Wall clock time and date at job start Tue Mar 31 2020 20:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.58840 * 2 1 4 4 C 1.53189 * 109.59029 * 120.43475 * 2 1 3 5 5 C 1.53033 * 109.31454 * 174.41943 * 4 2 1 6 6 C 1.53033 * 109.54099 * 298.63026 * 5 4 2 7 7 H 1.08993 * 109.50510 * 181.31808 * 6 5 4 8 8 N 1.46504 * 109.52254 * 301.40405 * 6 5 4 9 9 C 1.34778 * 119.99637 * 204.85409 * 8 6 5 10 10 O 1.21280 * 120.00271 * 359.97438 * 9 8 6 11 11 C 1.50703 * 119.99855 * 179.97438 * 9 8 6 12 12 C 1.53866 * 113.60272 * 277.57728 * 11 9 8 13 13 C 1.53306 * 86.94934 * 220.33780 * 12 11 9 14 14 C 1.53326 * 87.54995 * 25.17736 * 13 12 11 15 15 C 1.52825 * 113.64516 * 139.94386 * 13 12 11 16 16 C 1.53269 * 108.88071 * 184.13610 * 15 13 12 17 17 O 1.42894 * 109.33013 * 304.69747 * 16 15 13 18 18 C 1.42897 * 114.35973 * 62.98829 * 17 16 15 19 19 C 1.52828 * 113.63988 * 270.41049 * 13 12 11 20 20 C 1.53194 * 109.31159 * 61.36235 * 6 5 4 21 21 N 1.46922 * 108.77670 * 305.37105 * 20 6 5 22 22 C 1.36945 * 120.62809 * 233.62653 * 21 20 6 23 23 H 1.07999 * 119.99514 * 150.85885 * 22 21 20 24 24 C 1.38809 * 120.00118 * 330.85692 * 22 21 20 25 25 N 1.31617 * 119.99994 * 160.77145 * 24 22 21 26 26 Si 1.86804 * 120.00052 * 340.77149 * 24 22 21 27 27 H 1.48507 * 109.46973 * 92.28761 * 26 24 22 28 28 H 1.48496 * 109.47258 * 212.29087 * 26 24 22 29 29 H 1.48493 * 109.47017 * 332.29100 * 26 24 22 30 30 H 1.08991 * 109.47471 * 180.28464 * 1 2 3 31 31 H 1.09003 * 109.46560 * 300.28311 * 1 2 3 32 32 H 1.08993 * 109.47037 * 60.27581 * 1 2 3 33 33 H 1.09005 * 109.49018 * 294.36822 * 4 2 1 34 34 H 1.08993 * 109.49925 * 54.46057 * 4 2 1 35 35 H 1.09007 * 109.45995 * 178.61049 * 5 4 2 36 36 H 1.08994 * 109.46324 * 58.65210 * 5 4 2 37 37 H 0.96997 * 120.00364 * 24.84834 * 8 6 5 38 38 H 1.09002 * 112.84304 * 48.84049 * 11 9 8 39 39 H 1.09006 * 113.63632 * 334.85615 * 12 11 9 40 40 H 1.09007 * 113.63673 * 105.81946 * 12 11 9 41 41 H 1.09004 * 113.63709 * 220.30380 * 14 13 12 42 42 H 1.09005 * 113.71539 * 89.34501 * 14 13 12 43 43 H 1.09002 * 109.57526 * 303.95794 * 15 13 12 44 44 H 1.09005 * 109.56847 * 64.32387 * 15 13 12 45 45 H 1.08995 * 109.49206 * 184.73503 * 16 15 13 46 46 H 1.09007 * 109.48997 * 64.64844 * 16 15 13 47 47 H 1.09004 * 109.49185 * 177.05498 * 18 17 16 48 48 H 1.09000 * 109.49724 * 56.96918 * 18 17 16 49 49 H 1.09004 * 109.56892 * 295.67631 * 19 13 12 50 50 H 1.08994 * 109.57264 * 55.91579 * 19 13 12 51 51 H 1.08997 * 109.58982 * 185.57592 * 20 6 5 52 52 H 1.09008 * 109.58355 * 65.15802 * 20 6 5 53 53 H 0.96997 * 119.99831 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0270 0.0000 4 6 2.0437 -0.7311 1.2444 5 6 3.5675 -0.8496 1.1688 6 6 3.9569 -1.6657 -0.0658 7 1 5.0411 -1.7696 -0.1062 8 7 3.3410 -2.9928 0.0104 9 6 3.8963 -4.0319 -0.6440 10 8 4.9056 -3.8683 -1.2963 11 6 3.2631 -5.3972 -0.5653 12 6 3.6456 -6.1816 0.7020 13 6 3.7416 -7.4220 -0.1938 14 6 4.0170 -6.4730 -1.3662 15 6 4.9202 -8.3336 0.1459 16 6 4.9735 -9.4762 -0.8742 17 8 3.7142 -10.1512 -0.8947 18 6 2.6169 -9.3389 -1.3168 19 6 2.4255 -8.1882 -0.3226 20 6 3.4649 -0.9453 -1.3251 21 7 2.0225 -0.6980 -1.1954 22 6 1.1535 -1.1107 -2.1701 23 1 0.1364 -1.3673 -1.9131 24 6 1.5799 -1.1990 -3.4881 25 7 0.9070 -1.9318 -4.3497 26 14 3.1089 -0.2779 -4.0388 27 1 4.2941 -1.1631 -3.9077 28 1 2.9541 0.1352 -5.4567 29 1 3.2941 0.9262 -3.1898 30 1 -0.3634 -1.0275 0.0051 31 1 -0.3632 0.5183 0.8875 32 1 -0.3633 0.5095 -0.8924 33 1 1.7662 -0.1696 2.1365 34 1 1.6030 -1.7270 1.2890 35 1 3.9379 -1.3476 2.0650 36 1 4.0062 0.1457 1.0993 37 1 2.5336 -3.1236 0.5318 38 1 2.1910 -5.3784 -0.7615 39 1 4.6001 -5.8782 1.1323 40 1 2.8454 -6.2364 1.4402 41 1 3.5153 -6.7622 -2.2897 42 1 5.0742 -6.2498 -1.5105 43 1 5.8477 -7.7625 0.1032 44 1 4.7878 -8.7439 1.1470 45 1 5.7582 -10.1785 -0.5930 46 1 5.1850 -9.0708 -1.8638 47 1 1.7102 -9.9428 -1.3531 48 1 2.8243 -8.9333 -2.3070 49 1 2.1401 -8.5896 0.6499 50 1 1.6462 -7.5172 -0.6835 51 1 3.6517 -1.5689 -2.1993 52 1 3.9903 0.0038 -1.4318 53 1 1.2052 -1.9938 -5.2706 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071990071.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:29 Heat of formation + Delta-G solvation = -71.179211 kcal Electronic energy + Delta-G solvation = -31531.464195 eV Core-core repulsion = 27595.871426 eV Total energy + Delta-G solvation = -3935.592769 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.01746 -40.69004 -39.33105 -37.91622 -35.82487 -34.50756 -32.69576 -32.55659 -32.13333 -31.63845 -28.08269 -27.00918 -26.80240 -25.91065 -24.67232 -24.35750 -23.27984 -22.02969 -21.22852 -20.50253 -19.20116 -18.47859 -18.32157 -17.37391 -17.01899 -16.94491 -16.73312 -16.45721 -16.16259 -15.80935 -15.62531 -15.35253 -15.16445 -14.85403 -14.76844 -14.58853 -14.30493 -14.11692 -13.87239 -13.55697 -13.44287 -13.25293 -13.12925 -12.78183 -12.63985 -12.55497 -12.52814 -12.38926 -12.22980 -12.19801 -12.04770 -11.81953 -11.66528 -11.46870 -11.38202 -11.32964 -11.13645 -11.01854 -10.72407 -10.64069 -10.28389 -9.96751 -8.81013 -8.15925 -5.44174 1.25609 1.30434 1.36649 1.70680 2.38370 2.40646 2.97681 3.06376 3.31640 3.38125 3.51661 3.56909 3.68822 3.86497 3.99975 4.01745 4.11702 4.12003 4.18352 4.27939 4.32870 4.40025 4.50699 4.53712 4.54639 4.57256 4.66290 4.73248 4.76095 4.78595 4.79789 4.81953 4.86450 4.91479 4.96844 4.99358 5.02743 5.08255 5.10151 5.11985 5.18247 5.19895 5.27905 5.38028 5.46949 5.52685 5.62334 5.67259 5.92959 6.19613 6.28039 6.69544 6.95538 7.38597 7.67643 8.08676 9.03351 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013759 B = 0.003571 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.536196 B = 7838.363097 C = 8487.386165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.157 3.843 3 H 0.034 0.966 4 C -0.121 4.121 5 C -0.109 4.109 6 C 0.131 3.869 7 H 0.071 0.929 8 N -0.693 5.693 9 C 0.517 3.483 10 O -0.597 6.597 11 C -0.136 4.136 12 C -0.092 4.092 13 C -0.072 4.072 14 C -0.114 4.114 15 C -0.133 4.133 16 C 0.058 3.942 17 O -0.399 6.399 18 C 0.057 3.943 19 C -0.128 4.128 20 C 0.112 3.888 21 N -0.607 5.607 22 C -0.218 4.218 23 H 0.075 0.925 24 C -0.029 4.029 25 N -0.954 5.954 26 Si 0.923 3.077 27 H -0.304 1.304 28 H -0.315 1.315 29 H -0.259 1.259 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.034 0.966 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.408 0.592 38 H 0.114 0.886 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.108 0.892 46 H 0.043 0.957 47 H 0.108 0.892 48 H 0.043 0.957 49 H 0.089 0.911 50 H 0.078 0.922 51 H 0.035 0.965 52 H 0.028 0.972 53 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.255 -9.881 17.562 20.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.053 3.947 3 H 0.052 0.948 4 C -0.159 4.159 5 C -0.147 4.147 6 C 0.024 3.976 7 H 0.089 0.911 8 N -0.343 5.343 9 C 0.305 3.695 10 O -0.479 6.479 11 C -0.157 4.157 12 C -0.130 4.130 13 C -0.072 4.072 14 C -0.152 4.152 15 C -0.170 4.170 16 C -0.019 4.019 17 O -0.318 6.318 18 C -0.019 4.019 19 C -0.166 4.166 20 C -0.014 4.014 21 N -0.332 5.332 22 C -0.348 4.348 23 H 0.092 0.908 24 C -0.223 4.223 25 N -0.601 5.601 26 Si 0.755 3.245 27 H -0.232 1.232 28 H -0.244 1.244 29 H -0.184 1.184 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.053 0.947 33 H 0.115 0.885 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.246 0.754 38 H 0.132 0.868 39 H 0.103 0.897 40 H 0.118 0.882 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.126 0.874 46 H 0.061 0.939 47 H 0.126 0.874 48 H 0.061 0.939 49 H 0.107 0.893 50 H 0.097 0.903 51 H 0.053 0.947 52 H 0.046 0.954 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.901 -9.941 17.043 20.330 hybrid contribution 0.498 0.998 -1.651 1.992 sum 5.399 -8.943 15.392 18.602 Atomic orbital electron populations 1.21740 0.94703 1.01260 1.01018 1.20851 0.94197 0.93757 0.85920 0.94791 1.21963 0.94765 1.01202 0.98014 1.21677 0.97171 1.00137 0.95705 1.21331 0.96697 0.82966 0.96570 0.91063 1.45804 1.29809 1.07687 1.50986 1.21015 0.83687 0.87362 0.77468 1.90620 1.28140 1.86042 1.43076 1.22787 1.01349 0.89798 1.01786 1.22813 1.02857 0.93003 0.94308 1.21450 0.96488 0.93594 0.95662 1.22874 1.00448 0.94514 0.97341 1.22076 0.97670 0.96732 1.00570 1.22695 0.85918 0.95096 0.98179 1.87849 1.16811 1.38646 1.88491 1.22698 0.90161 0.92859 0.96216 1.21971 0.95716 0.97347 1.01537 1.21668 0.85615 0.96608 0.97502 1.44543 1.01364 1.66327 1.21003 1.18864 0.95234 1.34737 0.85942 0.90782 1.25724 0.99317 1.00565 0.96695 1.69895 1.43235 1.42421 1.04593 0.86277 0.81518 0.80641 0.76065 1.23230 1.24445 1.18377 0.93585 0.90103 0.94692 0.88535 0.91923 0.89113 0.90104 0.75446 0.86758 0.89684 0.88226 0.92242 0.90538 0.90645 0.89755 0.87412 0.93890 0.87358 0.93899 0.89295 0.90346 0.94667 0.95442 0.93651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.16 7.94 71.98 0.57 -3.58 16 2 C 0.16 5.27 3.50 44.97 0.16 5.43 16 3 H 0.03 1.14 8.14 -2.38 -0.02 1.13 16 4 C -0.12 -2.91 5.21 30.67 0.16 -2.75 16 5 C -0.11 -2.63 5.58 30.62 0.17 -2.46 16 6 C 0.13 4.46 2.81 45.07 0.13 4.58 16 7 H 0.07 2.54 7.58 -2.39 -0.02 2.52 16 8 N -0.69 -22.60 4.92 -442.17 -2.17 -24.77 16 9 C 0.52 18.80 7.32 87.66 0.64 19.44 16 10 O -0.60 -27.09 15.56 -3.03 -0.05 -27.13 16 11 C -0.14 -3.81 3.80 -10.96 -0.04 -3.85 16 12 C -0.09 -1.82 6.78 30.99 0.21 -1.61 16 13 C -0.07 -1.44 0.77 -52.09 -0.04 -1.48 16 14 C -0.11 -3.15 6.36 30.99 0.20 -2.96 16 15 C -0.13 -2.36 5.33 30.63 0.16 -2.19 16 16 C 0.06 1.07 6.78 72.07 0.49 1.56 16 17 O -0.40 -8.61 10.72 -148.98 -1.60 -10.20 16 18 C 0.06 1.10 6.78 72.07 0.49 1.59 16 19 C -0.13 -2.31 5.23 30.63 0.16 -2.15 16 20 C 0.11 4.96 3.80 86.36 0.33 5.28 16 21 N -0.61 -26.80 2.67 -675.22 -1.80 -28.60 16 22 C -0.22 -11.73 9.04 84.03 0.76 -10.98 16 23 H 0.07 4.21 6.40 -2.91 -0.02 4.19 16 24 C -0.03 -1.70 5.24 84.86 0.44 -1.26 16 25 N -0.95 -60.71 13.97 21.65 0.30 -60.41 16 26 Si 0.92 49.99 24.34 68.60 1.67 51.66 16 27 H -0.30 -17.15 6.63 99.48 0.66 -16.49 16 28 H -0.32 -17.36 7.11 99.48 0.71 -16.65 16 29 H -0.26 -13.23 6.63 99.48 0.66 -12.57 16 30 H 0.05 1.55 7.44 -2.39 -0.02 1.53 16 31 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.03 1.30 7.62 -2.39 -0.02 1.28 16 33 H 0.10 1.71 8.14 -2.38 -0.02 1.70 16 34 H 0.06 1.51 6.40 -2.39 -0.02 1.49 16 35 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.41 11.37 6.78 -92.71 -0.63 10.74 16 38 H 0.11 3.18 7.65 -2.39 -0.02 3.16 16 39 H 0.08 1.71 8.05 -2.38 -0.02 1.69 16 40 H 0.10 1.51 8.09 -2.38 -0.02 1.49 16 41 H 0.06 1.74 7.63 -2.39 -0.02 1.72 16 42 H 0.08 2.40 7.31 -2.38 -0.02 2.38 16 43 H 0.07 1.35 8.04 -2.39 -0.02 1.33 16 44 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 45 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.04 0.86 8.12 -2.38 -0.02 0.84 16 47 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 48 H 0.04 0.90 7.67 -2.39 -0.02 0.88 16 49 H 0.09 1.37 8.14 -2.38 -0.02 1.36 16 50 H 0.08 1.45 7.35 -2.39 -0.02 1.43 16 51 H 0.04 1.88 4.62 -2.39 -0.01 1.87 16 52 H 0.03 1.21 7.03 -2.38 -0.02 1.20 16 53 H 0.25 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -75.08 390.20 1.51 -73.57 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.17 Total: 23.27 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 4.99 Total: 2.62 kcal Atomic # 7 Polarization: -110.11 SS G_CDS: -3.67 Total: -113.78 kcal Atomic # 8 Polarization: -35.69 SS G_CDS: -1.64 Total: -37.34 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 1.67 Total: 51.66 kcal Total: -75.08 1.51 -73.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071990071.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.387 kcal (2) G-P(sol) polarization free energy of solvation -75.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds