Wall clock time and date at job start Tue Mar 31 2020 20:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.58471 * 2 1 4 4 C 1.53191 * 109.58995 * 120.28675 * 2 1 3 5 5 C 1.53043 * 109.31221 * 174.56359 * 4 2 1 6 6 C 1.53044 * 109.53888 * 298.63683 * 5 4 2 7 7 H 1.09007 * 109.49345 * 301.38050 * 6 5 4 8 8 N 1.46492 * 109.49775 * 181.31803 * 6 5 4 9 9 C 1.34783 * 119.99923 * 155.05987 * 8 6 5 10 10 O 1.21280 * 120.00040 * 0.02562 * 9 8 6 11 11 C 1.50703 * 119.99584 * 179.97438 * 9 8 6 12 12 C 1.53870 * 113.59881 * 180.02562 * 11 9 8 13 13 C 1.53322 * 87.04123 * 139.70175 * 12 11 9 14 14 C 1.53308 * 87.55252 * 334.77383 * 13 12 11 15 15 C 1.52827 * 113.61096 * 219.97672 * 13 12 11 16 16 C 1.53271 * 108.87934 * 282.21530 * 15 13 12 17 17 O 1.42893 * 109.32805 * 304.69684 * 16 15 13 18 18 C 1.42893 * 114.36439 * 62.99129 * 17 16 15 19 19 C 1.52828 * 113.61323 * 89.57109 * 13 12 11 20 20 C 1.53192 * 109.33914 * 61.34632 * 6 5 4 21 21 N 1.46927 * 108.77271 * 305.41595 * 20 6 5 22 22 C 1.36939 * 120.60461 * 233.53441 * 21 20 6 23 23 H 1.07997 * 120.00377 * 150.20986 * 22 21 20 24 24 C 1.38820 * 119.99926 * 330.20583 * 22 21 20 25 25 N 1.31621 * 119.99846 * 344.45995 * 24 22 21 26 26 Si 1.86797 * 119.99943 * 164.46423 * 24 22 21 27 27 H 1.48496 * 109.47500 * 89.99806 * 26 24 22 28 28 H 1.48503 * 109.46953 * 210.00200 * 26 24 22 29 29 H 1.48497 * 109.47002 * 329.99467 * 26 24 22 30 30 H 1.09005 * 109.47014 * 299.71030 * 1 2 3 31 31 H 1.08995 * 109.47638 * 59.71110 * 1 2 3 32 32 H 1.09003 * 109.47330 * 179.71816 * 1 2 3 33 33 H 1.09008 * 109.49479 * 54.61616 * 4 2 1 34 34 H 1.08989 * 109.52624 * 294.53295 * 4 2 1 35 35 H 1.08996 * 109.45964 * 178.61600 * 5 4 2 36 36 H 1.08997 * 109.46063 * 58.65657 * 5 4 2 37 37 H 0.97004 * 120.00179 * 335.06675 * 8 6 5 38 38 H 1.08999 * 112.90210 * 48.79388 * 11 9 8 39 39 H 1.09003 * 113.63709 * 25.14441 * 12 11 9 40 40 H 1.09006 * 113.63483 * 254.25941 * 12 11 9 41 41 H 1.08995 * 113.63569 * 139.68919 * 14 13 12 42 42 H 1.08996 * 113.63914 * 270.58008 * 14 13 12 43 43 H 1.08995 * 109.57107 * 42.03295 * 15 13 12 44 44 H 1.08995 * 109.56994 * 162.39747 * 15 13 12 45 45 H 1.08998 * 109.49486 * 184.73947 * 16 15 13 46 46 H 1.08996 * 109.49353 * 64.64982 * 16 15 13 47 47 H 1.09007 * 109.49493 * 177.05278 * 18 17 16 48 48 H 1.08996 * 109.52154 * 56.98444 * 18 17 16 49 49 H 1.08997 * 109.57141 * 197.60809 * 19 13 12 50 50 H 1.09001 * 109.57023 * 317.96528 * 19 13 12 51 51 H 1.09001 * 109.58247 * 65.17399 * 20 6 5 52 52 H 1.09006 * 109.58437 * 185.59476 * 20 6 5 53 53 H 0.96994 * 120.00026 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7279 1.2463 5 6 3.5679 -0.8434 1.1727 6 6 3.9604 -1.6607 -0.0602 7 1 3.5042 -2.6490 -0.0018 8 7 5.4180 -1.7974 -0.1125 9 6 5.9743 -2.8387 -0.7628 10 8 5.2681 -3.6623 -1.3049 11 6 7.4738 -2.9790 -0.8170 12 6 7.9488 -4.2180 -1.5959 13 6 9.0545 -3.3298 -2.1783 14 6 8.1356 -2.1300 -1.9205 15 6 9.3278 -3.5851 -3.6601 16 6 10.1661 -4.8609 -3.7971 17 8 11.3514 -4.7349 -3.0090 18 6 11.1152 -4.6051 -1.6057 19 6 10.3324 -3.3143 -1.3404 20 6 3.4683 -0.9442 -1.3216 21 7 2.0253 -0.6990 -1.1937 22 6 1.1585 -1.1139 -2.1692 23 1 0.1444 -1.3821 -1.9121 24 6 1.5831 -1.1896 -3.4887 25 7 2.6933 -0.5869 -3.8583 26 14 0.5790 -2.1469 -4.7395 27 1 -0.4155 -1.2434 -5.3719 28 1 1.4817 -2.6969 -5.7825 29 1 -0.1274 -3.2615 -4.0586 30 1 -0.3633 0.5094 0.8926 31 1 -0.3634 0.5183 -0.8873 32 1 -0.3634 -1.0277 -0.0051 33 1 1.6050 -1.7248 1.2920 34 1 1.7639 -0.1661 2.1374 35 1 3.9382 -1.3391 2.0700 36 1 4.0046 0.1528 1.1020 37 1 5.9828 -1.1386 0.3209 38 1 7.9457 -2.8696 0.1594 39 1 7.2325 -4.5682 -2.3392 40 1 8.3224 -5.0188 -0.9575 41 1 8.6590 -1.2522 -1.5416 42 1 7.4721 -1.9005 -2.7542 43 1 8.3832 -3.7104 -4.1893 44 1 9.8751 -2.7417 -4.0811 45 1 10.4382 -5.0069 -4.8425 46 1 9.5869 -5.7159 -3.4487 47 1 12.0684 -4.5674 -1.0783 48 1 10.5379 -5.4597 -1.2530 49 1 10.9413 -2.4542 -1.6189 50 1 10.0749 -3.2544 -0.2829 51 1 3.9918 0.0058 -1.4299 52 1 3.6574 -1.5694 -2.1943 53 1 2.9899 -0.6395 -4.7803 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071990074.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:42 Heat of formation + Delta-G solvation = -77.935264 kcal Electronic energy + Delta-G solvation = -30827.269952 eV Core-core repulsion = 26891.384218 eV Total energy + Delta-G solvation = -3935.885734 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.99001 -40.48165 -39.24484 -37.93638 -35.95712 -34.66154 -32.63634 -32.13798 -31.84648 -31.55449 -27.91684 -27.07804 -26.94309 -25.67300 -24.65190 -24.01472 -23.19641 -22.03031 -21.26027 -20.63941 -19.20512 -18.37590 -18.20670 -17.34260 -17.02236 -16.93969 -16.62809 -16.36195 -15.89755 -15.78627 -15.46074 -15.32945 -15.07589 -14.98170 -14.77675 -14.43292 -14.24066 -14.12102 -13.58824 -13.52156 -13.13701 -13.10022 -12.84090 -12.73813 -12.71353 -12.56077 -12.52541 -12.30807 -12.22608 -12.15744 -12.09191 -11.99425 -11.67160 -11.45452 -11.41371 -11.33063 -11.15184 -10.99518 -10.61967 -10.55311 -10.27196 -10.02991 -8.62835 -7.87466 -5.33455 1.37741 1.41928 1.49350 1.70498 2.27660 2.49142 2.98848 3.29068 3.37861 3.50271 3.54637 3.68133 3.70750 3.93204 4.00949 4.08600 4.10907 4.18128 4.23727 4.31894 4.36572 4.39015 4.50312 4.55790 4.61628 4.70053 4.71287 4.76083 4.78672 4.80894 4.82364 4.88569 4.91005 4.95957 4.99511 5.05804 5.07790 5.12043 5.17832 5.18924 5.30137 5.33877 5.35816 5.48829 5.53086 5.54882 5.60396 5.68782 5.80301 6.29758 6.39779 6.70253 7.14484 7.41627 7.88749 8.37985 9.17581 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013945 B = 0.003123 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.398239 B = 8963.099180 C =10461.548303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.021 0.979 4 C -0.118 4.118 5 C -0.106 4.106 6 C 0.130 3.870 7 H 0.046 0.954 8 N -0.708 5.708 9 C 0.510 3.490 10 O -0.593 6.593 11 C -0.123 4.123 12 C -0.110 4.110 13 C -0.073 4.073 14 C -0.110 4.110 15 C -0.142 4.142 16 C 0.064 3.936 17 O -0.401 6.401 18 C 0.055 3.945 19 C -0.124 4.124 20 C 0.184 3.816 21 N -0.604 5.604 22 C -0.252 4.252 23 H 0.073 0.927 24 C -0.052 4.052 25 N -0.932 5.932 26 Si 0.954 3.046 27 H -0.277 1.277 28 H -0.300 1.300 29 H -0.273 1.273 30 H 0.079 0.921 31 H 0.037 0.963 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.413 0.587 38 H 0.151 0.849 39 H 0.060 0.940 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.100 0.900 46 H 0.050 0.950 47 H 0.112 0.888 48 H 0.054 0.946 49 H 0.080 0.920 50 H 0.098 0.902 51 H -0.004 1.004 52 H 0.038 0.962 53 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.685 -2.896 12.019 20.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.039 0.961 4 C -0.158 4.158 5 C -0.144 4.144 6 C 0.023 3.977 7 H 0.064 0.936 8 N -0.359 5.359 9 C 0.298 3.702 10 O -0.473 6.473 11 C -0.144 4.144 12 C -0.148 4.148 13 C -0.073 4.073 14 C -0.148 4.148 15 C -0.179 4.179 16 C -0.012 4.012 17 O -0.320 6.320 18 C -0.021 4.021 19 C -0.161 4.161 20 C 0.057 3.943 21 N -0.328 5.328 22 C -0.382 4.382 23 H 0.090 0.910 24 C -0.247 4.247 25 N -0.579 5.579 26 Si 0.783 3.217 27 H -0.204 1.204 28 H -0.227 1.227 29 H -0.198 1.198 30 H 0.098 0.902 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.250 0.750 38 H 0.168 0.832 39 H 0.079 0.921 40 H 0.104 0.896 41 H 0.119 0.881 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.118 0.882 46 H 0.069 0.931 47 H 0.130 0.870 48 H 0.072 0.928 49 H 0.099 0.901 50 H 0.116 0.884 51 H 0.014 0.986 52 H 0.056 0.944 53 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 16.393 -3.458 11.422 20.277 hybrid contribution -0.964 -0.115 -1.332 1.648 sum 15.430 -3.573 10.090 18.779 Atomic orbital electron populations 1.21730 0.94789 1.01087 1.01066 1.20807 0.94272 0.93364 0.86784 0.96100 1.21952 0.94756 1.00779 0.98287 1.21635 0.96938 0.99961 0.95889 1.21471 0.79911 0.98765 0.97517 0.93572 1.45939 1.07280 1.27261 1.55395 1.21295 0.91788 0.80394 0.76748 1.90701 1.65341 1.44406 1.46836 1.22913 0.88911 1.00263 1.02299 1.22837 0.96875 0.95968 0.99118 1.21477 0.94493 0.95952 0.95346 1.22888 0.97312 0.97798 0.96756 1.22108 1.00331 0.99579 0.95927 1.22586 0.86293 0.96000 0.96348 1.87856 1.31139 1.94041 1.19007 1.22798 1.01457 0.96584 0.81285 1.21980 0.94058 0.99462 1.00604 1.20718 0.83653 0.95059 0.94911 1.44326 1.02582 1.65708 1.20194 1.19453 0.95555 1.36556 0.86664 0.90959 1.25784 0.99086 1.00886 0.98948 1.70161 1.25803 1.45615 1.16295 0.85463 0.78039 0.79085 0.79111 1.20362 1.22665 1.19785 0.90190 0.94378 0.93644 0.93104 0.88573 0.89591 0.90852 0.75045 0.83176 0.92081 0.89585 0.88051 0.92630 0.92213 0.90743 0.88191 0.93142 0.86979 0.92793 0.90109 0.88375 0.98595 0.94355 0.94708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 7.95 71.98 0.57 -4.13 16 2 C 0.15 6.14 3.49 44.97 0.16 6.29 16 3 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 4 C -0.12 -3.70 5.37 30.67 0.16 -3.53 16 5 C -0.11 -3.12 5.35 30.62 0.16 -2.95 16 6 C 0.13 5.07 2.60 45.07 0.12 5.19 16 7 H 0.05 2.13 7.58 -2.38 -0.02 2.11 16 8 N -0.71 -22.29 5.08 -442.16 -2.25 -24.54 16 9 C 0.51 17.64 7.33 87.66 0.64 18.28 16 10 O -0.59 -27.75 15.56 -3.03 -0.05 -27.80 16 11 C -0.12 -2.81 3.81 -10.85 -0.04 -2.85 16 12 C -0.11 -2.60 6.35 31.00 0.20 -2.40 16 13 C -0.07 -1.41 0.77 -52.09 -0.04 -1.45 16 14 C -0.11 -2.43 6.80 31.09 0.21 -2.22 16 15 C -0.14 -3.01 5.33 30.63 0.16 -2.84 16 16 C 0.06 1.24 6.78 72.07 0.49 1.73 16 17 O -0.40 -8.04 10.72 -148.98 -1.60 -9.64 16 18 C 0.05 0.79 6.78 72.07 0.49 1.28 16 19 C -0.12 -1.67 5.23 30.63 0.16 -1.51 16 20 C 0.18 9.30 4.86 86.36 0.42 9.72 16 21 N -0.60 -31.00 2.99 -675.20 -2.02 -33.02 16 22 C -0.25 -14.34 8.59 84.03 0.72 -13.61 16 23 H 0.07 3.97 6.24 -2.91 -0.02 3.96 16 24 C -0.05 -3.08 4.94 84.86 0.42 -2.66 16 25 N -0.93 -58.44 11.23 21.65 0.24 -58.20 16 26 Si 0.95 48.14 29.58 68.60 2.03 50.17 16 27 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 28 H -0.30 -15.46 7.11 99.48 0.71 -14.76 16 29 H -0.27 -13.32 7.11 99.48 0.71 -12.61 16 30 H 0.08 2.22 8.14 -2.38 -0.02 2.21 16 31 H 0.04 1.53 7.67 -2.39 -0.02 1.51 16 32 H 0.04 1.70 7.41 -2.39 -0.02 1.69 16 33 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.41 9.36 8.60 -92.71 -0.80 8.57 16 38 H 0.15 2.16 7.65 -2.39 -0.02 2.14 16 39 H 0.06 1.92 7.31 -2.39 -0.02 1.90 16 40 H 0.09 1.68 7.63 -2.38 -0.02 1.67 16 41 H 0.10 1.71 8.09 -2.39 -0.02 1.69 16 42 H 0.05 1.66 8.05 -2.39 -0.02 1.64 16 43 H 0.06 1.47 8.04 -2.39 -0.02 1.46 16 44 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.05 0.97 8.12 -2.39 -0.02 0.95 16 47 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 48 H 0.05 0.74 7.67 -2.39 -0.02 0.73 16 49 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.10 0.92 7.35 -2.39 -0.02 0.91 16 51 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 52 H 0.04 2.34 6.15 -2.38 -0.01 2.33 16 53 H 0.24 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -78.63 400.26 1.46 -77.17 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: 0.08 Total: 23.52 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 5.01 Total: 2.33 kcal Atomic # 7 Polarization: -111.74 SS G_CDS: -4.02 Total: -115.76 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -1.64 Total: -37.44 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.17 kcal Total: -78.63 1.46 -77.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071990074.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.764 kcal (2) G-P(sol) polarization free energy of solvation -78.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds