Wall clock time and date at job start Tue Mar 31 2020 20:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.58780 * 2 1 4 4 C 1.53193 * 109.58433 * 239.71870 * 2 1 3 5 5 C 1.53041 * 109.31330 * 185.57900 * 4 2 1 6 6 C 1.53043 * 109.53767 * 61.36143 * 5 4 2 7 7 H 1.09004 * 109.49309 * 58.62346 * 6 5 4 8 8 N 1.46504 * 109.49473 * 178.68275 * 6 5 4 9 9 C 1.34770 * 119.99695 * 204.93469 * 8 6 5 10 10 O 1.21280 * 120.00153 * 4.95740 * 9 8 6 11 11 C 1.50700 * 120.00121 * 184.67703 * 9 8 6 12 12 C 1.53003 * 109.54497 * 291.98040 * 11 9 8 13 13 C 1.53002 * 117.49418 * 3.09849 * 12 11 9 14 14 C 1.52996 * 117.49895 * 294.43874 * 12 11 9 15 15 C 1.53177 * 109.54865 * 171.71126 * 11 9 8 16 16 C 1.53093 * 109.16428 * 297.11669 * 15 11 9 17 17 O 1.42906 * 109.41076 * 302.38942 * 16 15 11 18 18 C 1.42905 * 114.09983 * 61.16074 * 17 16 15 19 19 C 1.53095 * 109.41092 * 298.83855 * 18 17 16 20 20 C 1.53185 * 109.33938 * 298.65381 * 6 5 4 21 21 N 1.46923 * 109.58956 * 120.43015 * 2 1 3 22 22 C 1.36939 * 120.62632 * 353.39277 * 21 2 1 23 23 H 1.08005 * 120.00063 * 27.98112 * 22 21 2 24 24 C 1.38813 * 119.99948 * 207.96878 * 22 21 2 25 25 N 1.31617 * 119.99947 * 28.46944 * 24 22 21 26 26 Si 1.86806 * 120.00001 * 208.46232 * 24 22 21 27 27 H 1.48496 * 109.46764 * 94.99693 * 26 24 22 28 28 H 1.48501 * 109.46648 * 214.99284 * 26 24 22 29 29 H 1.48497 * 109.47069 * 334.99328 * 26 24 22 30 30 H 1.08998 * 109.47640 * 180.28493 * 1 2 3 31 31 H 1.09001 * 109.47110 * 300.28296 * 1 2 3 32 32 H 1.08998 * 109.47205 * 60.27977 * 1 2 3 33 33 H 1.09000 * 109.49614 * 65.62728 * 4 2 1 34 34 H 1.08999 * 109.49690 * 305.53183 * 4 2 1 35 35 H 1.09004 * 109.46003 * 301.34545 * 5 4 2 36 36 H 1.08998 * 109.46518 * 181.38931 * 5 4 2 37 37 H 0.97003 * 120.00187 * 24.94379 * 8 6 5 38 38 H 1.08993 * 115.55182 * 148.76324 * 12 11 9 39 39 H 1.09004 * 117.50151 * 359.97438 * 13 12 11 40 40 H 1.09005 * 117.49823 * 145.02100 * 13 12 11 41 41 H 1.08998 * 117.50141 * 214.98124 * 14 12 11 42 42 H 1.09003 * 117.49972 * 359.97438 * 14 12 11 43 43 H 1.09003 * 109.51840 * 57.01746 * 15 11 9 44 44 H 1.08997 * 109.52561 * 177.20539 * 15 11 9 45 45 H 1.08996 * 109.48518 * 182.40989 * 16 15 11 46 46 H 1.08996 * 109.49043 * 62.37551 * 16 15 11 47 47 H 1.09000 * 109.47803 * 178.85947 * 18 17 16 48 48 H 1.08999 * 109.49173 * 58.82476 * 18 17 16 49 49 H 1.09001 * 109.52022 * 297.70231 * 19 18 17 50 50 H 1.09005 * 109.57251 * 177.54754 * 19 18 17 51 51 H 1.09003 * 109.58428 * 174.40836 * 20 6 5 52 52 H 1.08998 * 109.58880 * 294.82620 * 20 6 5 53 53 H 0.96996 * 120.00298 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2464 5 6 3.5674 -0.8465 -1.1713 6 6 3.9568 -1.6658 0.0613 7 1 3.4987 -2.6531 0.0015 8 7 5.4142 -1.8056 0.1150 9 6 5.9676 -2.8485 0.7650 10 8 5.2609 -3.7187 1.2278 11 6 7.4649 -2.9367 0.9111 12 6 8.0995 -3.1809 -0.4595 13 6 7.1684 -3.2139 -1.6732 14 6 7.7941 -4.5103 -1.1526 15 6 7.8207 -4.0892 1.8552 16 6 7.2465 -3.7968 3.2439 17 8 7.7609 -2.5506 3.7178 18 6 7.4193 -1.4295 2.9001 19 6 8.0005 -1.6269 1.4976 20 6 3.4649 -0.9494 1.3228 21 7 2.0226 -0.7011 1.1935 22 6 1.1537 -1.1158 2.1673 23 1 0.1313 -1.3539 1.9131 24 6 1.5870 -1.2305 3.4811 25 7 2.5641 -0.4662 3.9209 26 14 0.7831 -2.4695 4.6249 27 1 1.5738 -3.7264 4.6275 28 1 0.7334 -1.9131 6.0009 29 1 -0.5969 -2.7536 4.1557 30 1 -0.3634 -1.0276 0.0051 31 1 -0.3633 0.5182 0.8874 32 1 -0.3633 0.5095 -0.8925 33 1 1.7659 -0.1640 -2.1370 34 1 1.6028 -1.7236 -1.2936 35 1 4.0061 0.1487 -1.0992 36 1 3.9378 -1.3421 -2.0687 37 1 5.9808 -1.1474 -0.3170 38 1 9.0938 -2.7571 -0.5995 39 1 6.1038 -3.0620 -1.4952 40 1 7.5505 -2.8122 -2.6118 41 1 8.5876 -4.9610 -1.7487 42 1 7.1415 -5.2111 -0.6319 43 1 7.3955 -5.0174 1.4733 44 1 8.9045 -4.1843 1.9218 45 1 7.5330 -4.5931 3.9308 46 1 6.1595 -3.7422 3.1839 47 1 7.8304 -0.5206 3.3394 48 1 6.3347 -1.3437 2.8353 49 1 9.0880 -1.6721 1.5570 50 1 7.7049 -0.7942 0.8593 51 1 3.6517 -1.5758 2.1951 52 1 3.9902 -0.0007 1.4325 53 1 2.8666 -0.5460 4.8390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071705845.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:55 Heat of formation + Delta-G solvation = -59.782480 kcal Electronic energy + Delta-G solvation = -32607.416914 eV Core-core repulsion = 28672.318344 eV Total energy + Delta-G solvation = -3935.098570 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.29686 -39.92297 -38.91245 -37.94280 -36.07683 -34.68755 -34.07414 -32.44957 -31.90309 -31.67031 -27.94426 -27.16705 -26.46669 -24.78631 -24.24745 -23.57285 -22.91475 -22.03913 -21.92823 -21.15748 -20.07807 -18.40607 -17.92827 -17.50809 -17.32589 -17.04432 -16.59982 -16.44580 -15.89174 -15.79889 -15.72929 -15.40610 -15.11454 -14.76977 -14.69767 -14.59372 -14.26617 -14.10960 -13.58679 -13.42144 -13.23872 -13.20346 -12.92606 -12.79133 -12.78420 -12.61795 -12.46167 -12.28993 -12.20374 -12.14487 -12.03688 -11.98235 -11.69561 -11.52874 -11.45166 -11.34510 -11.14129 -10.95102 -10.61598 -10.52521 -10.39215 -9.99993 -8.71873 -7.94264 -5.29041 1.33755 1.41210 1.45363 1.65022 2.17029 2.46340 2.77379 2.86498 3.19354 3.41167 3.58798 3.67174 3.67547 3.87116 3.94834 3.99834 4.06593 4.09313 4.16231 4.22862 4.25326 4.31207 4.36549 4.53085 4.56916 4.60869 4.67482 4.69259 4.69810 4.76692 4.79165 4.85923 4.87666 4.98625 4.99311 5.01794 5.04384 5.06010 5.12428 5.16892 5.23267 5.27130 5.28898 5.32720 5.39972 5.52394 5.57787 5.69996 5.72986 6.14402 6.33985 6.61989 7.09798 7.33280 7.86302 8.36156 9.10223 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011193 B = 0.005073 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.064473 B = 5518.627162 C = 7060.253981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.022 0.978 4 C -0.118 4.118 5 C -0.106 4.106 6 C 0.133 3.867 7 H 0.049 0.951 8 N -0.705 5.705 9 C 0.520 3.480 10 O -0.583 6.583 11 C -0.046 4.046 12 C -0.132 4.132 13 C -0.190 4.190 14 C -0.178 4.178 15 C -0.117 4.117 16 C 0.048 3.952 17 O -0.395 6.395 18 C 0.050 3.950 19 C -0.129 4.129 20 C 0.187 3.813 21 N -0.600 5.600 22 C -0.256 4.256 23 H 0.073 0.927 24 C -0.041 4.041 25 N -0.917 5.917 26 Si 0.934 3.066 27 H -0.304 1.304 28 H -0.293 1.293 29 H -0.260 1.260 30 H 0.044 0.956 31 H 0.036 0.964 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.411 0.589 38 H 0.149 0.851 39 H 0.082 0.918 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.024 0.976 47 H 0.113 0.887 48 H 0.012 0.988 49 H 0.114 0.886 50 H 0.097 0.903 51 H 0.023 0.977 52 H 0.001 0.999 53 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.750 -1.446 -14.950 21.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 H 0.040 0.960 4 C -0.157 4.157 5 C -0.144 4.144 6 C 0.027 3.973 7 H 0.067 0.933 8 N -0.357 5.357 9 C 0.308 3.692 10 O -0.463 6.463 11 C -0.049 4.049 12 C -0.150 4.150 13 C -0.227 4.227 14 C -0.215 4.215 15 C -0.155 4.155 16 C -0.029 4.029 17 O -0.314 6.314 18 C -0.027 4.027 19 C -0.166 4.166 20 C 0.059 3.941 21 N -0.324 5.324 22 C -0.386 4.386 23 H 0.091 0.909 24 C -0.238 4.238 25 N -0.562 5.562 26 Si 0.764 3.236 27 H -0.232 1.232 28 H -0.220 1.220 29 H -0.184 1.184 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.248 0.752 38 H 0.166 0.834 39 H 0.100 0.900 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.042 0.958 47 H 0.131 0.869 48 H 0.031 0.969 49 H 0.132 0.868 50 H 0.115 0.885 51 H 0.042 0.958 52 H 0.019 0.981 53 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 14.358 -1.995 -14.302 20.364 hybrid contribution -0.830 -0.508 1.284 1.611 sum 13.528 -2.503 -13.019 18.941 Atomic orbital electron populations 1.21725 0.94881 1.01051 1.00979 1.20804 0.94243 0.93383 0.86735 0.95988 1.21944 0.94716 1.00794 0.98236 1.21638 0.96945 0.99998 0.95830 1.21429 0.79670 0.98868 0.97330 0.93310 1.46007 1.07237 1.27162 1.55297 1.21001 0.91253 0.80849 0.76115 1.90690 1.65067 1.41047 1.49481 1.20524 0.89199 0.98160 0.97001 1.22253 1.01151 1.02642 0.88950 1.23419 0.98879 1.01858 0.98573 1.23003 1.03872 0.90842 1.03786 1.21959 1.02637 0.97589 0.93336 1.22749 0.97145 0.86286 0.96686 1.87847 1.76078 1.15964 1.51547 1.22718 0.97754 0.89813 0.92394 1.22259 1.03313 0.95756 0.95318 1.20653 0.83959 0.94943 0.94524 1.44334 1.02450 1.65588 1.20023 1.19365 0.95209 1.37112 0.86884 0.90949 1.25514 0.99929 1.00302 0.98005 1.70266 1.33203 1.37391 1.15362 0.85731 0.79004 0.80025 0.78842 1.23186 1.21952 1.18431 0.93663 0.94517 0.90232 0.88546 0.93070 0.90718 0.89513 0.75154 0.83381 0.89974 0.85868 0.86160 0.91209 0.90990 0.87671 0.87765 0.95766 0.86897 0.96937 0.86757 0.88467 0.95816 0.98142 0.94685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 7.94 71.98 0.57 -4.10 16 2 C 0.15 6.04 3.50 44.97 0.16 6.20 16 3 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 4 C -0.12 -3.57 5.37 30.67 0.16 -3.40 16 5 C -0.11 -2.99 5.35 30.62 0.16 -2.83 16 6 C 0.13 5.01 2.64 45.07 0.12 5.13 16 7 H 0.05 2.19 7.51 -2.38 -0.02 2.17 16 8 N -0.71 -21.44 3.26 -442.17 -1.44 -22.89 16 9 C 0.52 17.49 3.49 87.66 0.31 17.79 16 10 O -0.58 -26.18 13.83 -3.03 -0.04 -26.22 16 11 C -0.05 -1.10 0.51 -52.81 -0.03 -1.13 16 12 C -0.13 -2.20 5.24 -10.79 -0.06 -2.26 16 13 C -0.19 -3.32 9.22 30.62 0.28 -3.04 16 14 C -0.18 -3.21 9.61 30.62 0.29 -2.91 16 15 C -0.12 -3.04 4.28 30.68 0.13 -2.91 16 16 C 0.05 1.59 6.56 72.01 0.47 2.06 16 17 O -0.40 -13.37 10.77 -148.98 -1.60 -14.97 16 18 C 0.05 1.52 6.62 72.01 0.48 1.99 16 19 C -0.13 -2.72 4.75 30.69 0.15 -2.57 16 20 C 0.19 9.15 5.00 86.36 0.43 9.58 16 21 N -0.60 -30.19 2.98 -675.24 -2.02 -32.21 16 22 C -0.26 -14.45 8.53 84.03 0.72 -13.74 16 23 H 0.07 3.99 6.26 -2.91 -0.02 3.98 16 24 C -0.04 -2.41 4.57 84.86 0.39 -2.02 16 25 N -0.92 -57.31 12.00 21.65 0.26 -57.05 16 26 Si 0.93 48.56 29.64 68.60 2.03 50.59 16 27 H -0.30 -16.48 7.11 99.48 0.71 -15.78 16 28 H -0.29 -15.07 7.11 99.48 0.71 -14.36 16 29 H -0.26 -12.62 7.11 99.48 0.71 -11.92 16 30 H 0.04 1.69 7.41 -2.39 -0.02 1.67 16 31 H 0.04 1.48 7.65 -2.39 -0.02 1.46 16 32 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 36 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.41 9.38 7.37 -92.71 -0.68 8.70 16 38 H 0.15 1.56 8.07 -2.39 -0.02 1.54 16 39 H 0.08 1.91 5.47 -2.39 -0.01 1.90 16 40 H 0.12 1.49 8.14 -2.38 -0.02 1.48 16 41 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.07 1.66 7.32 -2.39 -0.02 1.65 16 43 H 0.07 2.00 6.89 -2.39 -0.02 1.98 16 44 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 46 H 0.02 1.03 6.12 -2.39 -0.01 1.02 16 47 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 48 H 0.01 0.49 7.38 -2.39 -0.02 0.47 16 49 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 50 H 0.10 1.68 7.18 -2.38 -0.02 1.66 16 51 H 0.02 1.40 6.43 -2.39 -0.02 1.39 16 52 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 53 H 0.24 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -77.70 392.20 2.14 -75.57 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: 0.21 Total: 25.32 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 4.74 Total: 1.85 kcal Atomic # 7 Polarization: -108.94 SS G_CDS: -3.20 Total: -112.14 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -1.65 Total: -41.19 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 2.03 Total: 50.59 kcal Total: -77.70 2.14 -75.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071705845.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.783 kcal (2) G-P(sol) polarization free energy of solvation -77.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds