74246 -13.55129 -13.49484 -13.35114 -13.24977 -13.13669 -13.02396 -12.96660 -12.83970 -12.75246 -12.59257 -12.39503 -12.26386 -12.21313 -12.01452 -11.93823 -11.75366 -11.58792 -11.49505 -11.01316 -10.86961 -10.69620 -9.92944 -9.56265 -9.12192 -8.26048 -5.55848 1.11004 1.25875 1.33951 1.45377 1.47123 1.79117 2.35383 2.51956 2.96273 3.12731 3.27389 3.50267 3.55693 3.62524 3.67788 3.84127 3.96244 4.01090 4.06374 4.16430 4.18267 4.26768 4.33674 4.38691 4.51586 4.57598 4.61094 4.68629 4.69359 4.72090 4.72306 4.79591 4.83398 4.85378 4.86384 4.88359 4.94863 4.96025 5.04925 5.08261 5.10797 5.14910 5.22466 5.22859 5.29556 5.35696 5.56794 5.59143 5.78304 6.01557 6.22799 6.26913 6.66322 7.02389 7.43746 8.01284 8.94231 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016063 B = 0.004052 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.679147 B = 6907.891257 C = 7110.670102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.102 4.102 3 C -0.112 4.112 4 C -0.046 4.046 5 C -0.122 4.122 6 C -0.145 4.145 7 C 0.521 3.479 8 O -0.583 6.583 9 N -0.609 5.609 10 C 0.073 3.927 11 C 0.055 3.945 12 H 0.049 0.951 13 C -0.135 4.135 14 O -0.367 6.367 15 C 0.107 3.893 16 C -0.105 4.105 17 C 0.109 3.891 18 N -0.622 5.622 19 C -0.245 4.245 20 H 0.047 0.953 21 C -0.028 4.028 22 N -0.953 5.953 23 Si 0.951 3.049 24 H -0.264 1.264 25 H -0.302 1.302 26 H -0.274 1.274 27 C 0.125 3.875 28 C 0.103 3.897 29 H 0.114 0.886 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.097 0.903 36 H 0.037 0.963 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.060 0.940 40 H 0.100 0.900 41 H 0.130 0.870 42 H 0.080 0.920 43 H 0.050 0.950 44 H 0.102 0.898 45 H 0.114 0.886 46 H 0.098 0.902 47 H 0.046 0.954 48 H 0.025 0.975 49 H 0.265 0.735 50 H 0.015 0.985 51 H 0.025 0.975 52 H 0.105 0.895 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.951 7.738 -11.044 30.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.103 4.103 3 C -0.168 4.168 4 C -0.049 4.049 5 C -0.179 4.179 6 C -0.202 4.202 7 C 0.311 3.689 8 O -0.463 6.463 9 N -0.342 5.342 10 C -0.048 4.048 11 C -0.003 4.003 12 H 0.067 0.933 13 C -0.192 4.192 14 O -0.286 6.286 15 C 0.066 3.934 16 C -0.143 4.143 17 C -0.016 4.016 18 N -0.349 5.349 19 C -0.373 4.373 20 H 0.065 0.935 21 C -0.223 4.223 22 N -0.599 5.599 23 Si 0.779 3.221 24 H -0.189 1.189 25 H -0.230 1.230 26 H -0.200 1.200 27 C -0.001 4.001 28 C -0.020 4.020 29 H 0.132 0.868 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.056 0.944 37 H 0.102 0.898 38 H 0.118 0.882 39 H 0.079 0.921 40 H 0.118 0.882 41 H 0.147 0.853 42 H 0.099 0.901 43 H 0.070 0.930 44 H 0.120 0.880 45 H 0.132 0.868 46 H 0.117 0.883 47 H 0.064 0.936 48 H 0.043 0.957 49 H 0.074 0.926 50 H 0.033 0.967 51 H 0.043 0.957 52 H 0.123 0.877 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 26.593 7.291 -10.663 29.564 hybrid contribution -1.507 -0.159 0.436 1.577 sum 25.086 7.133 -10.227 28.014 Atomic orbital electron populations 1.23936 0.96313 1.01868 1.03049 1.21632 0.94145 0.95463 0.99029 1.20894 1.00721 0.91835 1.03396 1.20002 0.94768 0.89848 1.00246 1.21643 0.99765 1.02901 0.93598 1.22164 0.98207 1.03828 0.96001 1.21208 0.80716 0.86590 0.80396 1.90683 1.67789 1.46237 1.41555 1.48222 1.44952 1.22524 1.18453 1.23109 0.97558 0.92842 0.91321 1.22849 0.90986 0.86761 0.99711 0.93266 1.21721 1.03058 0.98399 0.96054 1.87852 1.74469 1.30645 1.35671 1.22031 0.93804 0.90531 0.87028 1.22705 0.92034 0.95550 1.04021 1.22057 0.97715 0.93479 0.88317 1.44845 1.05257 1.58235 1.26578 1.18491 0.85584 1.42099 0.91153 0.93479 1.25686 0.94838 1.00022 1.01730 1.69966 1.00267 1.54091 1.35595 0.85839 0.75496 0.79108 0.81632 1.18921 1.22969 1.20002 1.21857 0.85024 0.96855 0.96331 1.22034 0.88826 0.88634 1.02553 0.86789 0.91542 0.89508 0.89395 0.91146 0.92582 0.88449 0.94404 0.89812 0.88178 0.92120 0.88243 0.85269 0.90113 0.93035 0.87985 0.86818 0.88326 0.93579 0.95724 0.92552 0.96698 0.95720 0.87726 0.90171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.11 10.01 67.78 0.68 -4.44 16 2 C -0.10 -1.78 3.26 -16.49 -0.05 -1.84 16 3 C -0.11 -1.08 9.54 71.24 0.68 -0.40 16 4 C -0.05 -0.87 0.57 -53.67 -0.03 -0.90 16 5 C -0.12 -2.33 7.64 71.98 0.55 -1.78 16 6 C -0.15 -1.62 7.70 71.98 0.55 -1.06 16 7 C 0.52 14.76 4.90 87.66 0.43 15.19 16 8 O -0.58 -22.08 15.46 -3.02 -0.05 -22.13 16 9 N -0.61 -15.69 2.31 -818.48 -1.89 -17.58 16 10 C 0.07 1.38 3.13 86.35 0.27 1.65 16 11 C 0.05 1.34 2.96 30.69 0.09 1.43 16 12 H 0.05 1.47 4.43 -2.39 -0.01 1.46 16 13 C -0.13 -2.35 9.57 71.98 0.69 -1.66 16 14 O -0.37 -11.53 9.91 -148.98 -1.48 -13.00 16 15 C 0.11 3.63 0.81 -10.22 -0.01 3.62 16 16 C -0.10 -3.49 6.21 31.79 0.20 -3.29 16 17 C 0.11 4.88 4.72 86.88 0.41 5.29 16 18 N -0.62 -32.69 3.17 -692.48 -2.20 -34.88 16 19 C -0.24 -15.24 10.56 84.04 0.89 -14.35 16 20 H 0.05 3.23 8.06 -2.91 -0.02 3.20 16 21 C -0.03 -1.71 5.44 84.86 0.46 -1.24 16 22 N -0.95 -62.50 13.97 21.65 0.30 -62.20 16 23 Si 0.95 49.15 24.31 68.60 1.67 50.82 16 24 H -0.26 -12.65 6.61 99.48 0.66 -11.99 16 25 H -0.30 -15.43 7.11 99.48 0.71 -14.72 16 26 H -0.27 -14.03 6.74 99.48 0.67 -13.36 16 27 C 0.12 5.55 6.05 86.48 0.52 6.07 16 28 C 0.10 2.98 5.22 86.07 0.45 3.43 16 29 H 0.11 2.46 8.05 -2.91 -0.02 2.44 16 30 H 0.07 2.16 5.02 -2.91 -0.01 2.14 16 31 H 0.09 0.49 6.61 -2.39 -0.02 0.48 16 32 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 1.17 8.03 -2.39 -0.02 1.15 16 35 H 0.10 1.16 7.79 -2.39 -0.02 1.14 16 36 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.08 0.74 4.94 -2.39 -0.01 0.73 16 38 H 0.10 0.58 7.12 -2.39 -0.02 0.56 16 39 H 0.06 0.75 8.12 -2.39 -0.02 0.74 16 40 H 0.10 1.42 8.07 -2.38 -0.02 1.40 16 41 H 0.13 1.89 3.11 -2.39 -0.01 1.88 16 42 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 46 H 0.10 3.03 8.01 -2.39 -0.02 3.01 16 47 H 0.05 2.17 6.98 -2.39 -0.02 2.15 16 48 H 0.03 1.16 5.51 -2.39 -0.01 1.14 16 49 H 0.27 16.36 8.31 -92.71 -0.77 15.59 16 50 H 0.01 0.73 7.61 -2.38 -0.02 0.71 16 51 H 0.02 1.15 5.70 -2.39 -0.01 1.13 16 52 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 53 H 0.08 2.74 6.81 -2.39 -0.02 2.72 16 Total: -1.00 -82.57 381.27 3.95 -78.62 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.81 Total: 14.64 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 6.78 Total: 5.71 kcal Atomic # 7 Polarization: -110.87 SS G_CDS: -3.78 Total: -114.66 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -1.52 Total: -35.13 kcal Atomic # 14 Polarization: 49.15 SS G_CDS: 1.67 Total: 50.82 kcal Total: -82.57 3.95 -78.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071199430.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.593 kcal (2) G-P(sol) polarization free energy of solvation -82.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds