Wall clock time and date at job start Tue Mar 31 2020 20:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.58724 * 2 1 4 4 C 1.53192 * 109.58356 * 120.28002 * 2 1 3 5 5 C 1.53042 * 109.31450 * 174.42092 * 4 2 1 6 6 C 1.53039 * 109.53973 * 298.64058 * 5 4 2 7 7 H 1.09006 * 109.49206 * 301.37754 * 6 5 4 8 8 N 1.46492 * 109.50008 * 181.31438 * 6 5 4 9 9 C 1.34779 * 120.00107 * 154.99549 * 8 6 5 10 10 O 1.21275 * 119.99972 * 5.12777 * 9 8 6 11 11 C 1.50698 * 119.99939 * 185.12130 * 9 8 6 12 12 C 1.53005 * 109.54515 * 292.62675 * 11 9 8 13 13 C 1.53000 * 117.49715 * 2.21631 * 12 11 9 14 14 C 1.52998 * 117.49502 * 293.59668 * 12 11 9 15 15 C 1.53176 * 109.54292 * 172.35961 * 11 9 8 16 16 C 1.53095 * 109.16320 * 297.11201 * 15 11 9 17 17 O 1.42901 * 109.41713 * 302.39219 * 16 15 11 18 18 C 1.42903 * 114.09479 * 61.15404 * 17 16 15 19 19 C 1.53095 * 109.41850 * 298.84223 * 18 17 16 20 20 C 1.53189 * 109.31389 * 61.35694 * 6 5 4 21 21 N 1.46923 * 108.77886 * 305.36716 * 20 6 5 22 22 C 1.36936 * 120.63422 * 233.58520 * 21 20 6 23 23 H 1.07994 * 120.00018 * 141.47652 * 22 21 20 24 24 C 1.38808 * 119.99952 * 321.47593 * 22 21 20 25 25 N 1.31624 * 120.00152 * 350.91553 * 24 22 21 26 26 Si 1.86803 * 120.00051 * 170.90934 * 24 22 21 27 27 H 1.48503 * 109.46812 * 60.00300 * 26 24 22 28 28 H 1.48499 * 109.47050 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47333 * 300.00397 * 26 24 22 30 30 H 1.09003 * 109.47228 * 299.72084 * 1 2 3 31 31 H 1.09000 * 109.47253 * 59.71665 * 1 2 3 32 32 H 1.08995 * 109.47451 * 179.71818 * 1 2 3 33 33 H 1.08999 * 109.49901 * 54.47315 * 4 2 1 34 34 H 1.08996 * 109.50299 * 294.37350 * 4 2 1 35 35 H 1.08994 * 109.46258 * 178.61110 * 5 4 2 36 36 H 1.09007 * 109.44890 * 58.64926 * 5 4 2 37 37 H 0.97001 * 120.00420 * 334.99602 * 8 6 5 38 38 H 1.08996 * 115.55034 * 147.92616 * 12 11 9 39 39 H 1.08997 * 117.49646 * 0.02562 * 13 12 11 40 40 H 1.08996 * 117.49376 * 145.01918 * 13 12 11 41 41 H 1.09004 * 117.49927 * 214.97636 * 14 12 11 42 42 H 1.08998 * 117.50365 * 0.02562 * 14 12 11 43 43 H 1.08997 * 109.52641 * 57.01907 * 15 11 9 44 44 H 1.09007 * 109.52336 * 177.20736 * 15 11 9 45 45 H 1.09001 * 109.47849 * 182.40404 * 16 15 11 46 46 H 1.08998 * 109.47438 * 62.37348 * 16 15 11 47 47 H 1.09000 * 109.47786 * 178.86065 * 18 17 16 48 48 H 1.08997 * 109.49002 * 58.83684 * 18 17 16 49 49 H 1.08995 * 109.51701 * 297.70509 * 19 18 17 50 50 H 1.08992 * 109.57292 * 177.54789 * 19 18 17 51 51 H 1.09001 * 109.58975 * 65.15940 * 20 6 5 52 52 H 1.09004 * 109.58508 * 185.57963 * 20 6 5 53 53 H 0.97000 * 120.00109 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7278 1.2464 5 6 3.5674 -0.8465 1.1714 6 6 3.9569 -1.6658 -0.0612 7 1 3.4987 -2.6531 -0.0014 8 7 5.4141 -1.8055 -0.1150 9 6 5.9675 -2.8493 -0.7638 10 8 5.2648 -3.6210 -1.3813 11 6 7.4595 -3.0571 -0.7219 12 6 8.1554 -1.9259 -1.4817 13 6 7.2736 -0.8212 -2.0673 14 6 7.9303 -1.8471 -2.9930 15 6 7.8079 -4.4013 -1.3685 16 6 7.1703 -5.5306 -0.5549 17 8 7.6311 -5.4615 0.7960 18 6 7.2927 -4.2457 1.4664 19 6 7.9353 -3.0648 0.7340 20 6 3.4650 -0.9487 -1.3224 21 7 2.0225 -0.7012 -1.1935 22 6 1.1537 -1.1155 -2.1675 23 1 0.1880 -1.5149 -1.8953 24 6 1.5143 -1.0222 -3.5047 25 7 2.6082 -0.3755 -3.8477 26 14 0.4472 -1.8145 -4.8173 27 1 -0.9146 -1.2240 -4.7710 28 1 1.0459 -1.5723 -6.1546 29 1 0.3617 -3.2762 -4.5700 30 1 -0.3634 0.5095 0.8925 31 1 -0.3634 0.5182 -0.8874 32 1 -0.3634 -1.0276 -0.0051 33 1 1.6028 -1.7236 1.2936 34 1 1.7659 -0.1641 2.1371 35 1 3.9376 -1.3421 2.0688 36 1 4.0059 0.1488 1.0991 37 1 5.9808 -1.1469 0.3163 38 1 9.1367 -1.6396 -1.1034 39 1 6.1978 -0.9001 -1.9108 40 1 7.6747 0.1923 -2.0740 41 1 8.7635 -1.5085 -3.6090 42 1 7.2862 -2.6008 -3.4460 43 1 7.4239 -4.4254 -2.3883 44 1 8.8904 -4.5290 -1.3828 45 1 7.4502 -6.4919 -0.9858 46 1 6.0856 -5.4251 -0.5749 47 1 7.6608 -4.2814 2.4917 48 1 6.2096 -4.1234 1.4731 49 1 9.0202 -3.1656 0.7623 50 1 7.6433 -2.1327 1.2176 51 1 3.9903 0.0001 -1.4316 52 1 3.6518 -1.5747 -2.1950 53 1 2.8604 -0.3106 -4.7821 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071705846.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:59 Heat of formation + Delta-G solvation = -62.675541 kcal Electronic energy + Delta-G solvation = -32441.224358 eV Core-core repulsion = 28506.000336 eV Total energy + Delta-G solvation = -3935.224022 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.27512 -39.88640 -38.84038 -37.96773 -36.04569 -34.64024 -34.06831 -32.40179 -31.86863 -31.59418 -27.89533 -27.16388 -26.42916 -24.75315 -24.21105 -23.49969 -22.97650 -22.06680 -21.89501 -21.14465 -20.06342 -18.34630 -17.95070 -17.39996 -17.26237 -16.98001 -16.80055 -16.34352 -15.93550 -15.69351 -15.50638 -15.34429 -15.07587 -14.94493 -14.71697 -14.40228 -14.24287 -14.11591 -13.51431 -13.36227 -13.29223 -13.02855 -12.87757 -12.78077 -12.71502 -12.61054 -12.46028 -12.39200 -12.20154 -12.15121 -12.01803 -11.97620 -11.66321 -11.49384 -11.45256 -11.31858 -11.12446 -10.96547 -10.59119 -10.56698 -10.37074 -9.94249 -8.49644 -7.86476 -5.44194 1.37634 1.41729 1.46211 1.68545 2.18660 2.47124 2.73769 2.91843 3.29183 3.42593 3.61395 3.68923 3.73176 3.89628 3.98667 4.01685 4.07943 4.08640 4.14509 4.25336 4.26546 4.33117 4.38648 4.54919 4.61136 4.65456 4.66372 4.71435 4.75442 4.78054 4.79898 4.88588 4.89266 5.00539 5.02593 5.04725 5.05913 5.06253 5.16047 5.18966 5.22905 5.24086 5.30208 5.37467 5.49662 5.55366 5.59036 5.69787 5.78619 6.19967 6.44536 6.65234 7.17297 7.36607 7.87285 8.41460 9.16416 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012139 B = 0.004376 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.993558 B = 6397.329621 C = 7275.338155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.154 3.846 3 H 0.020 0.980 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.133 3.867 7 H 0.045 0.955 8 N -0.705 5.705 9 C 0.519 3.481 10 O -0.582 6.582 11 C -0.046 4.046 12 C -0.118 4.118 13 C -0.202 4.202 14 C -0.183 4.183 15 C -0.123 4.123 16 C 0.054 3.946 17 O -0.392 6.392 18 C 0.051 3.949 19 C -0.132 4.132 20 C 0.193 3.807 21 N -0.602 5.602 22 C -0.257 4.257 23 H 0.063 0.937 24 C -0.042 4.042 25 N -0.927 5.927 26 Si 0.954 3.046 27 H -0.267 1.267 28 H -0.295 1.295 29 H -0.286 1.286 30 H 0.077 0.923 31 H 0.035 0.965 32 H 0.043 0.957 33 H 0.049 0.951 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.410 0.590 38 H 0.153 0.847 39 H 0.076 0.924 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.035 0.965 47 H 0.125 0.875 48 H 0.026 0.974 49 H 0.110 0.890 50 H 0.100 0.900 51 H -0.002 1.002 52 H 0.027 0.973 53 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.463 -1.360 13.654 19.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.049 3.951 3 H 0.037 0.963 4 C -0.157 4.157 5 C -0.145 4.145 6 C 0.026 3.974 7 H 0.063 0.937 8 N -0.357 5.357 9 C 0.306 3.694 10 O -0.462 6.462 11 C -0.049 4.049 12 C -0.136 4.136 13 C -0.239 4.239 14 C -0.220 4.220 15 C -0.161 4.161 16 C -0.023 4.023 17 O -0.311 6.311 18 C -0.025 4.025 19 C -0.169 4.169 20 C 0.066 3.934 21 N -0.326 5.326 22 C -0.387 4.387 23 H 0.080 0.920 24 C -0.238 4.238 25 N -0.571 5.571 26 Si 0.782 3.218 27 H -0.192 1.192 28 H -0.221 1.221 29 H -0.213 1.213 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.247 0.753 38 H 0.171 0.829 39 H 0.094 0.906 40 H 0.132 0.868 41 H 0.136 0.864 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.054 0.946 47 H 0.143 0.857 48 H 0.045 0.955 49 H 0.129 0.871 50 H 0.118 0.882 51 H 0.016 0.984 52 H 0.045 0.955 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 14.084 -2.015 13.170 19.387 hybrid contribution -0.950 0.081 -1.783 2.022 sum 13.134 -1.934 11.387 17.491 Atomic orbital electron populations 1.21694 0.94927 1.00937 1.00839 1.20801 0.94180 0.93293 0.86863 0.96250 1.21948 0.94757 1.00710 0.98313 1.21643 0.96930 0.99985 0.95934 1.21478 0.79614 0.98663 0.97612 0.93699 1.46006 1.07212 1.26848 1.55593 1.21010 0.91109 0.80008 0.77231 1.90700 1.65046 1.47250 1.43159 1.20538 0.89075 0.96532 0.98749 1.22341 1.00984 0.96081 0.94215 1.23377 0.99132 0.96165 1.05230 1.22939 1.03523 1.02149 0.93393 1.21979 1.02433 0.92480 0.99185 1.22691 0.97835 0.99646 0.82133 1.87866 1.78966 1.38802 1.25492 1.22787 0.98022 0.84070 0.97669 1.22292 1.03466 1.00092 0.91086 1.20605 0.83940 0.94651 0.94195 1.44204 1.02400 1.65546 1.20454 1.19222 0.99285 1.34403 0.85834 0.91973 1.26013 0.98864 0.99143 0.99783 1.70108 1.26612 1.44487 1.15927 0.85559 0.79250 0.78346 0.78626 1.19206 1.22086 1.21251 0.90400 0.94543 0.93796 0.93180 0.88675 0.89522 0.90860 0.75251 0.82905 0.90551 0.86821 0.86388 0.91897 0.92204 0.87934 0.87774 0.94649 0.85722 0.95523 0.87124 0.88175 0.98419 0.95482 0.94574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 8.04 71.98 0.58 -4.10 16 2 C 0.15 6.19 3.50 44.97 0.16 6.35 16 3 H 0.02 0.81 8.14 -2.39 -0.02 0.80 16 4 C -0.12 -3.67 5.37 30.67 0.16 -3.50 16 5 C -0.11 -3.09 5.35 30.62 0.16 -2.93 16 6 C 0.13 5.06 2.57 45.07 0.12 5.18 16 7 H 0.04 2.03 7.66 -2.38 -0.02 2.01 16 8 N -0.70 -21.74 3.29 -442.18 -1.45 -23.20 16 9 C 0.52 17.51 3.51 87.66 0.31 17.82 16 10 O -0.58 -26.39 13.87 -3.02 -0.04 -26.43 16 11 C -0.05 -1.09 0.51 -52.81 -0.03 -1.12 16 12 C -0.12 -2.46 5.26 -10.79 -0.06 -2.52 16 13 C -0.20 -5.53 9.18 30.59 0.28 -5.25 16 14 C -0.18 -4.82 9.61 30.59 0.29 -4.53 16 15 C -0.12 -3.09 4.27 30.68 0.13 -2.96 16 16 C 0.05 1.47 6.56 72.01 0.47 1.94 16 17 O -0.39 -9.99 10.77 -148.98 -1.60 -11.59 16 18 C 0.05 1.04 6.62 72.01 0.48 1.52 16 19 C -0.13 -2.18 4.75 30.69 0.15 -2.03 16 20 C 0.19 9.60 4.38 86.36 0.38 9.97 16 21 N -0.60 -30.68 2.94 -675.26 -1.98 -32.67 16 22 C -0.26 -14.58 8.31 84.03 0.70 -13.88 16 23 H 0.06 3.46 6.50 -2.91 -0.02 3.44 16 24 C -0.04 -2.45 5.05 84.86 0.43 -2.02 16 25 N -0.93 -57.51 11.53 21.65 0.25 -57.26 16 26 Si 0.95 47.78 29.56 68.60 2.03 49.81 16 27 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 28 H -0.29 -14.82 7.11 99.48 0.71 -14.12 16 29 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 30 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.04 1.50 7.71 -2.39 -0.02 1.48 16 32 H 0.04 1.67 7.37 -2.39 -0.02 1.65 16 33 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.41 9.62 7.39 -92.71 -0.69 8.93 16 38 H 0.15 2.04 8.06 -2.39 -0.02 2.02 16 39 H 0.08 2.79 5.05 -2.39 -0.01 2.77 16 40 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.12 2.48 8.14 -2.38 -0.02 2.46 16 42 H 0.06 2.10 7.27 -2.39 -0.02 2.08 16 43 H 0.06 1.79 6.86 -2.39 -0.02 1.78 16 44 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 45 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 46 H 0.04 1.23 6.09 -2.39 -0.01 1.22 16 47 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 48 H 0.03 0.67 7.38 -2.39 -0.02 0.65 16 49 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.10 1.25 7.22 -2.39 -0.02 1.23 16 51 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 52 H 0.03 1.63 6.63 -2.39 -0.02 1.61 16 53 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -76.80 391.45 2.11 -74.69 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.21 Total: 28.68 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 4.71 Total: -2.05 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -3.19 Total: -113.12 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -1.65 Total: -38.02 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.81 kcal Total: -76.80 2.11 -74.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071705846.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.018 kcal (2) G-P(sol) polarization free energy of solvation -76.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds