Wall clock time and date at job start Tue Mar 31 2020 21:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.51501 * 2 1 4 4 C 1.52826 * 109.63240 * 240.01444 * 2 1 3 5 5 N 1.47162 * 108.79352 * 187.30057 * 4 2 1 6 6 C 1.34780 * 121.06700 * 231.08134 * 5 4 2 7 7 O 1.21286 * 119.99969 * 185.06840 * 6 5 4 8 8 C 1.50697 * 120.00271 * 5.07167 * 6 5 4 9 9 C 1.52994 * 109.47353 * 176.94682 * 8 6 5 10 10 C 1.52999 * 109.47036 * 296.94929 * 8 6 5 11 11 C 1.53003 * 109.46864 * 56.94293 * 8 6 5 12 12 C 1.53004 * 117.49931 * 240.81445 * 11 8 6 13 13 C 1.53000 * 60.00009 * 252.51563 * 12 11 8 14 14 C 1.47308 * 117.86804 * 50.80579 * 5 4 2 15 15 C 1.52512 * 108.40121 * 310.88305 * 14 5 4 16 16 C 1.54497 * 110.09429 * 173.01994 * 15 14 5 17 17 C 1.55023 * 101.53260 * 153.03050 * 16 15 14 18 18 N 1.47483 * 104.90508 * 323.63726 * 17 16 15 19 19 C 1.36940 * 125.66840 * 204.00989 * 18 17 16 20 20 H 1.07996 * 120.00062 * 180.02562 * 19 18 17 21 21 C 1.38812 * 119.99526 * 0.02562 * 19 18 17 22 22 N 1.31623 * 120.00329 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99679 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47351 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46748 * 120.00008 * 23 21 19 26 26 H 1.48502 * 109.47226 * 239.99929 * 23 21 19 27 27 C 1.47184 * 108.66918 * 24.01501 * 18 17 16 28 28 O 1.42071 * 111.11699 * 50.41782 * 15 14 5 29 29 H 1.09000 * 109.47255 * 299.89586 * 1 2 3 30 30 H 1.08999 * 109.47123 * 59.90082 * 1 2 3 31 31 H 1.09009 * 109.46967 * 179.89868 * 1 2 3 32 32 H 1.09000 * 109.54850 * 67.48137 * 4 2 1 33 33 H 1.09004 * 109.45474 * 307.06687 * 4 2 1 34 34 H 1.09007 * 109.47078 * 174.99219 * 9 8 6 35 35 H 1.09002 * 109.47149 * 294.98728 * 9 8 6 36 36 H 1.09000 * 109.47505 * 54.99238 * 9 8 6 37 37 H 1.09001 * 109.46892 * 304.57154 * 10 8 6 38 38 H 1.08999 * 109.47643 * 64.56269 * 10 8 6 39 39 H 1.08995 * 109.47771 * 184.57003 * 10 8 6 40 40 H 1.08991 * 115.55236 * 26.52895 * 11 8 6 41 41 H 1.09000 * 117.49974 * 0.02562 * 12 11 8 42 42 H 1.08996 * 117.49855 * 145.02529 * 12 11 8 43 43 H 1.08997 * 117.49857 * 252.50745 * 13 12 11 44 44 H 1.09001 * 117.49740 * 107.49457 * 13 12 11 45 45 H 1.09006 * 109.67245 * 70.60842 * 14 5 4 46 46 H 1.09000 * 109.68055 * 191.15151 * 14 5 4 47 47 H 1.08997 * 111.01275 * 271.09473 * 16 15 14 48 48 H 1.09003 * 111.00934 * 34.97150 * 16 15 14 49 49 H 1.08998 * 110.35617 * 204.78419 * 17 16 15 50 50 H 1.09006 * 110.44905 * 82.54149 * 17 16 15 51 51 H 0.96997 * 120.00073 * 180.02562 * 22 21 19 52 52 H 1.09001 * 109.90597 * 239.11356 * 27 18 17 53 53 H 1.09003 * 110.06957 * 117.94299 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0434 -0.7194 -1.2468 5 7 3.5042 -0.8639 -1.1429 6 6 4.3146 -0.4777 -2.1483 7 8 5.5070 -0.6893 -2.0815 8 6 3.7391 0.2171 -3.3554 9 6 4.8721 0.6133 -4.3042 10 6 2.7765 -0.7281 -4.0772 11 6 2.9843 1.4713 -2.9103 12 6 1.4894 1.5460 -3.2276 13 6 2.4803 2.4171 -4.0023 14 6 4.0529 -1.4384 0.0976 15 6 3.4234 -0.7142 1.2831 16 6 3.8367 -1.4000 2.6044 17 6 3.7432 -0.2218 3.6075 18 7 4.2010 0.9583 2.8506 19 6 4.7267 2.1004 3.3932 20 1 5.0333 2.9122 2.7504 21 6 4.8654 2.2146 4.7697 22 7 4.4913 1.2254 5.5532 23 14 5.5832 3.7723 5.5100 24 1 5.9218 4.7262 4.4235 25 1 4.5868 4.3924 6.4199 26 1 6.8108 3.4366 6.2751 27 6 3.9989 0.7046 1.4149 28 8 2.0080 -0.6765 1.1669 29 1 -0.3634 0.5122 0.8909 30 1 -0.3633 0.5154 -0.8891 31 1 -0.3633 -1.0278 -0.0018 32 1 1.7954 -0.1353 -2.1330 33 1 1.5819 -1.7047 -1.3133 34 1 4.4509 1.0353 -5.2167 35 1 5.5081 1.3549 -3.8208 36 1 5.4643 -0.2678 -4.5510 37 1 3.2938 -1.6557 -4.3224 38 1 1.9274 -0.9462 -3.4296 39 1 2.4227 -0.2562 -4.9937 40 1 3.3236 1.9173 -1.9755 41 1 1.0435 0.7015 -3.7530 42 1 0.8449 2.0411 -2.5013 43 1 2.4877 3.4853 -3.7856 44 1 2.6864 2.1459 -5.0377 45 1 3.8136 -2.5007 0.1472 46 1 5.1344 -1.3039 0.1175 47 1 3.1381 -2.1940 2.8678 48 1 4.8558 -1.7821 2.5442 49 1 4.3948 -0.3995 4.4630 50 1 2.7136 -0.0840 3.9382 51 1 4.5879 1.3053 6.5151 52 1 4.9515 0.7690 0.8890 53 1 3.2975 1.4296 1.0020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071202239.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:56 Heat of formation + Delta-G solvation = -26.039753 kcal Electronic energy + Delta-G solvation = -32604.288583 eV Core-core repulsion = 28670.653207 eV Total energy + Delta-G solvation = -3933.635376 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.34535 -40.65095 -38.83332 -37.95789 -35.83308 -34.87924 -33.83923 -32.98788 -31.10167 -30.00589 -28.58544 -27.74666 -27.33913 -26.06801 -24.61138 -23.31966 -22.98189 -22.24430 -21.84133 -20.40756 -19.57595 -19.03864 -18.21096 -17.99909 -17.40052 -16.91454 -16.65413 -16.33350 -16.06140 -15.62864 -15.44428 -15.10028 -15.03200 -14.97259 -14.47734 -14.17661 -13.96649 -13.75653 -13.57949 -13.47880 -13.21869 -13.14853 -13.07360 -12.93781 -12.87364 -12.80066 -12.64409 -12.37326 -12.31649 -12.16409 -12.02719 -11.98625 -11.95215 -11.81211 -11.73070 -11.60103 -11.26458 -10.97426 -10.85417 -10.81012 -10.47936 -9.55819 -8.97631 -7.83724 -5.29355 1.41523 1.43238 1.48972 1.53550 1.83032 2.43267 2.58191 2.78548 3.24826 3.31603 3.45074 3.58857 3.60916 3.75684 3.82853 3.88152 3.92165 3.99119 4.06290 4.10771 4.13816 4.28211 4.35381 4.39128 4.49867 4.51367 4.56649 4.63443 4.67633 4.71195 4.75624 4.78653 4.85849 4.88478 4.91044 4.94450 4.96034 4.99328 5.03317 5.08796 5.17193 5.24659 5.29285 5.30986 5.34062 5.36832 5.39847 5.55866 5.73272 6.22571 6.29235 6.31953 7.03749 7.05137 7.68512 8.33526 9.18350 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013892 B = 0.003850 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.069308 B = 7271.230134 C = 7636.974710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.060 3.940 3 H 0.042 0.958 4 C 0.061 3.939 5 N -0.607 5.607 6 C 0.518 3.482 7 O -0.585 6.585 8 C -0.042 4.042 9 C -0.122 4.122 10 C -0.154 4.154 11 C -0.174 4.174 12 C -0.174 4.174 13 C -0.154 4.154 14 C 0.104 3.896 15 C 0.112 3.888 16 C -0.118 4.118 17 C 0.163 3.837 18 N -0.621 5.621 19 C -0.247 4.247 20 H 0.072 0.928 21 C -0.060 4.060 22 N -0.944 5.944 23 Si 0.982 3.018 24 H -0.271 1.271 25 H -0.287 1.287 26 H -0.286 1.286 27 C 0.127 3.873 28 O -0.371 6.371 29 H 0.051 0.949 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.145 0.855 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.038 0.962 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.131 0.869 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.117 0.883 45 H 0.095 0.905 46 H 0.077 0.923 47 H 0.097 0.903 48 H 0.083 0.917 49 H 0.077 0.923 50 H -0.011 1.011 51 H 0.250 0.750 52 H 0.009 0.991 53 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.156 -4.813 -23.212 26.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.002 3.998 3 H 0.060 0.940 4 C -0.060 4.060 5 N -0.339 5.339 6 C 0.308 3.692 7 O -0.465 6.465 8 C -0.045 4.045 9 C -0.180 4.180 10 C -0.210 4.210 11 C -0.193 4.193 12 C -0.210 4.210 13 C -0.191 4.191 14 C -0.020 4.020 15 C 0.071 3.929 16 C -0.157 4.157 17 C 0.038 3.962 18 N -0.347 5.347 19 C -0.376 4.376 20 H 0.090 0.910 21 C -0.253 4.253 22 N -0.593 5.593 23 Si 0.810 3.190 24 H -0.196 1.196 25 H -0.213 1.213 26 H -0.213 1.213 27 C 0.002 3.998 28 O -0.290 6.290 29 H 0.070 0.930 30 H 0.125 0.875 31 H 0.097 0.903 32 H 0.162 0.838 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.118 0.882 40 H 0.091 0.909 41 H 0.149 0.851 42 H 0.121 0.879 43 H 0.113 0.887 44 H 0.135 0.865 45 H 0.113 0.887 46 H 0.095 0.905 47 H 0.115 0.885 48 H 0.102 0.898 49 H 0.095 0.905 50 H 0.007 0.993 51 H 0.060 0.940 52 H 0.027 0.973 53 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -10.604 -4.917 -22.867 25.681 hybrid contribution 1.115 1.153 1.214 2.012 sum -9.489 -3.763 -21.653 23.938 Atomic orbital electron populations 1.21746 0.89714 1.04134 1.03686 1.22672 0.97277 0.95031 0.84775 0.94000 1.23272 0.78327 1.03419 1.00962 1.48206 1.08110 1.61925 1.15675 1.21363 0.85810 0.77386 0.84650 1.90662 1.17501 1.57671 1.80671 1.20270 0.97612 0.94584 0.92017 1.21647 0.96456 1.01228 0.98627 1.22325 0.98477 0.98387 1.01830 1.22084 0.98104 0.98363 1.00747 1.23468 0.90221 1.03708 1.03639 1.23097 1.01911 0.97001 0.97107 1.21997 0.99144 0.98143 0.82673 1.21963 0.81752 0.93830 0.95376 1.22862 1.01625 0.98370 0.92859 1.21683 0.96115 0.83912 0.94480 1.44785 1.73017 1.16012 1.00856 1.19406 1.33809 0.93361 0.91002 0.91034 1.25629 1.02028 1.01545 0.96074 1.70044 1.53835 1.32340 1.03123 0.84969 0.77451 0.78538 0.78083 1.19572 1.21343 1.21293 1.21743 0.96113 0.95709 0.86281 1.87844 1.19244 1.77178 1.44725 0.92998 0.87504 0.90348 0.83794 0.88782 0.88755 0.94277 0.92926 0.92213 0.89635 0.88204 0.90946 0.85091 0.87916 0.88714 0.86497 0.88668 0.90473 0.88506 0.89813 0.90490 0.99336 0.94022 0.97285 0.96482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.57 71.98 0.69 -1.82 16 2 C 0.06 1.59 3.15 30.53 0.10 1.68 16 3 H 0.04 1.31 6.22 -2.39 -0.01 1.29 16 4 C 0.06 1.26 4.02 86.20 0.35 1.61 16 5 N -0.61 -17.10 2.94 -819.31 -2.41 -19.50 16 6 C 0.52 15.48 6.43 87.66 0.56 16.04 16 7 O -0.59 -22.72 15.41 -3.05 -0.05 -22.77 16 8 C -0.04 -0.83 0.61 -52.93 -0.03 -0.87 16 9 C -0.12 -2.46 7.50 71.98 0.54 -1.92 16 10 C -0.15 -1.87 6.77 71.98 0.49 -1.39 16 11 C -0.17 -3.21 3.95 -10.79 -0.04 -3.25 16 12 C -0.17 -1.89 7.70 30.60 0.24 -1.66 16 13 C -0.15 -1.89 9.55 30.60 0.29 -1.60 16 14 C 0.10 3.41 5.18 86.06 0.45 3.86 16 15 C 0.11 4.25 0.81 -10.22 -0.01 4.25 16 16 C -0.12 -4.77 6.21 31.80 0.20 -4.57 16 17 C 0.16 8.58 5.89 86.88 0.51 9.09 16 18 N -0.62 -34.73 3.40 -692.47 -2.36 -37.08 16 19 C -0.25 -14.83 10.28 84.03 0.86 -13.97 16 20 H 0.07 4.21 7.83 -2.91 -0.02 4.19 16 21 C -0.06 -3.53 5.49 84.86 0.47 -3.07 16 22 N -0.94 -57.88 10.09 21.65 0.22 -57.66 16 23 Si 0.98 47.36 29.55 68.60 2.03 49.39 16 24 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 26 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 27 C 0.13 5.99 6.33 86.47 0.55 6.54 16 28 O -0.37 -13.06 9.90 -148.98 -1.48 -14.53 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.14 2.16 1.34 -2.39 0.00 2.16 16 33 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.09 1.23 7.05 -2.38 -0.02 1.21 16 35 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.05 1.17 7.91 -2.39 -0.02 1.15 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.09 0.84 4.28 -2.39 -0.01 0.83 16 39 H 0.10 0.67 7.65 -2.39 -0.02 0.65 16 40 H 0.07 1.90 8.05 -2.39 -0.02 1.88 16 41 H 0.13 0.76 5.72 -2.39 -0.01 0.75 16 42 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.12 0.99 7.19 -2.39 -0.02 0.97 16 45 H 0.10 2.68 8.14 -2.38 -0.02 2.67 16 46 H 0.08 2.92 6.88 -2.39 -0.02 2.91 16 47 H 0.10 3.39 8.14 -2.39 -0.02 3.38 16 48 H 0.08 3.22 8.01 -2.39 -0.02 3.20 16 49 H 0.08 4.52 5.88 -2.39 -0.01 4.50 16 50 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 51 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 52 H 0.01 0.46 7.61 -2.39 -0.02 0.44 16 53 H 0.02 0.83 6.00 -2.39 -0.01 0.81 16 Total: -1.00 -78.49 387.55 3.06 -75.43 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.90 Total: 17.76 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 6.20 Total: 8.97 kcal Atomic # 7 Polarization: -109.70 SS G_CDS: -4.54 Total: -114.25 kcal Atomic # 8 Polarization: -35.77 SS G_CDS: -1.52 Total: -37.30 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Total: -78.49 3.06 -75.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071202239.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.392 kcal (2) G-P(sol) polarization free energy of solvation -78.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds