Wall clock time and date at job start Tue Mar 31 2020 21:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46744 * 2 1 4 4 C 1.52997 * 109.47735 * 120.00184 * 2 1 3 5 5 C 1.50702 * 115.55722 * 29.48289 * 4 2 1 6 6 O 1.21275 * 120.00181 * 270.13562 * 5 4 2 7 7 N 1.34782 * 119.99617 * 90.14003 * 5 4 2 8 8 C 1.47165 * 121.06150 * 354.49642 * 7 5 4 9 9 C 1.53283 * 108.53328 * 231.10265 * 8 7 5 10 10 H 1.09002 * 109.51104 * 67.03864 * 9 8 7 11 11 C 1.52993 * 109.50966 * 187.13248 * 9 8 7 12 12 O 1.43092 * 109.23509 * 307.11373 * 9 8 7 13 13 C 1.42054 * 114.34274 * 61.15348 * 12 9 8 14 14 C 1.54489 * 110.38468 * 177.18939 * 13 12 9 15 15 C 1.55025 * 101.53014 * 276.05479 * 14 13 12 16 16 N 1.47487 * 104.90258 * 323.63830 * 15 14 13 17 17 C 1.36933 * 125.66337 * 203.98388 * 16 15 14 18 18 H 1.07994 * 120.00578 * 180.02562 * 17 16 15 19 19 C 1.38819 * 119.99749 * 0.03201 * 17 16 15 20 20 N 1.31613 * 120.00444 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99646 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47457 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47147 * 120.00202 * 21 19 17 24 24 H 1.48502 * 109.46861 * 239.99574 * 21 19 17 25 25 C 1.47188 * 108.67521 * 24.01333 * 16 15 14 26 26 C 1.47306 * 121.05554 * 174.20902 * 7 5 4 27 27 C 1.52994 * 117.49889 * 243.80184 * 4 2 1 28 28 C 1.52990 * 117.49991 * 175.17358 * 4 2 1 29 29 H 1.09000 * 109.46660 * 304.83809 * 1 2 3 30 30 H 1.08996 * 109.47663 * 64.83697 * 1 2 3 31 31 H 1.09003 * 109.47011 * 184.84506 * 1 2 3 32 32 H 1.08996 * 109.46936 * 240.00562 * 2 1 3 33 33 H 1.09004 * 109.46719 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47348 * 300.00143 * 3 2 1 35 35 H 1.08996 * 109.46945 * 60.00567 * 3 2 1 36 36 H 1.09006 * 109.62223 * 350.81192 * 8 7 5 37 37 H 1.08994 * 109.62923 * 111.38555 * 8 7 5 38 38 H 1.08997 * 109.47185 * 59.99944 * 11 9 8 39 39 H 1.09002 * 109.47261 * 179.97438 * 11 9 8 40 40 H 1.09004 * 109.47491 * 299.99774 * 11 9 8 41 41 H 1.09005 * 111.01694 * 34.11483 * 14 13 12 42 42 H 1.09002 * 111.01927 * 157.98943 * 14 13 12 43 43 H 1.09000 * 110.35522 * 204.78855 * 15 14 13 44 44 H 1.08995 * 110.44535 * 82.54126 * 15 14 13 45 45 H 0.96997 * 120.00397 * 180.02562 * 20 19 17 46 46 H 1.09000 * 109.90637 * 239.11646 * 25 16 15 47 47 H 1.08997 * 109.91169 * 117.84425 * 25 16 15 48 48 H 1.09000 * 109.67964 * 250.34800 * 26 7 5 49 49 H 1.09000 * 109.68055 * 10.89846 * 26 7 5 50 50 H 1.09004 * 117.50211 * 359.97438 * 27 4 2 51 51 H 1.09003 * 117.50171 * 145.02240 * 27 4 2 52 52 H 1.09002 * 117.50136 * 214.97490 * 28 4 2 53 53 H 1.09001 * 117.50236 * 0.02562 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0402 -0.7212 1.2491 5 6 1.1412 -1.8045 1.7871 6 8 0.2905 -1.5344 2.6082 7 7 1.2827 -3.0736 1.3558 8 6 2.2237 -3.4077 0.2748 9 6 1.4784 -4.2282 -0.7838 10 1 0.7298 -3.6020 -1.2692 11 6 2.4729 -4.7384 -1.8285 12 8 0.8351 -5.3394 -0.1522 13 6 -0.1322 -4.9787 0.8237 14 6 -0.8170 -6.2404 1.3945 15 6 -1.9196 -6.5002 0.3361 16 7 -2.3709 -5.1587 -0.0786 17 6 -3.5931 -4.8590 -0.6184 18 1 -3.8282 -3.8407 -0.8908 19 6 -4.5301 -5.8641 -0.8154 20 7 -4.2437 -7.1051 -0.4838 21 14 -6.1977 -5.4551 -1.5511 22 1 -6.2697 -3.9994 -1.8356 23 1 -6.3818 -6.2154 -2.8135 24 1 -7.2672 -5.8257 -0.5897 25 6 -1.2890 -4.1956 0.1834 26 6 0.5048 -4.1713 1.9557 27 6 2.8405 0.1001 2.2618 28 6 3.5506 -0.9277 1.3784 29 1 -0.3633 0.5871 0.8435 30 1 -0.3634 0.4369 -0.9301 31 1 -0.3633 -1.0240 0.0868 32 1 1.8933 -0.5137 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 2.6055 -2.4908 -0.1745 37 1 3.0503 -3.9934 0.6769 38 1 3.2202 -5.3658 -1.3428 39 1 1.9423 -5.3221 -2.5807 40 1 2.9649 -3.8910 -2.3062 41 1 -0.1185 -7.0757 1.4443 42 1 -1.2538 -6.0395 2.3728 43 1 -2.7453 -7.0580 0.7779 44 1 -1.5094 -7.0424 -0.5158 45 1 -4.8983 -7.8075 -0.6218 46 1 -1.6380 -3.4227 0.8682 47 1 -0.9588 -3.7446 -0.7523 48 1 1.1648 -4.8117 2.5408 49 1 -0.2739 -3.7608 2.5985 50 1 3.0041 1.1543 2.0379 51 1 2.7171 -0.1431 3.3171 52 1 3.8942 -1.8470 1.8526 53 1 4.1810 -0.5493 0.5737 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071213877.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:00 Heat of formation + Delta-G solvation = -41.005592 kcal Electronic energy + Delta-G solvation = -32318.741650 eV Core-core repulsion = 28384.457307 eV Total energy + Delta-G solvation = -3934.284343 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.12786 -40.66118 -38.37967 -37.97225 -35.81625 -34.86160 -34.06181 -32.98078 -31.10877 -30.05586 -28.43878 -27.77926 -27.23705 -26.03882 -24.55701 -23.58119 -23.04576 -22.21677 -21.84797 -20.45377 -19.50686 -19.01752 -17.98955 -17.77707 -17.43237 -16.93925 -16.75672 -16.23273 -15.81239 -15.70900 -15.56807 -15.23349 -15.08959 -15.01953 -14.22262 -14.17702 -13.94799 -13.73371 -13.71028 -13.51012 -13.19942 -13.10172 -13.07321 -13.02520 -12.85012 -12.77540 -12.65601 -12.35140 -12.29732 -12.17392 -12.10934 -12.03007 -11.98256 -11.94771 -11.70585 -11.48906 -11.31820 -10.97507 -10.89144 -10.80855 -10.59192 -9.55904 -8.97349 -7.83559 -5.29037 1.41425 1.43153 1.51014 1.53556 1.78032 2.43431 2.57525 2.69642 3.24777 3.32363 3.46932 3.58120 3.61402 3.74725 3.82328 3.84231 3.91045 3.96142 4.06062 4.16082 4.19435 4.31700 4.35366 4.44998 4.50742 4.52272 4.57899 4.64805 4.67244 4.72171 4.74783 4.76905 4.84438 4.89226 4.92297 4.95208 4.95880 5.00664 5.02477 5.08609 5.19364 5.22459 5.27495 5.33114 5.34511 5.37171 5.42301 5.56124 5.73475 6.22841 6.29127 6.32043 7.04122 7.08208 7.68864 8.33827 9.18547 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014109 B = 0.003810 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.047896 B = 7348.019897 C = 8100.402114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.044 4.044 3 C -0.143 4.143 4 C -0.169 4.169 5 C 0.551 3.449 6 O -0.583 6.583 7 N -0.611 5.611 8 C 0.087 3.913 9 C 0.058 3.942 10 H 0.040 0.960 11 C -0.133 4.133 12 O -0.369 6.369 13 C 0.112 3.888 14 C -0.118 4.118 15 C 0.163 3.837 16 N -0.621 5.621 17 C -0.247 4.247 18 H 0.071 0.929 19 C -0.060 4.060 20 N -0.944 5.944 21 Si 0.982 3.018 22 H -0.271 1.271 23 H -0.286 1.286 24 H -0.286 1.286 25 C 0.129 3.871 26 C 0.105 3.895 27 C -0.151 4.151 28 C -0.138 4.138 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.018 0.982 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.123 0.877 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.050 0.950 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.077 0.923 44 H -0.012 1.012 45 H 0.250 0.750 46 H 0.009 0.991 47 H 0.016 0.984 48 H 0.099 0.901 49 H 0.077 0.923 50 H 0.130 0.870 51 H 0.079 0.921 52 H 0.101 0.899 53 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.214 12.889 0.807 26.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.062 4.062 3 C -0.200 4.200 4 C -0.172 4.172 5 C 0.341 3.659 6 O -0.463 6.463 7 N -0.343 5.343 8 C -0.034 4.034 9 C 0.000 4.000 10 H 0.058 0.942 11 C -0.190 4.190 12 O -0.289 6.289 13 C 0.071 3.929 14 C -0.157 4.157 15 C 0.038 3.962 16 N -0.347 5.347 17 C -0.376 4.376 18 H 0.089 0.911 19 C -0.253 4.253 20 N -0.593 5.593 21 Si 0.809 3.191 22 H -0.196 1.196 23 H -0.213 1.213 24 H -0.213 1.213 25 C 0.003 3.997 26 C -0.018 4.018 27 C -0.188 4.188 28 C -0.175 4.175 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.037 0.963 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.141 0.859 37 H 0.118 0.882 38 H 0.098 0.902 39 H 0.069 0.931 40 H 0.123 0.877 41 H 0.116 0.884 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.006 0.994 45 H 0.060 0.940 46 H 0.027 0.973 47 H 0.034 0.966 48 H 0.117 0.883 49 H 0.095 0.905 50 H 0.148 0.852 51 H 0.098 0.902 52 H 0.120 0.880 53 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 22.628 12.763 1.133 26.003 hybrid contribution -1.971 -0.040 -0.241 1.986 sum 20.656 12.722 0.892 24.276 Atomic orbital electron populations 1.21851 0.96873 0.99890 1.01843 1.20565 0.93963 0.97400 0.94283 1.21936 1.02288 0.93379 1.02363 1.21478 0.94301 0.99758 1.01631 1.20255 0.82989 0.82557 0.80080 1.90671 1.36888 1.82214 1.36510 1.48284 1.42060 1.06534 1.37459 1.22711 0.91593 1.02004 0.87125 1.22784 0.94805 0.88484 0.93958 0.94179 1.21710 0.97561 1.03089 0.96660 1.87839 1.53954 1.32376 1.54702 1.22048 0.87132 0.95403 0.88363 1.22862 0.97617 0.96370 0.98861 1.21683 0.94782 0.86654 0.93089 1.44798 1.12027 1.04383 1.73540 1.19401 0.90238 0.94033 1.33882 0.91114 1.25623 1.02163 0.95232 1.02245 1.70038 1.35120 1.00170 1.54021 0.84975 0.79071 0.77579 0.77457 1.19601 1.21310 1.21269 1.21728 0.89267 0.92355 0.96356 1.22089 0.96419 0.88428 0.94906 1.23281 1.00470 0.99306 0.95723 1.23361 0.90035 1.01090 1.03023 0.93644 0.91294 0.96277 0.88991 0.89844 0.91542 0.92673 0.85943 0.88204 0.90241 0.93131 0.87659 0.88435 0.89815 0.90510 0.99362 0.94019 0.97273 0.96622 0.88306 0.90491 0.85200 0.90212 0.88034 0.84447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 8.48 71.98 0.61 -3.21 16 2 C -0.04 -0.77 3.03 -10.79 -0.03 -0.80 16 3 C -0.14 -1.71 7.77 71.98 0.56 -1.15 16 4 C -0.17 -3.27 1.19 -52.93 -0.06 -3.34 16 5 C 0.55 16.23 4.93 87.66 0.43 16.66 16 6 O -0.58 -22.87 16.38 -3.01 -0.05 -22.92 16 7 N -0.61 -16.87 2.93 -817.62 -2.40 -19.27 16 8 C 0.09 1.74 5.03 86.35 0.43 2.18 16 9 C 0.06 1.52 3.17 30.69 0.10 1.62 16 10 H 0.04 1.27 6.22 -2.39 -0.01 1.26 16 11 C -0.13 -2.47 9.57 71.98 0.69 -1.79 16 12 O -0.37 -12.96 9.90 -148.97 -1.48 -14.43 16 13 C 0.11 4.23 0.81 -10.08 -0.01 4.22 16 14 C -0.12 -4.75 6.21 31.79 0.20 -4.55 16 15 C 0.16 8.59 5.89 86.88 0.51 9.10 16 16 N -0.62 -34.98 3.40 -692.47 -2.36 -37.34 16 17 C -0.25 -14.91 10.28 84.04 0.86 -14.05 16 18 H 0.07 4.20 7.83 -2.91 -0.02 4.18 16 19 C -0.06 -3.54 5.49 84.86 0.47 -3.08 16 20 N -0.94 -58.05 10.09 21.65 0.22 -57.83 16 21 Si 0.98 47.59 29.55 68.60 2.03 49.62 16 22 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 24 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 25 C 0.13 6.10 6.34 86.47 0.55 6.65 16 26 C 0.11 3.39 5.25 86.21 0.45 3.84 16 27 C -0.15 -2.34 9.20 30.59 0.28 -2.06 16 28 C -0.14 -1.55 7.84 30.59 0.24 -1.31 16 29 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.02 0.62 6.92 -2.39 -0.02 0.60 16 32 H 0.09 1.33 7.63 -2.39 -0.02 1.31 16 33 H 0.08 0.59 7.18 -2.38 -0.02 0.58 16 34 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.05 0.75 7.22 -2.39 -0.02 0.74 16 36 H 0.12 1.75 5.02 -2.38 -0.01 1.74 16 37 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.10 3.39 8.14 -2.38 -0.02 3.37 16 42 H 0.08 3.20 8.01 -2.39 -0.02 3.19 16 43 H 0.08 4.51 5.88 -2.39 -0.01 4.50 16 44 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 45 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 46 H 0.01 0.48 7.63 -2.39 -0.02 0.46 16 47 H 0.02 0.77 6.00 -2.39 -0.01 0.76 16 48 H 0.10 2.67 8.14 -2.39 -0.02 2.66 16 49 H 0.08 2.89 6.83 -2.39 -0.02 2.88 16 50 H 0.13 1.46 5.82 -2.38 -0.01 1.45 16 51 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 52 H 0.10 1.14 7.93 -2.39 -0.02 1.12 16 53 H 0.14 0.70 7.92 -2.39 -0.02 0.68 16 Total: -1.00 -79.29 395.96 3.13 -76.16 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.88 Total: 17.08 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 6.28 Total: 8.94 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -4.53 Total: -114.44 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -1.52 Total: -37.35 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -79.29 3.13 -76.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071213877.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.151 kcal (2) G-P(sol) polarization free energy of solvation -79.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds