Wall clock time and date at job start Tue Mar 31 2020 20:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.58637 * 2 1 4 4 C 1.53193 * 109.58597 * 239.71222 * 2 1 3 5 5 C 1.53033 * 109.31291 * 185.57783 * 4 2 1 6 6 C 1.53043 * 109.53516 * 61.36856 * 5 4 2 7 7 H 1.09005 * 109.49380 * 178.68014 * 6 5 4 8 8 N 1.46496 * 109.49951 * 58.61929 * 6 5 4 9 9 C 1.34778 * 120.00127 * 155.05985 * 8 6 5 10 10 O 1.21278 * 120.00194 * 355.44861 * 9 8 6 11 11 C 1.50702 * 120.00010 * 175.44396 * 9 8 6 12 12 C 1.52997 * 109.54334 * 67.55062 * 11 9 8 13 13 C 1.53004 * 117.49809 * 2.95950 * 12 11 9 14 14 C 1.52995 * 117.50410 * 294.33596 * 12 11 9 15 15 C 1.53185 * 109.54233 * 307.37905 * 11 9 8 16 16 C 1.53281 * 109.06069 * 297.02713 * 15 11 9 17 17 O 1.42895 * 109.46285 * 302.44551 * 16 15 11 18 18 C 1.42899 * 114.10106 * 61.16005 * 17 16 15 19 19 C 1.53090 * 109.41450 * 298.84628 * 18 17 16 20 20 C 1.53185 * 109.34039 * 298.64833 * 6 5 4 21 21 N 1.46928 * 109.58276 * 120.42674 * 2 1 3 22 22 C 1.36939 * 120.63323 * 353.39548 * 21 2 1 23 23 H 1.08000 * 119.99642 * 33.87560 * 22 21 2 24 24 C 1.38815 * 119.99735 * 213.86858 * 22 21 2 25 25 N 1.31614 * 120.00264 * 8.32922 * 24 22 21 26 26 Si 1.86801 * 119.99431 * 188.32515 * 24 22 21 27 27 H 1.48493 * 109.47335 * 60.00205 * 26 24 22 28 28 H 1.48507 * 109.46728 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47209 * 300.00028 * 26 24 22 30 30 H 1.09000 * 109.46975 * 180.28426 * 1 2 3 31 31 H 1.09003 * 109.47129 * 300.28408 * 1 2 3 32 32 H 1.09000 * 109.47070 * 60.28476 * 1 2 3 33 33 H 1.09003 * 109.49656 * 65.62805 * 4 2 1 34 34 H 1.08997 * 109.52397 * 305.55253 * 4 2 1 35 35 H 1.08993 * 109.46322 * 301.34782 * 5 4 2 36 36 H 1.09006 * 109.46016 * 181.38562 * 5 4 2 37 37 H 0.97006 * 120.00107 * 335.06586 * 8 6 5 38 38 H 1.09005 * 115.54913 * 148.65712 * 12 11 9 39 39 H 1.08995 * 117.49700 * 359.97438 * 13 12 11 40 40 H 1.09001 * 117.50122 * 145.01568 * 13 12 11 41 41 H 1.08999 * 117.49924 * 214.97784 * 14 12 11 42 42 H 1.09006 * 117.49729 * 359.97438 * 14 12 11 43 43 H 1.08995 * 109.52181 * 57.01558 * 15 11 9 44 44 H 1.08999 * 109.52098 * 177.20709 * 15 11 9 45 45 H 1.09008 * 109.45612 * 182.44777 * 16 15 11 46 46 H 1.08999 * 109.45802 * 62.44559 * 16 15 11 47 47 H 1.08997 * 109.48697 * 178.85981 * 18 17 16 48 48 H 1.09004 * 109.49174 * 58.82787 * 18 17 16 49 49 H 1.09004 * 109.52167 * 297.69810 * 19 18 17 50 50 H 1.08999 * 109.52416 * 177.51150 * 19 18 17 51 51 H 1.09000 * 109.58964 * 174.40546 * 20 6 5 52 52 H 1.08997 * 109.58821 * 294.83484 * 20 6 5 53 53 H 0.96991 * 120.00340 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 -1.2463 5 6 3.5675 -0.8466 -1.1712 6 6 3.9568 -1.6659 0.0615 7 1 5.0412 -1.7699 0.1015 8 7 3.3411 -2.9927 -0.0188 9 6 3.8972 -4.0342 0.6313 10 8 4.9511 -3.8923 1.2144 11 6 3.2093 -5.3751 0.6337 12 6 3.2268 -5.9618 -0.7792 13 6 3.9579 -5.1689 -1.8644 14 6 2.4291 -5.2279 -1.8589 15 6 1.7601 -5.2068 1.1007 16 6 1.7560 -4.6929 2.5448 17 8 2.4760 -5.6049 3.3767 18 6 3.8489 -5.7657 3.0145 19 6 3.9378 -6.3229 1.5914 20 6 3.4650 -0.9494 1.3229 21 7 2.0225 -0.7011 1.1936 22 6 1.1536 -1.1158 2.1674 23 1 0.1602 -1.4447 1.9002 24 6 1.5498 -1.1136 3.4978 25 7 2.6941 -0.5624 3.8429 26 14 0.4585 -1.8927 4.7984 27 1 0.2639 -3.3310 4.4845 28 1 1.1026 -1.7589 6.1299 29 1 -0.8586 -1.2071 4.8151 30 1 -0.3633 -1.0277 0.0051 31 1 -0.3633 0.5183 0.8874 32 1 -0.3633 0.5094 -0.8925 33 1 1.7661 -0.1643 -2.1370 34 1 1.6029 -1.7237 -1.2940 35 1 4.0061 0.1485 -1.0991 36 1 3.9378 -1.3424 -2.0685 37 1 2.5331 -3.1218 -0.5399 38 1 3.2683 -7.0496 -0.8360 39 1 4.4261 -4.2291 -1.5718 40 1 4.4807 -5.7349 -2.6354 41 1 1.9460 -5.8328 -2.6263 42 1 1.8914 -4.3272 -1.5626 43 1 1.2505 -4.4911 0.4557 44 1 1.2488 -6.1683 1.0551 45 1 0.7281 -4.6121 2.8985 46 1 2.2318 -3.7130 2.5829 47 1 4.3288 -6.4578 3.7065 48 1 4.3523 -4.7999 3.0587 49 1 3.4704 -7.3070 1.5556 50 1 4.9841 -6.4048 1.2970 51 1 3.6516 -1.5758 2.1952 52 1 3.9902 -0.0007 1.4326 53 1 2.9707 -0.5605 4.7725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071705844.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:51 Heat of formation + Delta-G solvation = -53.001485 kcal Electronic energy + Delta-G solvation = -33983.448741 eV Core-core repulsion = 30048.644217 eV Total energy + Delta-G solvation = -3934.804524 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.28975 -39.92549 -38.78447 -37.98837 -35.74283 -34.49936 -33.92929 -32.40610 -31.76353 -31.55469 -27.89709 -27.15751 -26.53466 -24.76213 -24.04808 -23.70830 -22.87013 -22.09138 -21.89328 -20.50146 -20.35781 -18.21997 -17.94907 -17.41900 -17.09919 -16.93941 -16.48446 -16.27139 -15.87329 -15.77154 -15.65453 -15.31868 -15.09273 -14.77252 -14.60760 -14.35862 -14.19905 -13.98089 -13.64149 -13.47924 -13.20567 -12.92702 -12.84872 -12.71320 -12.58283 -12.49220 -12.41879 -12.29056 -12.19324 -12.13405 -12.07826 -11.99466 -11.56932 -11.47769 -11.34017 -11.18891 -11.04992 -10.92040 -10.52627 -10.46670 -10.28855 -9.83017 -8.46845 -7.78955 -5.29277 1.40969 1.44964 1.48086 1.76867 2.34741 2.50915 2.86977 2.94754 3.39443 3.45708 3.61314 3.66003 3.77155 3.91184 4.00852 4.06759 4.08326 4.11478 4.18622 4.19864 4.32026 4.39409 4.51511 4.59933 4.66742 4.66921 4.68917 4.76954 4.79816 4.81684 4.86237 4.92778 4.98325 5.03203 5.05363 5.07255 5.07938 5.11596 5.13246 5.19423 5.26680 5.27547 5.29437 5.33919 5.59741 5.63059 5.73845 5.76805 5.79708 6.23272 6.49257 6.73812 7.23638 7.43141 7.95390 8.49079 9.25575 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009980 B = 0.007502 C = 0.005291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.845940 B = 3731.360061 C = 5290.481900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.154 3.846 3 H 0.010 0.990 4 C -0.117 4.117 5 C -0.111 4.111 6 C 0.124 3.876 7 H 0.059 0.941 8 N -0.689 5.689 9 C 0.524 3.476 10 O -0.587 6.587 11 C -0.046 4.046 12 C -0.143 4.143 13 C -0.190 4.190 14 C -0.162 4.162 15 C -0.124 4.124 16 C 0.053 3.947 17 O -0.401 6.401 18 C 0.048 3.952 19 C -0.116 4.116 20 C 0.179 3.821 21 N -0.591 5.591 22 C -0.225 4.225 23 H 0.074 0.926 24 C -0.038 4.038 25 N -0.936 5.936 26 Si 0.926 3.074 27 H -0.260 1.260 28 H -0.314 1.314 29 H -0.277 1.277 30 H 0.053 0.947 31 H 0.034 0.966 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.403 0.597 38 H 0.138 0.862 39 H 0.078 0.922 40 H 0.113 0.887 41 H 0.126 0.874 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.103 0.897 45 H 0.087 0.913 46 H 0.035 0.965 47 H 0.106 0.894 48 H 0.029 0.971 49 H 0.102 0.898 50 H 0.079 0.921 51 H 0.045 0.955 52 H -0.010 1.010 53 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.107 -10.743 -15.966 19.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.049 3.951 3 H 0.028 0.972 4 C -0.156 4.156 5 C -0.148 4.148 6 C 0.018 3.982 7 H 0.077 0.923 8 N -0.342 5.342 9 C 0.311 3.689 10 O -0.468 6.468 11 C -0.049 4.049 12 C -0.162 4.162 13 C -0.227 4.227 14 C -0.198 4.198 15 C -0.162 4.162 16 C -0.024 4.024 17 O -0.321 6.321 18 C -0.029 4.029 19 C -0.154 4.154 20 C 0.052 3.948 21 N -0.314 5.314 22 C -0.356 4.356 23 H 0.091 0.909 24 C -0.233 4.233 25 N -0.582 5.582 26 Si 0.756 3.244 27 H -0.185 1.185 28 H -0.241 1.241 29 H -0.203 1.203 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.242 0.758 38 H 0.156 0.844 39 H 0.096 0.904 40 H 0.132 0.868 41 H 0.144 0.856 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.121 0.879 45 H 0.105 0.895 46 H 0.053 0.947 47 H 0.124 0.876 48 H 0.048 0.952 49 H 0.121 0.879 50 H 0.098 0.902 51 H 0.063 0.937 52 H 0.008 0.992 53 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.432 -10.679 -15.253 18.674 hybrid contribution -0.174 0.560 1.533 1.641 sum -1.606 -10.119 -13.720 17.123 Atomic orbital electron populations 1.21709 0.94593 1.01443 1.00687 1.20756 0.94186 0.93071 0.87098 0.97183 1.21942 0.94537 1.00923 0.98215 1.21649 0.97420 0.99748 0.96031 1.21474 0.96148 0.82981 0.97642 0.92311 1.45988 1.29714 1.07598 1.50875 1.20764 0.84566 0.86657 0.76894 1.90618 1.25075 1.85453 1.45635 1.20484 0.95827 0.91615 0.96961 1.22229 1.07175 0.99839 0.86913 1.23253 0.95853 1.02022 1.01605 1.23108 0.93418 1.02338 1.00969 1.22188 0.94663 1.03834 0.95476 1.22756 0.96623 0.91854 0.91166 1.87814 1.23130 1.64761 1.56374 1.22773 0.82301 1.00529 0.97260 1.21951 1.01582 0.98776 0.93094 1.20763 0.84435 0.94845 0.94789 1.44147 1.01959 1.65251 1.20084 1.19185 0.96619 1.34423 0.85359 0.90880 1.25684 0.98005 1.00563 0.99060 1.70096 1.23683 1.48736 1.15730 0.86028 0.79027 0.80187 0.79176 1.18520 1.24143 1.20282 0.92750 0.94725 0.90828 0.89314 0.92020 0.91241 0.89895 0.75788 0.84442 0.90356 0.86840 0.85585 0.89601 0.89843 0.87863 0.89464 0.94675 0.87565 0.95235 0.87916 0.90245 0.93668 0.99237 0.95148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 7.99 71.98 0.57 -3.51 16 2 C 0.15 5.60 3.50 44.98 0.16 5.76 16 3 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 4 C -0.12 -3.17 5.20 30.67 0.16 -3.01 16 5 C -0.11 -3.14 5.59 30.62 0.17 -2.97 16 6 C 0.12 4.63 2.85 45.07 0.13 4.75 16 7 H 0.06 2.37 7.52 -2.38 -0.02 2.35 16 8 N -0.69 -22.88 3.36 -442.17 -1.49 -24.37 16 9 C 0.52 18.79 3.41 87.66 0.30 19.09 16 10 O -0.59 -26.22 13.79 -3.02 -0.04 -26.27 16 11 C -0.05 -1.28 0.53 -52.81 -0.03 -1.31 16 12 C -0.14 -2.85 5.25 -10.80 -0.06 -2.91 16 13 C -0.19 -3.77 9.52 30.60 0.29 -3.48 16 14 C -0.16 -2.66 9.25 30.59 0.28 -2.38 16 15 C -0.12 -3.53 4.54 30.75 0.14 -3.39 16 16 C 0.05 2.03 6.48 72.08 0.47 2.50 16 17 O -0.40 -15.83 10.77 -148.98 -1.60 -17.44 16 18 C 0.05 1.70 6.56 72.01 0.47 2.17 16 19 C -0.12 -3.27 4.51 30.68 0.14 -3.13 16 20 C 0.18 8.64 4.83 86.36 0.42 9.06 16 21 N -0.59 -26.96 2.89 -675.20 -1.95 -28.91 16 22 C -0.23 -11.34 8.22 84.03 0.69 -10.64 16 23 H 0.07 3.52 6.34 -2.91 -0.02 3.50 16 24 C -0.04 -2.09 4.82 84.86 0.41 -1.69 16 25 N -0.94 -56.97 11.11 21.65 0.24 -56.73 16 26 Si 0.93 45.46 29.56 68.60 2.03 47.49 16 27 H -0.26 -12.07 5.84 99.48 0.58 -11.48 16 28 H -0.31 -16.47 7.11 99.48 0.71 -15.76 16 29 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 30 H 0.05 1.71 7.38 -2.39 -0.02 1.69 16 31 H 0.03 1.28 7.70 -2.39 -0.02 1.26 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.06 1.58 6.40 -2.39 -0.02 1.56 16 35 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.40 11.58 3.18 -92.70 -0.29 11.29 16 38 H 0.14 2.11 8.07 -2.38 -0.02 2.09 16 39 H 0.08 2.00 5.75 -2.39 -0.01 1.99 16 40 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.09 1.56 5.11 -2.38 -0.01 1.55 16 43 H 0.08 2.25 6.23 -2.39 -0.01 2.24 16 44 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.09 3.38 7.03 -2.38 -0.02 3.37 16 46 H 0.03 1.68 6.85 -2.39 -0.02 1.67 16 47 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 48 H 0.03 1.31 6.09 -2.38 -0.01 1.29 16 49 H 0.10 2.27 8.14 -2.38 -0.02 2.25 16 50 H 0.08 2.24 7.92 -2.39 -0.02 2.22 16 51 H 0.04 2.64 6.23 -2.39 -0.01 2.62 16 52 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 53 H 0.24 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -70.19 380.25 2.38 -67.81 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: 0.49 Total: 33.48 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: 4.71 Total: 4.93 kcal Atomic # 7 Polarization: -106.81 SS G_CDS: -3.20 Total: -110.01 kcal Atomic # 8 Polarization: -42.06 SS G_CDS: -1.65 Total: -43.70 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -70.19 2.38 -67.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071705844.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.806 kcal (2) G-P(sol) polarization free energy of solvation -70.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds