Wall clock time and date at job start Tue Mar 31 2020 21:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.50758 * 2 1 4 4 C 1.53272 * 109.51393 * 120.09990 * 2 1 3 5 5 N 1.47162 * 108.56848 * 172.91189 * 4 2 1 6 6 C 1.34772 * 121.07911 * 128.76445 * 5 4 2 7 7 O 1.21279 * 120.00486 * 174.87367 * 6 5 4 8 8 C 1.50702 * 120.00073 * 354.87145 * 6 5 4 9 9 C 1.53002 * 109.46979 * 300.97940 * 8 6 5 10 10 C 1.52998 * 109.47035 * 60.97613 * 8 6 5 11 11 C 1.52993 * 109.47518 * 180.97812 * 8 6 5 12 12 C 1.53001 * 117.49912 * 248.62288 * 11 8 6 13 13 C 1.52996 * 60.00081 * 252.50812 * 12 11 8 14 14 C 1.47331 * 117.84481 * 308.77937 * 5 4 2 15 15 C 1.52375 * 108.40515 * 49.18711 * 14 5 4 16 16 C 1.54344 * 110.42127 * 186.36807 * 15 14 5 17 17 C 1.54466 * 102.86983 * 207.61488 * 16 15 14 18 18 N 1.47081 * 107.29747 * 21.48698 * 17 16 15 19 19 C 1.36941 * 125.62945 * 180.99128 * 18 17 16 20 20 H 1.07999 * 119.99503 * 180.02562 * 19 18 17 21 21 C 1.38810 * 120.00082 * 0.02562 * 19 18 17 22 22 N 1.31618 * 120.00027 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 119.99993 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47043 * 60.00481 * 23 21 19 25 25 H 1.48501 * 109.47023 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47550 * 300.00105 * 23 21 19 27 27 C 1.47571 * 108.74005 * 1.00296 * 18 17 16 28 28 O 1.41886 * 111.44044 * 309.91461 * 15 14 5 29 29 H 1.09001 * 109.46875 * 299.89397 * 1 2 3 30 30 H 1.09004 * 109.46905 * 179.90341 * 1 2 3 31 31 H 1.08995 * 109.47201 * 59.89970 * 1 2 3 32 32 H 1.09001 * 109.62008 * 292.63842 * 4 2 1 33 33 H 1.09002 * 109.62284 * 52.99894 * 4 2 1 34 34 H 1.08999 * 109.47430 * 47.34706 * 9 8 6 35 35 H 1.09006 * 109.47005 * 167.34653 * 9 8 6 36 36 H 1.08999 * 109.47010 * 287.34941 * 9 8 6 37 37 H 1.08999 * 109.47180 * 68.21981 * 10 8 6 38 38 H 1.09001 * 109.47436 * 188.22344 * 10 8 6 39 39 H 1.09001 * 109.47200 * 308.22701 * 10 8 6 40 40 H 1.09003 * 115.55411 * 34.32773 * 11 8 6 41 41 H 1.09003 * 117.50178 * 359.97438 * 12 11 8 42 42 H 1.09008 * 117.50053 * 145.01384 * 12 11 8 43 43 H 1.09002 * 117.49621 * 252.50951 * 13 12 11 44 44 H 1.08994 * 117.49947 * 107.48968 * 13 12 11 45 45 H 1.09004 * 109.67912 * 168.90713 * 14 5 4 46 46 H 1.08998 * 109.68399 * 289.45471 * 14 5 4 47 47 H 1.09000 * 110.73867 * 325.95683 * 16 15 14 48 48 H 1.08997 * 110.73695 * 89.27016 * 16 15 14 49 49 H 1.09002 * 109.88036 * 262.05624 * 17 16 15 50 50 H 1.09001 * 110.00314 * 140.98331 * 17 16 15 51 51 H 0.97003 * 120.00383 * 180.02562 * 22 21 19 52 52 H 1.08993 * 110.38122 * 217.85062 * 27 18 17 53 53 H 1.09002 * 110.46569 * 95.54913 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0420 -0.7245 1.2499 5 7 3.5034 -0.8631 1.1456 6 6 4.3125 -0.4748 2.1510 7 8 5.5055 -0.6825 2.0841 8 6 3.7349 0.2176 3.3585 9 6 3.0203 1.4972 2.9194 10 6 2.7364 -0.7123 4.0506 11 6 4.8616 0.5710 4.3314 12 6 4.9083 -0.1828 5.6621 13 6 4.4767 1.2846 5.6289 14 6 4.0533 -1.4397 -0.0937 15 6 3.4216 -0.7217 -1.2800 16 6 3.8436 -1.3944 -2.6035 17 6 3.7652 -0.2336 -3.6196 18 7 3.8527 1.0213 -2.8576 19 6 3.8012 2.2824 -3.3889 20 1 3.8749 3.1442 -2.7421 21 6 3.6542 2.4531 -4.7586 22 7 3.5638 1.4028 -5.5467 23 14 3.5847 4.1733 -5.4833 24 1 4.8424 4.8958 -5.1647 25 1 3.4246 4.0835 -6.9569 26 1 2.4314 4.9082 -4.9044 27 6 4.0054 0.6971 -1.4261 28 8 2.0080 -0.6775 -1.1666 29 1 -0.3633 0.5122 0.8910 30 1 -0.3633 -1.0277 -0.0017 31 1 -0.3633 0.5154 -0.8890 32 1 1.7918 -0.1439 2.1378 33 1 1.5819 -1.7105 1.3157 34 1 2.3757 1.2794 2.0678 35 1 2.4170 1.8776 3.7438 36 1 3.7589 2.2462 2.6338 37 1 3.2696 -1.5548 4.4912 38 1 2.2121 -0.1645 4.8337 39 1 2.0161 -1.0804 3.3200 40 1 5.8125 0.8406 3.8718 41 1 4.1361 -0.9302 5.8445 42 1 5.8901 -0.4095 6.0779 43 1 5.1746 2.0234 6.0230 44 1 3.4209 1.5024 5.7894 45 1 5.1344 -1.3017 -0.1145 46 1 3.8175 -2.5028 -0.1401 47 1 4.8614 -1.7782 -2.5340 48 1 3.1477 -2.1894 -2.8714 49 1 2.8182 -0.2754 -4.1577 50 1 4.5946 -0.2981 -4.3240 51 1 3.4615 1.5220 -6.5039 52 1 3.4437 1.4034 -0.8149 53 1 5.0581 0.7053 -1.1436 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071202241.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:04 Heat of formation + Delta-G solvation = -21.041977 kcal Electronic energy + Delta-G solvation = -32257.671686 eV Core-core repulsion = 28324.253031 eV Total energy + Delta-G solvation = -3933.418656 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.27362 -40.63228 -38.55051 -38.00141 -36.09408 -34.97662 -33.86864 -32.85341 -31.12374 -29.83730 -28.45640 -27.79277 -27.41064 -25.75342 -24.97531 -23.19897 -23.06210 -22.14316 -21.79937 -20.42390 -19.58513 -18.99932 -18.04420 -17.74477 -17.63112 -16.81094 -16.56742 -16.17769 -16.02811 -15.74189 -15.58279 -15.28579 -15.07495 -14.95621 -14.47964 -14.04613 -13.96124 -13.78459 -13.56237 -13.54478 -13.42523 -13.12437 -12.98779 -12.96659 -12.80326 -12.68713 -12.56674 -12.36789 -12.22853 -12.11045 -12.05249 -12.00829 -11.90239 -11.78567 -11.68622 -11.36539 -11.25107 -10.97849 -10.82208 -10.71797 -10.50572 -9.53925 -8.93766 -7.87747 -5.23973 1.41991 1.46032 1.52450 1.54150 1.80875 2.45948 2.61819 2.91292 3.29502 3.34840 3.47341 3.56428 3.61977 3.71300 3.87356 3.91868 3.98057 4.05162 4.06737 4.12825 4.13350 4.29942 4.36010 4.39002 4.48770 4.51592 4.57534 4.60124 4.66451 4.68006 4.76946 4.78576 4.85542 4.89095 4.91865 4.93470 4.96102 5.02177 5.04534 5.10095 5.22663 5.23472 5.31440 5.33250 5.34570 5.37242 5.40938 5.60540 5.72380 6.14812 6.31569 6.36846 7.06060 7.07876 7.71687 8.37075 9.22458 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015285 B = 0.003516 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.390335 B = 7960.615723 C = 8348.732485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.059 3.941 3 H 0.045 0.955 4 C 0.064 3.936 5 N -0.610 5.610 6 C 0.521 3.479 7 O -0.581 6.581 8 C -0.040 4.040 9 C -0.153 4.153 10 C -0.161 4.161 11 C -0.156 4.156 12 C -0.180 4.180 13 C -0.156 4.156 14 C 0.105 3.895 15 C 0.110 3.890 16 C -0.119 4.119 17 C 0.192 3.808 18 N -0.619 5.619 19 C -0.249 4.249 20 H 0.075 0.925 21 C -0.061 4.061 22 N -0.948 5.948 23 Si 0.980 3.020 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.275 1.275 27 C 0.122 3.878 28 O -0.367 6.367 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.143 0.857 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.044 0.956 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.116 0.884 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.117 0.883 45 H 0.082 0.918 46 H 0.095 0.905 47 H 0.091 0.909 48 H 0.093 0.907 49 H 0.013 0.987 50 H 0.009 0.991 51 H 0.248 0.752 52 H 0.036 0.964 53 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.405 -5.901 24.075 25.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.001 3.999 3 H 0.063 0.937 4 C -0.058 4.058 5 N -0.343 5.343 6 C 0.311 3.689 7 O -0.461 6.461 8 C -0.044 4.044 9 C -0.210 4.210 10 C -0.217 4.217 11 C -0.174 4.174 12 C -0.216 4.216 13 C -0.192 4.192 14 C -0.018 4.018 15 C 0.068 3.932 16 C -0.158 4.158 17 C 0.067 3.933 18 N -0.345 5.345 19 C -0.377 4.377 20 H 0.093 0.907 21 C -0.255 4.255 22 N -0.596 5.596 23 Si 0.807 3.193 24 H -0.204 1.204 25 H -0.216 1.216 26 H -0.201 1.201 27 C -0.003 4.003 28 O -0.287 6.287 29 H 0.125 0.875 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.160 0.840 33 H 0.118 0.882 34 H 0.088 0.912 35 H 0.121 0.879 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.117 0.883 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.134 0.866 42 H 0.105 0.895 43 H 0.114 0.886 44 H 0.135 0.865 45 H 0.100 0.900 46 H 0.113 0.887 47 H 0.109 0.891 48 H 0.111 0.889 49 H 0.031 0.969 50 H 0.027 0.973 51 H 0.058 0.942 52 H 0.054 0.946 53 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -6.919 -5.997 23.709 25.415 hybrid contribution 0.899 1.131 -1.250 1.911 sum -6.020 -4.865 22.459 23.755 Atomic orbital electron populations 1.21731 0.90050 1.04000 1.03535 1.22793 0.97158 0.95081 0.84882 0.93730 1.23302 0.78577 1.03655 1.00238 1.48202 1.07885 1.62251 1.15914 1.21260 0.85891 0.77370 0.84410 1.90648 1.17470 1.57408 1.80550 1.20194 0.96220 0.96723 0.91215 1.22216 1.00503 0.94988 1.03329 1.22464 0.98043 0.99189 1.02048 1.21935 0.98456 1.07588 0.89470 1.23250 1.03483 0.96041 0.98864 1.23054 1.03275 0.94879 0.98029 1.21935 0.99327 0.98107 0.82447 1.22029 0.81953 0.94324 0.94899 1.22727 1.02005 0.98212 0.92815 1.20877 0.97761 0.83236 0.91426 1.44695 1.85849 1.02349 1.01615 1.19342 1.43263 0.83748 0.91390 0.90681 1.25650 1.02122 1.01389 0.96293 1.70180 1.57094 1.29117 1.03250 0.85142 0.78203 0.78995 0.76913 1.20450 1.21616 1.20084 1.21997 0.96417 0.95707 0.86215 1.87822 1.19321 1.76958 1.44569 0.87494 0.90409 0.93401 0.84025 0.88230 0.91170 0.87894 0.93641 0.91515 0.88325 0.89718 0.90372 0.86561 0.89459 0.88608 0.86514 0.89967 0.88723 0.89072 0.88857 0.96854 0.97257 0.94246 0.94560 0.97163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.57 71.98 0.69 -1.97 16 2 C 0.06 1.55 2.95 30.69 0.09 1.64 16 3 H 0.04 1.38 5.65 -2.39 -0.01 1.37 16 4 C 0.06 1.23 3.35 86.34 0.29 1.52 16 5 N -0.61 -16.18 2.94 -818.67 -2.41 -18.58 16 6 C 0.52 14.79 6.50 87.66 0.57 15.36 16 7 O -0.58 -21.66 15.17 -3.03 -0.05 -21.71 16 8 C -0.04 -0.78 0.60 -52.93 -0.03 -0.81 16 9 C -0.15 -2.64 7.77 71.98 0.56 -2.08 16 10 C -0.16 -1.90 6.81 71.98 0.49 -1.41 16 11 C -0.16 -3.21 4.71 -10.80 -0.05 -3.26 16 12 C -0.18 -2.81 9.58 30.59 0.29 -2.52 16 13 C -0.16 -2.12 9.57 30.59 0.29 -1.83 16 14 C 0.11 3.25 5.28 86.01 0.45 3.70 16 15 C 0.11 4.03 0.83 -10.17 -0.01 4.02 16 16 C -0.12 -4.64 6.12 31.55 0.19 -4.45 16 17 C 0.19 10.07 5.39 86.77 0.47 10.53 16 18 N -0.62 -34.06 3.40 -692.75 -2.36 -36.42 16 19 C -0.25 -14.74 10.28 84.03 0.86 -13.87 16 20 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 21 C -0.06 -3.62 5.49 84.86 0.47 -3.15 16 22 N -0.95 -58.83 10.31 21.65 0.22 -58.60 16 23 Si 0.98 47.16 29.55 68.60 2.03 49.19 16 24 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 25 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 26 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 27 C 0.12 5.55 6.18 86.55 0.54 6.08 16 28 O -0.37 -13.05 9.92 -148.95 -1.48 -14.53 16 29 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.14 1.91 2.93 -2.39 -0.01 1.90 16 33 H 0.10 1.56 8.11 -2.39 -0.02 1.54 16 34 H 0.07 1.24 4.19 -2.39 -0.01 1.23 16 35 H 0.10 1.08 7.64 -2.38 -0.02 1.06 16 36 H 0.04 0.98 8.08 -2.39 -0.02 0.96 16 37 H 0.07 0.86 6.37 -2.39 -0.02 0.84 16 38 H 0.10 0.65 7.48 -2.39 -0.02 0.63 16 39 H 0.08 0.84 4.63 -2.39 -0.01 0.83 16 40 H 0.08 2.18 7.49 -2.39 -0.02 2.16 16 41 H 0.12 1.43 5.74 -2.39 -0.01 1.41 16 42 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 43 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.12 1.07 7.39 -2.39 -0.02 1.05 16 45 H 0.08 2.86 6.90 -2.39 -0.02 2.85 16 46 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 47 H 0.09 3.19 8.00 -2.39 -0.02 3.17 16 48 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 49 H 0.01 0.78 7.38 -2.39 -0.02 0.76 16 50 H 0.01 0.54 7.49 -2.39 -0.02 0.52 16 51 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 52 H 0.04 1.64 6.09 -2.39 -0.01 1.62 16 53 H 0.01 0.51 7.82 -2.39 -0.02 0.49 16 Total: -1.00 -78.70 386.10 3.03 -75.67 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.91 Total: 17.47 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 6.16 Total: 7.51 kcal Atomic # 7 Polarization: -109.06 SS G_CDS: -4.54 Total: -113.60 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -1.52 Total: -36.24 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -78.70 3.03 -75.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071202241.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.629 kcal (2) G-P(sol) polarization free energy of solvation -78.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds