Wall clock time and date at job start Tue Mar 31 2020 21:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.51450 * 2 1 4 4 C 1.53280 * 109.51388 * 120.10296 * 2 1 3 5 5 N 1.47163 * 108.54985 * 172.82733 * 4 2 1 6 6 C 1.34770 * 121.06866 * 128.88952 * 5 4 2 7 7 O 1.21280 * 120.00503 * 174.85616 * 6 5 4 8 8 C 1.50707 * 119.99786 * 354.85567 * 6 5 4 9 9 C 1.53001 * 109.47156 * 300.94168 * 8 6 5 10 10 C 1.53009 * 109.46628 * 60.93956 * 8 6 5 11 11 C 1.52998 * 109.47320 * 180.93775 * 8 6 5 12 12 C 1.52996 * 117.49822 * 248.75168 * 11 8 6 13 13 C 1.52995 * 117.49892 * 180.09074 * 11 8 6 14 14 C 1.47305 * 117.86950 * 308.86713 * 5 4 2 15 15 C 1.52519 * 108.40522 * 49.38433 * 14 5 4 16 16 C 1.54809 * 110.21488 * 72.18077 * 15 14 5 17 17 C 1.55023 * 101.63229 * 152.89950 * 16 15 14 18 18 N 1.47488 * 104.89336 * 323.72996 * 17 16 15 19 19 C 1.36937 * 125.65789 * 204.00567 * 18 17 16 20 20 H 1.08008 * 119.99812 * 180.02562 * 19 18 17 21 21 C 1.38816 * 120.00260 * 359.97438 * 19 18 17 22 22 N 1.31612 * 119.99780 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99733 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47346 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46888 * 120.00401 * 23 21 19 26 26 H 1.48500 * 109.46972 * 240.00103 * 23 21 19 27 27 C 1.47182 * 108.67508 * 24.00726 * 18 17 16 28 28 O 1.42070 * 111.11635 * 309.59199 * 15 14 5 29 29 H 1.09003 * 109.46906 * 299.89944 * 1 2 3 30 30 H 1.09005 * 109.47404 * 59.89822 * 1 2 3 31 31 H 1.08999 * 109.47446 * 179.89719 * 1 2 3 32 32 H 1.09003 * 109.62375 * 53.10712 * 4 2 1 33 33 H 1.09000 * 109.62076 * 292.54515 * 4 2 1 34 34 H 1.08997 * 109.46964 * 46.93755 * 9 8 6 35 35 H 1.08997 * 109.47013 * 166.94129 * 9 8 6 36 36 H 1.08995 * 109.46644 * 286.93617 * 9 8 6 37 37 H 1.08991 * 109.47202 * 68.10592 * 10 8 6 38 38 H 1.08999 * 109.46469 * 188.10651 * 10 8 6 39 39 H 1.08998 * 109.46972 * 308.09701 * 10 8 6 40 40 H 1.09000 * 115.54798 * 34.41741 * 11 8 6 41 41 H 1.09002 * 117.50174 * 359.97438 * 12 11 8 42 42 H 1.09004 * 117.50030 * 145.01953 * 12 11 8 43 43 H 1.09008 * 117.49818 * 214.97811 * 13 11 8 44 44 H 1.08997 * 117.50073 * 0.02562 * 13 11 8 45 45 H 1.09002 * 109.68224 * 289.65864 * 14 5 4 46 46 H 1.09003 * 109.71299 * 169.13088 * 14 5 4 47 47 H 1.09002 * 110.87848 * 34.84196 * 16 15 14 48 48 H 1.09005 * 111.06017 * 271.03701 * 16 15 14 49 49 H 1.08991 * 110.35738 * 204.87580 * 17 16 15 50 50 H 1.08997 * 110.44528 * 82.62419 * 17 16 15 51 51 H 0.97001 * 119.99649 * 179.97438 * 22 21 19 52 52 H 1.09002 * 109.91102 * 117.87306 * 27 18 17 53 53 H 1.09003 * 109.90989 * 238.94857 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0419 -0.7246 1.2499 5 7 3.5031 -0.8647 1.1443 6 6 4.3132 -0.4792 2.1499 7 8 5.5059 -0.6884 2.0820 8 6 3.7371 0.2121 3.3588 9 6 3.0247 1.4938 2.9222 10 6 2.7370 -0.7174 4.0493 11 6 4.8646 0.5615 4.3322 12 6 4.9119 -0.1969 5.6600 13 6 4.4811 1.2716 5.6319 14 6 4.0517 -1.4404 -0.0957 15 6 3.4233 -0.7165 -1.2819 16 6 3.9928 0.7185 -1.3957 17 6 3.8370 0.9973 -2.9127 18 7 4.1130 -0.2959 -3.5661 19 6 4.5452 -0.4630 -4.8547 20 1 4.7189 -1.4564 -5.2414 21 6 4.7591 0.6442 -5.6642 22 7 4.5470 1.8547 -5.1930 23 14 5.3494 0.4161 -7.4217 24 1 5.5115 -1.0324 -7.7054 25 1 4.3524 0.9949 -8.3577 26 1 6.6531 1.1047 -7.5993 27 6 3.8467 -1.3767 -2.6032 28 8 2.0079 -0.6775 -1.1663 29 1 -0.3633 0.5123 0.8909 30 1 -0.3634 0.5154 -0.8891 31 1 -0.3634 -1.0276 -0.0018 32 1 1.5833 -1.7113 1.3147 33 1 1.7931 -0.1433 2.1377 34 1 2.3852 1.2803 2.0658 35 1 2.4167 1.8698 3.7450 36 1 3.7648 2.2443 2.6449 37 1 3.2685 -1.5626 4.4865 38 1 2.2154 -0.1706 4.8348 39 1 2.0145 -1.0810 3.3186 40 1 5.8154 0.8316 3.8727 41 1 4.1395 -0.9446 5.8404 42 1 5.8939 -0.4255 6.0744 43 1 5.1798 2.0087 6.0279 44 1 3.4255 1.4895 5.7938 45 1 3.8118 -2.5026 -0.1449 46 1 5.1334 -1.3073 -0.1156 47 1 5.0414 0.7449 -1.0992 48 1 3.4039 1.4215 -0.8065 49 1 4.5585 1.7473 -3.2365 50 1 2.8224 1.3264 -3.1370 51 1 4.6969 2.6284 -5.7585 52 1 3.0438 -2.0143 -2.9735 53 1 4.7494 -1.9682 -2.4501 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071202242.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:08 Heat of formation + Delta-G solvation = -19.516702 kcal Electronic energy + Delta-G solvation = -32042.737268 eV Core-core repulsion = 28109.384753 eV Total energy + Delta-G solvation = -3933.352515 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.29007 -40.64161 -38.54965 -38.04231 -36.12788 -34.92038 -33.85453 -32.83962 -31.07277 -30.01314 -28.46835 -27.72989 -27.38392 -25.73821 -24.96589 -23.24301 -23.06510 -22.04676 -21.86711 -20.49141 -19.57292 -19.02712 -18.02684 -17.75487 -17.63742 -16.89669 -16.58595 -16.15665 -15.98913 -15.83283 -15.57261 -15.26983 -14.92495 -14.85448 -14.50921 -14.15529 -13.99038 -13.79702 -13.59490 -13.56451 -13.42786 -13.08384 -12.97227 -12.95630 -12.82180 -12.75663 -12.56884 -12.38628 -12.24919 -12.24217 -11.98276 -11.93805 -11.89804 -11.81014 -11.49809 -11.37741 -11.24763 -10.98293 -10.82695 -10.78133 -10.52028 -9.55416 -8.95174 -7.80594 -5.25806 1.45110 1.46806 1.54043 1.57378 1.78577 2.44491 2.60093 2.91386 3.29470 3.34410 3.47196 3.55051 3.58499 3.76082 3.80605 3.92031 3.96540 4.03305 4.06611 4.13586 4.14894 4.29809 4.33685 4.38413 4.46844 4.48936 4.55996 4.60867 4.70183 4.71849 4.75898 4.79231 4.84596 4.87776 4.90964 4.94255 4.95876 5.03873 5.05453 5.10590 5.22244 5.23801 5.31395 5.33180 5.35997 5.40661 5.42278 5.52792 5.71436 6.23370 6.31021 6.33862 7.05833 7.07832 7.71681 8.36571 9.22238 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019122 B = 0.003146 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.904004 B = 8898.736277 C = 9452.455231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.056 3.944 3 H 0.057 0.943 4 C 0.061 3.939 5 N -0.608 5.608 6 C 0.521 3.479 7 O -0.583 6.583 8 C -0.041 4.041 9 C -0.153 4.153 10 C -0.162 4.162 11 C -0.155 4.155 12 C -0.183 4.183 13 C -0.154 4.154 14 C 0.107 3.893 15 C 0.115 3.885 16 C -0.147 4.147 17 C 0.168 3.832 18 N -0.623 5.623 19 C -0.239 4.239 20 H 0.084 0.916 21 C -0.068 4.068 22 N -0.950 5.950 23 Si 0.985 3.015 24 H -0.265 1.265 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.147 3.853 28 O -0.373 6.373 29 H 0.109 0.891 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.146 0.854 34 H 0.072 0.928 35 H 0.103 0.897 36 H 0.048 0.952 37 H 0.063 0.937 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.115 0.885 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.118 0.882 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.056 0.944 48 H 0.078 0.922 49 H 0.071 0.929 50 H -0.014 1.014 51 H 0.247 0.753 52 H 0.034 0.966 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.017 -3.018 24.957 27.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.002 4.002 3 H 0.075 0.925 4 C -0.060 4.060 5 N -0.340 5.340 6 C 0.311 3.689 7 O -0.462 6.462 8 C -0.044 4.044 9 C -0.210 4.210 10 C -0.218 4.218 11 C -0.174 4.174 12 C -0.220 4.220 13 C -0.190 4.190 14 C -0.017 4.017 15 C 0.074 3.926 16 C -0.185 4.185 17 C 0.043 3.957 18 N -0.350 5.350 19 C -0.368 4.368 20 H 0.102 0.898 21 C -0.261 4.261 22 N -0.600 5.600 23 Si 0.813 3.187 24 H -0.189 1.189 25 H -0.218 1.218 26 H -0.217 1.217 27 C 0.021 3.979 28 O -0.293 6.293 29 H 0.128 0.872 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.163 0.837 34 H 0.091 0.909 35 H 0.121 0.879 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.118 0.882 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.134 0.866 42 H 0.104 0.896 43 H 0.114 0.886 44 H 0.136 0.864 45 H 0.104 0.896 46 H 0.098 0.902 47 H 0.074 0.926 48 H 0.097 0.903 49 H 0.089 0.911 50 H 0.004 0.996 51 H 0.057 0.943 52 H 0.052 0.948 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.460 -3.129 24.618 26.558 hybrid contribution 1.087 0.226 -1.527 1.888 sum -8.373 -2.903 23.091 24.733 Atomic orbital electron populations 1.21757 0.89890 1.03945 1.03877 1.22883 0.97228 0.95474 0.84593 0.92486 1.23349 0.78439 1.03631 1.00573 1.48164 1.07943 1.62297 1.15596 1.21306 0.85849 0.77380 0.84396 1.90659 1.17654 1.57334 1.80546 1.20216 0.96200 0.96930 0.91045 1.22221 1.00600 0.94738 1.03461 1.22472 0.98041 0.99192 1.02110 1.21937 0.98482 1.07486 0.89457 1.23261 1.03431 0.96126 0.99158 1.23070 1.03333 0.94746 0.97899 1.21866 0.99193 0.97795 0.82819 1.21936 0.81777 0.94850 0.94023 1.23313 0.99982 0.97076 0.98168 1.21566 0.97072 0.89218 0.87815 1.44796 1.78190 1.01974 1.09998 1.19524 1.36434 0.93504 0.87330 0.89814 1.25691 1.02546 0.94982 1.02840 1.70069 1.56221 0.97617 1.36088 0.84913 0.77016 0.77857 0.78947 1.18935 1.21783 1.21748 1.21206 0.97581 0.91287 0.87792 1.87882 1.19331 1.77325 1.44729 0.87234 0.92857 0.90883 0.88681 0.83689 0.90892 0.87859 0.93274 0.91773 0.88203 0.89698 0.90371 0.86647 0.89598 0.88571 0.86389 0.89612 0.90235 0.92562 0.90312 0.91135 0.99570 0.94300 0.94787 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.57 71.98 0.69 -1.61 16 2 C 0.06 1.31 2.94 30.69 0.09 1.40 16 3 H 0.06 1.45 5.54 -2.39 -0.01 1.44 16 4 C 0.06 1.11 3.35 86.35 0.29 1.40 16 5 N -0.61 -15.77 2.91 -818.44 -2.38 -18.15 16 6 C 0.52 14.45 6.50 87.66 0.57 15.02 16 7 O -0.58 -21.70 15.17 -3.03 -0.05 -21.75 16 8 C -0.04 -0.74 0.60 -52.92 -0.03 -0.77 16 9 C -0.15 -2.27 7.77 71.98 0.56 -1.71 16 10 C -0.16 -1.80 6.81 71.99 0.49 -1.31 16 11 C -0.15 -3.07 4.70 -10.80 -0.05 -3.12 16 12 C -0.18 -2.81 9.58 30.62 0.29 -2.52 16 13 C -0.15 -1.96 9.58 30.62 0.29 -1.67 16 14 C 0.11 3.42 5.15 86.07 0.44 3.86 16 15 C 0.12 4.27 0.84 -10.12 -0.01 4.26 16 16 C -0.15 -6.10 5.93 31.90 0.19 -5.92 16 17 C 0.17 8.93 5.89 86.88 0.51 9.44 16 18 N -0.62 -34.13 3.40 -692.51 -2.36 -36.48 16 19 C -0.24 -13.98 10.28 84.03 0.86 -13.11 16 20 H 0.08 4.66 7.83 -2.91 -0.02 4.64 16 21 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 22 N -0.95 -58.58 10.09 21.65 0.22 -58.36 16 23 Si 0.98 47.00 29.55 68.60 2.03 49.03 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 25 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 26 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 27 C 0.15 6.53 6.60 86.47 0.57 7.10 16 28 O -0.37 -12.78 9.87 -148.98 -1.47 -14.25 16 29 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.10 1.46 8.11 -2.39 -0.02 1.44 16 33 H 0.15 1.69 2.93 -2.39 -0.01 1.68 16 34 H 0.07 1.06 4.21 -2.39 -0.01 1.05 16 35 H 0.10 0.85 7.65 -2.39 -0.02 0.83 16 36 H 0.05 0.92 8.08 -2.39 -0.02 0.90 16 37 H 0.06 0.82 6.37 -2.39 -0.02 0.80 16 38 H 0.10 0.56 7.47 -2.39 -0.02 0.55 16 39 H 0.08 0.78 4.63 -2.39 -0.01 0.77 16 40 H 0.08 2.12 7.49 -2.39 -0.02 2.10 16 41 H 0.12 1.40 5.74 -2.39 -0.01 1.39 16 42 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 43 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 44 H 0.12 0.95 7.40 -2.39 -0.02 0.93 16 45 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 46 H 0.08 2.92 6.94 -2.39 -0.02 2.91 16 47 H 0.06 2.45 7.86 -2.39 -0.02 2.43 16 48 H 0.08 2.93 6.00 -2.38 -0.01 2.92 16 49 H 0.07 4.23 5.88 -2.39 -0.01 4.22 16 50 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 51 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 52 H 0.03 1.52 8.06 -2.39 -0.02 1.51 16 53 H 0.05 1.97 7.79 -2.39 -0.02 1.95 16 Total: -1.00 -77.50 385.18 3.13 -74.37 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.91 Total: 18.37 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 6.23 Total: 7.21 kcal Atomic # 7 Polarization: -108.47 SS G_CDS: -4.52 Total: -112.99 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -1.52 Total: -35.99 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -77.50 3.13 -74.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071202242.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.854 kcal (2) G-P(sol) polarization free energy of solvation -77.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds