Wall clock time and date at job start Tue Mar 31 2020 20:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.58648 * 2 1 4 4 C 1.53195 * 109.58668 * 120.27885 * 2 1 3 5 5 C 1.53036 * 109.31366 * 174.56546 * 4 2 1 6 6 C 1.53047 * 109.54189 * 298.63866 * 5 4 2 7 7 H 1.08996 * 109.49962 * 181.34734 * 6 5 4 8 8 N 1.46501 * 109.49625 * 301.41381 * 6 5 4 9 9 C 1.34775 * 119.99768 * 204.99855 * 8 6 5 10 10 O 1.21277 * 119.99928 * 5.03157 * 9 8 6 11 11 C 1.50703 * 119.99631 * 185.03718 * 9 8 6 12 12 C 1.52995 * 109.54516 * 66.49667 * 11 9 8 13 13 C 1.52996 * 117.50138 * 128.57020 * 12 11 9 14 14 C 1.52997 * 117.50075 * 59.90621 * 12 11 9 15 15 C 1.53174 * 109.61363 * 186.71897 * 11 9 8 16 16 C 1.53095 * 109.16347 * 62.93051 * 15 11 9 17 17 O 1.42900 * 109.41467 * 57.60874 * 16 15 11 18 18 C 1.42904 * 114.09528 * 298.83681 * 17 16 15 19 19 C 1.53090 * 109.41120 * 61.16384 * 18 17 16 20 20 C 1.53198 * 109.30863 * 61.36231 * 6 5 4 21 21 N 1.46921 * 109.70503 * 239.64227 * 2 1 3 22 22 C 1.36936 * 120.63397 * 6.55650 * 21 2 1 23 23 H 1.08000 * 119.99454 * 328.21894 * 22 21 2 24 24 C 1.38812 * 120.00121 * 148.21020 * 22 21 2 25 25 N 1.31620 * 120.00082 * 347.77609 * 24 22 21 26 26 Si 1.86799 * 119.99703 * 167.78067 * 24 22 21 27 27 H 1.48496 * 109.47185 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47108 * 120.00178 * 26 24 22 29 29 H 1.48497 * 109.47148 * 239.99689 * 26 24 22 30 30 H 1.09003 * 109.47234 * 299.71567 * 1 2 3 31 31 H 1.08998 * 109.46874 * 59.72020 * 1 2 3 32 32 H 1.09000 * 109.47145 * 179.71578 * 1 2 3 33 33 H 1.09000 * 109.49574 * 54.62152 * 4 2 1 34 34 H 1.09002 * 109.52786 * 294.53760 * 4 2 1 35 35 H 1.08997 * 109.46583 * 178.61511 * 5 4 2 36 36 H 1.09000 * 109.45088 * 58.64885 * 5 4 2 37 37 H 0.97006 * 119.99632 * 24.99955 * 8 6 5 38 38 H 1.09006 * 115.55231 * 274.24123 * 12 11 9 39 39 H 1.09005 * 117.49752 * 359.97438 * 13 12 11 40 40 H 1.09001 * 117.50536 * 145.02022 * 13 12 11 41 41 H 1.08998 * 117.50219 * 214.97871 * 14 12 11 42 42 H 1.08997 * 117.49923 * 359.97438 * 14 12 11 43 43 H 1.09006 * 109.51977 * 182.83501 * 15 11 9 44 44 H 1.08999 * 109.52691 * 303.02325 * 15 11 9 45 45 H 1.08994 * 109.47688 * 297.62421 * 16 15 11 46 46 H 1.08999 * 109.48770 * 177.59747 * 16 15 11 47 47 H 1.08996 * 109.48353 * 301.18235 * 18 17 16 48 48 H 1.09003 * 109.48952 * 181.14586 * 18 17 16 49 49 H 1.09004 * 109.52315 * 182.47884 * 19 18 17 50 50 H 1.09004 * 109.52373 * 62.29774 * 19 18 17 51 51 H 1.09001 * 109.58834 * 65.15677 * 20 6 5 52 52 H 1.08998 * 109.58165 * 185.57929 * 20 6 5 53 53 H 0.96999 * 120.00063 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7277 1.2464 5 6 3.5678 -0.8433 1.1730 6 6 3.9604 -1.6608 -0.0598 7 1 5.0449 -1.7629 -0.0983 8 7 3.3467 -2.9887 0.0183 9 6 3.9062 -4.0289 -0.6309 10 8 4.9656 -3.8871 -1.2039 11 6 3.2152 -5.3681 -0.6448 12 6 1.9101 -5.2625 -1.4362 13 6 1.6703 -6.2904 -2.5437 14 6 2.0060 -4.8410 -2.9039 15 6 4.1276 -6.4107 -1.2981 16 6 5.3965 -6.5663 -0.4557 17 8 5.0393 -6.9407 0.8764 18 6 4.2254 -5.9810 1.5537 19 6 2.9095 -5.8019 0.7921 20 6 3.4686 -0.9435 -1.3209 21 7 2.0254 -0.6991 -1.1935 22 6 1.1586 -1.1144 -2.1689 23 1 0.1543 -1.4132 -1.9072 24 6 1.5708 -1.1512 -3.4939 25 7 2.6960 -0.5682 -3.8496 26 14 0.5285 -2.0281 -4.7722 27 1 -0.6784 -2.5975 -4.1208 28 1 0.1159 -1.0620 -5.8218 29 1 1.3197 -3.1223 -5.3901 30 1 -0.3634 0.5094 0.8925 31 1 -0.3633 0.5182 -0.8875 32 1 -0.3633 -1.0277 -0.0051 33 1 1.6050 -1.7246 1.2922 34 1 1.7637 -0.1659 2.1376 35 1 3.9381 -1.3389 2.0704 36 1 4.0043 0.1530 1.1021 37 1 2.5376 -3.1193 0.5373 38 1 1.0433 -4.9210 -0.8702 39 1 2.4425 -7.0418 -2.7088 40 1 0.6458 -6.6251 -2.7066 41 1 1.2022 -4.2228 -3.3036 42 1 2.9988 -4.6386 -3.3055 43 1 3.6072 -7.3669 -1.3529 44 1 4.3952 -6.0825 -2.3024 45 1 5.9372 -5.6202 -0.4348 46 1 6.0305 -7.3379 -0.8925 47 1 4.7509 -5.0272 1.6008 48 1 4.0156 -6.3308 2.5645 49 1 2.3058 -5.0382 1.2825 50 1 2.3645 -6.7458 0.7795 51 1 3.9920 0.0065 -1.4287 52 1 3.6577 -1.5683 -2.1938 53 1 2.9842 -0.5943 -4.7754 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071705843.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:46 Heat of formation + Delta-G solvation = -58.021330 kcal Electronic energy + Delta-G solvation = -33395.954407 eV Core-core repulsion = 29460.932206 eV Total energy + Delta-G solvation = -3935.022201 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.12306 -40.03294 -38.65761 -38.12174 -35.77407 -34.50220 -33.94023 -32.30207 -31.76050 -31.53002 -27.94771 -27.23231 -26.49567 -24.70861 -24.08195 -23.71103 -22.83579 -22.23151 -21.99968 -20.38675 -20.18463 -18.17306 -17.81325 -17.60589 -17.12501 -16.93577 -16.63252 -16.16428 -15.97240 -15.71107 -15.46526 -15.39962 -15.14656 -14.92497 -14.63206 -14.42652 -14.18343 -13.97373 -13.63913 -13.33264 -13.21574 -13.06346 -12.84652 -12.69680 -12.58642 -12.57042 -12.41090 -12.40315 -12.11129 -12.06181 -12.02916 -11.80846 -11.56823 -11.52011 -11.40492 -11.19254 -11.07180 -11.02490 -10.55407 -10.46505 -10.27073 -9.81820 -8.50018 -7.78835 -5.25968 1.37025 1.39444 1.47232 1.76734 2.39133 2.50000 2.87283 2.94664 3.39243 3.43225 3.63397 3.66216 3.76477 3.95560 4.01946 4.07870 4.09337 4.11619 4.12385 4.19997 4.29181 4.35854 4.51635 4.57246 4.63134 4.65867 4.67710 4.76261 4.78231 4.79995 4.84514 4.87896 4.98633 5.01106 5.02966 5.06161 5.08391 5.12469 5.13055 5.18751 5.23810 5.28059 5.28749 5.35000 5.58981 5.63582 5.74128 5.77108 5.81123 6.22347 6.48507 6.77356 7.23093 7.46634 7.96212 8.48611 9.26641 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011174 B = 0.006096 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.249403 B = 4591.878451 C = 5920.745620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.153 3.847 3 H 0.009 0.991 4 C -0.117 4.117 5 C -0.110 4.110 6 C 0.127 3.873 7 H 0.058 0.942 8 N -0.686 5.686 9 C 0.524 3.476 10 O -0.590 6.590 11 C -0.041 4.041 12 C -0.128 4.128 13 C -0.153 4.153 14 C -0.193 4.193 15 C -0.128 4.128 16 C 0.056 3.944 17 O -0.391 6.391 18 C 0.055 3.945 19 C -0.134 4.134 20 C 0.178 3.822 21 N -0.589 5.589 22 C -0.221 4.221 23 H 0.073 0.927 24 C -0.041 4.041 25 N -0.937 5.937 26 Si 0.931 3.069 27 H -0.257 1.257 28 H -0.307 1.307 29 H -0.295 1.295 30 H 0.074 0.926 31 H 0.033 0.967 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.404 0.596 38 H 0.121 0.879 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.102 0.898 44 H 0.057 0.943 45 H 0.042 0.958 46 H 0.105 0.895 47 H 0.032 0.968 48 H 0.125 0.875 49 H 0.094 0.906 50 H 0.104 0.896 51 H -0.011 1.011 52 H 0.045 0.955 53 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.630 -11.199 14.471 18.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.048 3.952 3 H 0.027 0.973 4 C -0.156 4.156 5 C -0.148 4.148 6 C 0.021 3.979 7 H 0.076 0.924 8 N -0.336 5.336 9 C 0.312 3.688 10 O -0.471 6.471 11 C -0.044 4.044 12 C -0.146 4.146 13 C -0.189 4.189 14 C -0.230 4.230 15 C -0.165 4.165 16 C -0.020 4.020 17 O -0.310 6.310 18 C -0.021 4.021 19 C -0.171 4.171 20 C 0.051 3.949 21 N -0.313 5.313 22 C -0.352 4.352 23 H 0.090 0.910 24 C -0.236 4.236 25 N -0.585 5.585 26 Si 0.762 3.238 27 H -0.181 1.181 28 H -0.236 1.236 29 H -0.222 1.222 30 H 0.092 0.908 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.241 0.759 38 H 0.139 0.861 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.120 0.880 44 H 0.076 0.924 45 H 0.060 0.940 46 H 0.123 0.877 47 H 0.051 0.949 48 H 0.143 0.857 49 H 0.112 0.888 50 H 0.123 0.877 51 H 0.007 0.993 52 H 0.064 0.936 53 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.810 -11.223 14.019 18.049 hybrid contribution -0.385 0.741 -1.980 2.149 sum -2.195 -10.482 12.039 16.113 Atomic orbital electron populations 1.21704 0.94634 1.01407 1.00671 1.20764 0.94150 0.93075 0.87217 0.97300 1.21936 0.94496 1.01115 0.98024 1.21651 0.97431 0.99694 0.96050 1.21432 0.96040 0.82917 0.97543 0.92426 1.45685 1.29367 1.07536 1.51042 1.20771 0.84390 0.86659 0.77008 1.90610 1.24806 1.85361 1.46351 1.20363 0.94320 0.91443 0.98306 1.22140 0.97364 1.05030 0.90092 1.23288 1.03962 0.91213 1.00471 1.22686 1.01043 0.99603 0.99657 1.22129 0.96472 0.98834 0.99111 1.22685 0.96008 1.00972 0.82346 1.87861 1.70347 1.45815 1.27019 1.22759 0.90003 0.92227 0.97156 1.22274 0.98871 1.04450 0.91524 1.20769 0.84322 0.94818 0.95016 1.44159 1.01969 1.65302 1.19863 1.19281 0.95809 1.34363 0.85721 0.90968 1.25598 0.98326 1.00884 0.98802 1.70136 1.25016 1.47562 1.15786 0.85794 0.79438 0.78025 0.80505 1.18122 1.23569 1.22234 0.90761 0.94817 0.92786 0.91640 0.89342 0.89751 0.91388 0.75881 0.86064 0.86957 0.86797 0.90846 0.92355 0.87991 0.92445 0.93958 0.87671 0.94928 0.85717 0.88792 0.87741 0.99333 0.93628 0.95148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 7.97 71.98 0.57 -3.52 16 2 C 0.15 5.57 3.49 44.98 0.16 5.73 16 3 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 4 C -0.12 -3.11 5.21 30.67 0.16 -2.96 16 5 C -0.11 -3.10 5.59 30.62 0.17 -2.93 16 6 C 0.13 4.73 2.85 45.07 0.13 4.86 16 7 H 0.06 2.33 7.51 -2.39 -0.02 2.31 16 8 N -0.69 -22.67 4.79 -442.15 -2.12 -24.79 16 9 C 0.52 18.70 4.66 87.66 0.41 19.11 16 10 O -0.59 -26.30 13.76 -3.02 -0.04 -26.35 16 11 C -0.04 -1.13 0.52 -52.81 -0.03 -1.16 16 12 C -0.13 -3.62 5.13 -10.80 -0.06 -3.67 16 13 C -0.15 -3.90 9.58 30.62 0.29 -3.61 16 14 C -0.19 -7.09 9.55 30.62 0.29 -6.80 16 15 C -0.13 -3.47 3.15 30.68 0.10 -3.37 16 16 C 0.06 1.55 6.56 72.01 0.47 2.02 16 17 O -0.39 -10.06 10.77 -148.98 -1.60 -11.66 16 18 C 0.06 1.16 6.62 72.01 0.48 1.64 16 19 C -0.13 -2.63 4.79 30.68 0.15 -2.48 16 20 C 0.18 8.62 4.86 86.36 0.42 9.04 16 21 N -0.59 -27.02 2.90 -675.22 -1.96 -28.98 16 22 C -0.22 -11.23 8.54 84.03 0.72 -10.51 16 23 H 0.07 3.53 6.29 -2.91 -0.02 3.52 16 24 C -0.04 -2.29 5.01 84.86 0.42 -1.86 16 25 N -0.94 -57.07 11.18 21.65 0.24 -56.83 16 26 Si 0.93 45.33 27.03 68.60 1.85 47.18 16 27 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 28 H -0.31 -15.44 7.11 99.48 0.71 -14.73 16 29 H -0.29 -14.67 7.11 99.48 0.71 -13.97 16 30 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.03 1.25 7.69 -2.39 -0.02 1.23 16 32 H 0.05 1.71 7.40 -2.39 -0.02 1.69 16 33 H 0.07 1.63 6.40 -2.39 -0.02 1.62 16 34 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.40 11.30 5.65 -92.70 -0.52 10.78 16 38 H 0.12 3.13 8.12 -2.38 -0.02 3.11 16 39 H 0.11 2.54 5.83 -2.38 -0.01 2.53 16 40 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.07 3.03 5.26 -2.39 -0.01 3.02 16 42 H 0.06 2.55 7.67 -2.39 -0.02 2.53 16 43 H 0.10 2.24 6.78 -2.38 -0.02 2.23 16 44 H 0.06 1.85 7.14 -2.39 -0.02 1.83 16 45 H 0.04 1.43 6.06 -2.39 -0.01 1.41 16 46 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 47 H 0.03 0.80 7.38 -2.39 -0.02 0.79 16 48 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 49 H 0.09 1.53 7.06 -2.38 -0.02 1.51 16 50 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 51 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 52 H 0.05 2.67 6.19 -2.39 -0.01 2.65 16 53 H 0.24 14.58 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -70.80 383.97 1.62 -69.18 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: 0.38 Total: 32.71 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 4.86 Total: -0.47 kcal Atomic # 7 Polarization: -106.77 SS G_CDS: -3.83 Total: -110.60 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -1.65 Total: -38.01 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.85 Total: 47.18 kcal Total: -70.80 1.62 -69.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071705843.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.162 kcal (2) G-P(sol) polarization free energy of solvation -70.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds