Wall clock time and date at job start Tue Mar 31 2020 20:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.58979 * 2 1 4 4 C 1.53195 * 109.58624 * 239.71170 * 2 1 3 5 5 C 1.53069 * 109.29901 * 185.71949 * 4 2 1 6 6 C 1.53041 * 109.65537 * 61.15588 * 5 4 2 7 7 H 1.08995 * 109.52539 * 58.66898 * 6 5 4 8 8 N 1.46508 * 109.49611 * 178.74858 * 6 5 4 9 9 C 1.34777 * 119.99623 * 204.83749 * 8 6 5 10 10 O 1.21280 * 120.00355 * 0.02562 * 9 8 6 11 11 C 1.50704 * 119.99888 * 180.02562 * 9 8 6 12 12 C 1.53880 * 113.59767 * 279.18145 * 11 9 8 13 13 C 1.53483 * 86.88043 * 220.36297 * 12 11 9 14 14 C 1.53317 * 87.58191 * 25.10876 * 13 12 11 15 15 C 1.52829 * 113.69170 * 139.90230 * 13 12 11 16 16 C 1.53272 * 108.87621 * 184.07260 * 15 13 12 17 17 O 1.42894 * 109.33058 * 304.69330 * 16 15 13 18 18 C 1.42899 * 114.35758 * 62.99448 * 17 16 15 19 19 C 1.52830 * 113.56192 * 270.33526 * 13 12 11 20 20 C 1.53187 * 109.31715 * 298.70005 * 6 5 4 21 21 N 1.46932 * 108.77481 * 54.63415 * 20 6 5 22 22 C 1.36936 * 120.63225 * 126.37172 * 21 20 6 23 23 H 1.07999 * 120.00084 * 209.03588 * 22 21 20 24 24 C 1.38812 * 119.99499 * 29.03238 * 22 21 20 25 25 N 1.31614 * 120.00611 * 15.02195 * 24 22 21 26 26 Si 1.86808 * 119.99614 * 195.02001 * 24 22 21 27 27 H 1.48507 * 109.47019 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.46969 * 119.99979 * 26 24 22 29 29 H 1.48493 * 109.47269 * 240.00401 * 26 24 22 30 30 H 1.09008 * 109.46643 * 300.00058 * 1 2 3 31 31 H 1.09001 * 109.47158 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47146 * 60.00108 * 1 2 3 33 33 H 1.08997 * 109.50025 * 305.53488 * 4 2 1 34 34 H 1.09000 * 109.49299 * 65.63062 * 4 2 1 35 35 H 1.09005 * 109.34675 * 301.13617 * 5 4 2 36 36 H 1.08993 * 109.44517 * 181.23835 * 5 4 2 37 37 H 0.96995 * 120.00233 * 24.84176 * 8 6 5 38 38 H 1.09004 * 112.83688 * 50.32868 * 11 9 8 39 39 H 1.08998 * 113.63793 * 334.84766 * 12 11 9 40 40 H 1.08994 * 113.63658 * 105.82224 * 12 11 9 41 41 H 1.09004 * 113.63725 * 220.37265 * 14 13 12 42 42 H 1.09009 * 113.71531 * 89.41549 * 14 13 12 43 43 H 1.08998 * 109.56911 * 303.89424 * 15 13 12 44 44 H 1.09003 * 109.56770 * 64.25587 * 15 13 12 45 45 H 1.08992 * 109.49408 * 184.73262 * 16 15 13 46 46 H 1.09002 * 109.49313 * 64.65154 * 16 15 13 47 47 H 1.09005 * 109.48782 * 177.05114 * 18 17 16 48 48 H 1.08991 * 109.49808 * 56.96508 * 18 17 16 49 49 H 1.08992 * 109.57363 * 295.67774 * 19 13 12 50 50 H 1.09000 * 109.56848 * 55.92882 * 19 13 12 51 51 H 1.09003 * 109.58838 * 294.85077 * 20 6 5 52 52 H 1.08996 * 109.59509 * 174.42146 * 20 6 5 53 53 H 0.96996 * 120.00327 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7279 -1.2463 5 6 3.5674 -0.8496 -1.1691 6 6 3.9568 -1.6658 0.0655 7 1 3.4986 -2.6531 0.0089 8 7 5.4142 -1.8054 0.1197 9 6 5.9676 -2.8456 0.7740 10 8 5.2592 -3.6664 1.3175 11 6 7.4667 -2.9890 0.8302 12 6 8.0741 -3.6110 -0.4395 13 6 9.0061 -4.3972 0.4928 14 6 7.9377 -4.2460 1.5819 15 6 9.2344 -5.8437 0.0556 16 6 10.0918 -6.5512 1.1109 17 8 11.3002 -5.8150 1.3097 18 6 11.1086 -4.4953 1.8233 19 6 10.3109 -3.6674 0.8096 20 6 3.4651 -0.9455 1.3249 21 7 2.0225 -0.6981 1.1954 22 6 1.1536 -1.1108 2.1700 23 1 0.1360 -1.3658 1.9135 24 6 1.5809 -1.2014 3.4876 25 7 2.7038 -0.6226 3.8566 26 14 0.5618 -2.1448 4.7371 27 1 -0.6464 -2.6980 4.0741 28 1 1.3711 -3.2566 5.2976 29 1 0.1509 -1.2304 5.8325 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 1.6029 -1.7238 -1.2935 34 1 1.7660 -0.1642 -2.1370 35 1 4.0061 0.1458 -1.0995 36 1 3.9375 -1.3477 -2.0652 37 1 5.9808 -1.1492 -0.3153 38 1 7.9674 -2.0754 1.1510 39 1 7.3780 -4.2404 -0.9938 40 1 8.5933 -2.8920 -1.0730 41 1 8.3474 -4.0365 2.5700 42 1 7.2030 -5.0513 1.5901 43 1 8.2751 -6.3530 -0.0367 44 1 9.7512 -5.8579 -0.9040 45 1 10.3313 -7.5582 0.7695 46 1 9.5408 -6.6065 2.0498 47 1 12.0781 -4.0269 1.9931 48 1 10.5595 -4.5470 2.7634 49 1 10.8937 -3.5481 -0.1037 50 1 10.0879 -2.6872 1.2311 51 1 3.9903 0.0037 1.4316 52 1 3.6518 -1.5691 2.1991 53 1 3.0022 -0.6857 4.7774 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071990073.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:37 Heat of formation + Delta-G solvation = -77.679464 kcal Electronic energy + Delta-G solvation = -30675.335929 eV Core-core repulsion = 26739.461287 eV Total energy + Delta-G solvation = -3935.874641 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.98937 -40.47643 -39.24573 -37.93483 -35.95740 -34.66479 -32.63448 -32.12969 -31.84387 -31.54344 -27.90471 -27.08683 -26.92766 -25.67405 -24.64933 -24.02478 -23.18023 -22.01461 -21.27284 -20.62820 -19.18836 -18.34887 -18.21960 -17.36024 -17.01444 -16.94190 -16.69346 -16.35049 -15.86006 -15.68114 -15.59035 -15.32672 -15.09160 -14.83039 -14.76711 -14.57191 -14.19967 -14.08309 -13.58477 -13.49983 -13.12883 -13.10611 -12.82403 -12.74517 -12.72085 -12.57679 -12.52405 -12.28396 -12.20979 -12.11660 -12.10222 -11.97681 -11.66568 -11.47023 -11.40674 -11.31602 -11.14617 -10.99552 -10.61607 -10.56200 -10.27572 -10.01742 -8.63748 -7.86741 -5.32707 1.38073 1.42445 1.50385 1.71060 2.28872 2.49438 2.98632 3.29653 3.37745 3.51400 3.55291 3.67193 3.71182 3.93804 4.01973 4.08780 4.12181 4.17431 4.25387 4.32678 4.38164 4.39727 4.50685 4.55368 4.62193 4.70337 4.73183 4.77121 4.79437 4.80984 4.83073 4.88688 4.92178 4.97921 4.99570 5.05918 5.08705 5.12415 5.17841 5.19182 5.30260 5.34664 5.37625 5.48143 5.52940 5.54538 5.61111 5.68943 5.81601 6.29127 6.40106 6.70457 7.14700 7.41816 7.89086 8.37770 9.18309 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014838 B = 0.002886 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.577865 B = 9699.783373 C =10941.678231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.022 0.978 4 C -0.118 4.118 5 C -0.106 4.106 6 C 0.131 3.869 7 H 0.045 0.955 8 N -0.708 5.708 9 C 0.511 3.489 10 O -0.593 6.593 11 C -0.130 4.130 12 C -0.097 4.097 13 C -0.073 4.073 14 C -0.115 4.115 15 C -0.136 4.136 16 C 0.059 3.941 17 O -0.401 6.401 18 C 0.055 3.945 19 C -0.126 4.126 20 C 0.181 3.819 21 N -0.604 5.604 22 C -0.249 4.249 23 H 0.074 0.926 24 C -0.054 4.054 25 N -0.934 5.934 26 Si 0.955 3.045 27 H -0.263 1.263 28 H -0.301 1.301 29 H -0.287 1.287 30 H 0.038 0.962 31 H 0.044 0.956 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.413 0.587 38 H 0.134 0.866 39 H 0.076 0.924 40 H 0.105 0.895 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.104 0.896 46 H 0.044 0.956 47 H 0.109 0.891 48 H 0.046 0.954 49 H 0.087 0.913 50 H 0.088 0.912 51 H -0.003 1.003 52 H 0.041 0.959 53 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.339 -3.757 -13.655 21.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.040 0.960 4 C -0.158 4.158 5 C -0.144 4.144 6 C 0.024 3.976 7 H 0.064 0.936 8 N -0.359 5.359 9 C 0.299 3.701 10 O -0.473 6.473 11 C -0.151 4.151 12 C -0.135 4.135 13 C -0.073 4.073 14 C -0.153 4.153 15 C -0.174 4.174 16 C -0.017 4.017 17 O -0.320 6.320 18 C -0.021 4.021 19 C -0.164 4.164 20 C 0.054 3.946 21 N -0.328 5.328 22 C -0.380 4.380 23 H 0.092 0.908 24 C -0.249 4.249 25 N -0.580 5.580 26 Si 0.784 3.216 27 H -0.187 1.187 28 H -0.229 1.229 29 H -0.214 1.214 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.249 0.751 38 H 0.152 0.848 39 H 0.095 0.905 40 H 0.123 0.877 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.100 0.900 45 H 0.122 0.878 46 H 0.062 0.938 47 H 0.127 0.873 48 H 0.064 0.936 49 H 0.105 0.895 50 H 0.106 0.894 51 H 0.015 0.985 52 H 0.060 0.940 53 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 16.031 -4.388 -13.177 21.210 hybrid contribution -0.856 -0.071 1.498 1.727 sum 15.174 -4.459 -11.679 19.661 Atomic orbital electron populations 1.21739 0.94798 1.01085 1.01089 1.20809 0.94281 0.93403 0.86747 0.96028 1.21958 0.94748 1.00762 0.98295 1.21635 0.96967 0.99966 0.95859 1.21458 0.79896 0.98710 0.97515 0.93637 1.45930 1.07301 1.27355 1.55269 1.21273 0.91760 0.80320 0.76782 1.90701 1.65189 1.44470 1.46929 1.22862 0.89213 1.01408 1.01647 1.22867 0.97286 0.99041 0.94277 1.21502 0.94133 0.95772 0.95894 1.22875 0.97627 0.96585 0.98228 1.22087 1.00632 0.94650 1.00003 1.22657 0.85682 0.95690 0.97717 1.87855 1.30998 1.27451 1.85676 1.22750 1.01441 0.82531 0.95416 1.21980 0.94193 0.99131 1.01071 1.20762 0.83638 0.95164 0.95080 1.44343 1.02625 1.65753 1.20118 1.19520 0.95155 1.36515 0.86764 0.90800 1.25781 0.99040 1.01136 0.98960 1.70158 1.25046 1.46468 1.16371 0.85373 0.78626 0.78043 0.79539 1.18675 1.22906 1.21400 0.94331 0.93660 0.90199 0.93133 0.88547 0.90851 0.89675 0.75069 0.84837 0.90545 0.87696 0.91264 0.91321 0.91162 0.89954 0.87783 0.93776 0.87256 0.93581 0.89475 0.89365 0.98547 0.94023 0.94705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 7.94 71.98 0.57 -4.13 16 2 C 0.15 6.11 3.49 44.97 0.16 6.26 16 3 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 4 C -0.12 -3.68 5.38 30.68 0.17 -3.52 16 5 C -0.11 -3.12 5.35 30.63 0.16 -2.95 16 6 C 0.13 5.11 2.61 45.07 0.12 5.22 16 7 H 0.05 2.10 7.58 -2.39 -0.02 2.09 16 8 N -0.71 -22.36 5.08 -442.16 -2.25 -24.60 16 9 C 0.51 17.76 7.32 87.66 0.64 18.41 16 10 O -0.59 -27.85 15.57 -3.03 -0.05 -27.90 16 11 C -0.13 -3.03 3.79 -10.96 -0.04 -3.07 16 12 C -0.10 -1.66 6.80 31.05 0.21 -1.45 16 13 C -0.07 -1.25 0.77 -52.03 -0.04 -1.29 16 14 C -0.12 -2.78 6.35 30.99 0.20 -2.58 16 15 C -0.14 -2.27 5.34 30.63 0.16 -2.11 16 16 C 0.06 1.02 6.78 72.07 0.49 1.51 16 17 O -0.40 -7.77 10.72 -148.98 -1.60 -9.37 16 18 C 0.05 0.85 6.78 72.07 0.49 1.34 16 19 C -0.13 -1.72 5.23 30.63 0.16 -1.56 16 20 C 0.18 9.14 4.86 86.36 0.42 9.56 16 21 N -0.60 -30.95 2.99 -675.21 -2.02 -32.97 16 22 C -0.25 -14.14 8.60 84.03 0.72 -13.42 16 23 H 0.07 4.05 6.20 -2.91 -0.02 4.03 16 24 C -0.05 -3.21 4.96 84.86 0.42 -2.79 16 25 N -0.93 -58.54 11.14 21.65 0.24 -58.30 16 26 Si 0.96 48.13 29.58 68.60 2.03 50.16 16 27 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 28 H -0.30 -15.68 7.11 99.48 0.71 -14.97 16 29 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 30 H 0.04 1.54 7.64 -2.38 -0.02 1.52 16 31 H 0.04 1.69 7.43 -2.39 -0.02 1.67 16 32 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.41 9.42 8.60 -92.71 -0.80 8.63 16 38 H 0.13 2.49 7.65 -2.38 -0.02 2.47 16 39 H 0.08 1.50 8.05 -2.39 -0.02 1.48 16 40 H 0.10 1.22 8.09 -2.39 -0.02 1.20 16 41 H 0.07 1.64 7.63 -2.39 -0.02 1.62 16 42 H 0.07 2.06 7.33 -2.38 -0.02 2.04 16 43 H 0.07 1.26 8.04 -2.39 -0.02 1.24 16 44 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.04 0.82 8.12 -2.39 -0.02 0.80 16 47 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 48 H 0.05 0.76 7.67 -2.39 -0.02 0.74 16 49 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.09 1.03 7.35 -2.39 -0.02 1.02 16 51 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 52 H 0.04 2.55 6.06 -2.39 -0.01 2.54 16 53 H 0.24 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -78.17 400.08 1.45 -76.72 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.09 Total: 22.83 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 5.01 Total: 3.43 kcal Atomic # 7 Polarization: -111.84 SS G_CDS: -4.03 Total: -115.87 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -1.64 Total: -37.27 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 2.03 Total: 50.16 kcal Total: -78.17 1.45 -76.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071990073.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.958 kcal (2) G-P(sol) polarization free energy of solvation -78.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds