Wall clock time and date at job start Tue Mar 31 2020 20:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47418 * 2 1 4 4 C 1.53005 * 109.47096 * 240.00192 * 2 1 3 5 5 C 1.53002 * 109.47293 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.46992 * 59.99951 * 5 4 2 7 7 C 1.52997 * 109.47234 * 299.99914 * 6 5 4 8 8 H 1.08997 * 109.47423 * 300.00268 * 7 6 5 9 9 O 1.42898 * 109.47290 * 180.02562 * 7 6 5 10 10 C 1.42898 * 114.00007 * 89.99826 * 9 7 6 11 11 C 1.50700 * 109.47348 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99505 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00278 * 180.02562 * 11 10 9 14 14 C 1.47851 * 134.36667 * 180.02562 * 13 11 10 15 15 C 1.52559 * 85.66762 * 156.34710 * 14 13 11 16 16 C 1.47852 * 134.36537 * 359.97040 * 13 11 10 17 17 C 1.53851 * 115.93228 * 265.03730 * 15 14 13 18 18 C 1.55406 * 101.30395 * 196.14757 * 17 15 14 19 19 N 1.47534 * 104.88389 * 35.97019 * 18 17 15 20 20 C 1.36945 * 125.65790 * 155.98512 * 19 18 17 21 21 H 1.07997 * 119.99756 * 179.69398 * 20 19 18 22 22 C 1.38805 * 119.99878 * 359.69303 * 20 19 18 23 23 N 1.31624 * 120.00257 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47174 * 270.00277 * 24 22 20 26 26 H 1.48501 * 109.47062 * 30.00228 * 24 22 20 27 27 H 1.48499 * 109.46981 * 150.00382 * 24 22 20 28 28 C 1.47361 * 108.68573 * 335.72152 * 19 18 17 29 29 C 1.53000 * 109.47454 * 120.00356 * 2 1 3 30 30 H 1.09008 * 109.46979 * 299.99505 * 1 2 3 31 31 H 1.09004 * 109.47301 * 59.99719 * 1 2 3 32 32 H 1.08998 * 109.47418 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46830 * 300.00167 * 4 2 1 34 34 H 1.09004 * 109.46973 * 59.99888 * 4 2 1 35 35 H 1.08994 * 109.47261 * 180.02562 * 5 4 2 36 36 H 1.09005 * 109.46705 * 299.99905 * 5 4 2 37 37 H 1.09000 * 109.46474 * 180.02562 * 6 5 4 38 38 H 1.08997 * 109.47135 * 60.00358 * 6 5 4 39 39 H 1.09008 * 109.46817 * 60.00408 * 10 9 7 40 40 H 1.09000 * 109.47641 * 300.00389 * 10 9 7 41 41 H 1.09003 * 113.84477 * 42.15628 * 14 13 11 42 42 H 1.09004 * 113.83929 * 270.53471 * 14 13 11 43 43 H 1.09003 * 113.83806 * 89.46646 * 16 13 11 44 44 H 1.09003 * 113.84250 * 317.83969 * 16 13 11 45 45 H 1.09006 * 111.03775 * 314.37434 * 17 15 14 46 46 H 1.09001 * 111.03842 * 78.30470 * 17 15 14 47 47 H 1.09005 * 110.48286 * 277.08355 * 18 17 15 48 48 H 1.08997 * 110.30872 * 154.76964 * 18 17 15 49 49 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 50 50 H 1.09006 * 109.98421 * 121.63893 * 28 19 18 51 51 H 1.08997 * 109.98905 * 242.94272 * 28 19 18 52 52 H 1.08998 * 109.47099 * 59.99448 * 29 2 1 53 53 H 1.09008 * 109.47141 * 300.00040 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5700 -0.7207 -1.2497 6 6 4.0805 -1.4416 -0.0005 7 6 3.5706 -0.7204 1.2488 8 1 3.9335 0.3074 1.2486 9 8 4.0479 -1.3934 2.4155 10 6 5.3074 -0.9127 2.8894 11 6 5.7124 -1.6893 4.1157 12 8 4.9934 -2.5683 4.5416 13 7 6.8735 -1.4072 4.7391 14 6 7.5666 -1.9479 5.9279 15 6 8.8410 -1.4055 5.2881 16 6 7.9622 -0.4343 4.5060 17 6 9.6500 -2.4072 4.4461 18 6 11.0159 -1.6750 4.3308 19 7 11.1944 -0.9991 5.6300 20 6 12.3930 -0.6285 6.1791 21 1 12.4171 -0.1322 7.1380 22 6 13.5766 -0.8908 5.5033 23 7 13.5471 -1.4953 4.3344 24 14 15.2115 -0.3847 6.2519 25 1 15.5539 0.9909 5.8095 26 1 15.1089 -0.4171 7.7330 27 1 16.2714 -1.3255 5.8084 28 6 9.8686 -0.7832 6.2360 29 6 2.0400 -0.7213 1.2492 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2073 -2.1393 35 1 3.9333 -1.2341 -2.1399 36 1 3.9329 0.3072 -1.2499 37 1 5.1705 -1.4408 -0.0006 38 1 3.7176 -2.4694 -0.0003 39 1 5.2216 0.1446 3.1404 40 1 6.0612 -1.0417 2.1127 41 1 7.5373 -3.0352 5.9985 42 1 7.2956 -1.4513 6.8596 43 1 7.8116 0.5231 5.0048 44 1 8.2440 -0.3311 3.4582 45 1 9.7549 -3.3599 4.9653 46 1 9.1990 -2.5466 3.4636 47 1 10.9894 -0.9430 3.5236 48 1 11.8179 -2.3943 4.1648 49 1 14.3743 -1.6783 3.8620 50 1 9.8202 -1.2707 7.2098 51 1 9.6775 0.2844 6.3436 52 1 1.6766 -1.7489 1.2492 53 1 1.6767 -0.2075 2.1393 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073026397.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:32 Heat of formation + Delta-G solvation = -54.042461 kcal Electronic energy + Delta-G solvation = -29463.841324 eV Core-core repulsion = 25528.991660 eV Total energy + Delta-G solvation = -3934.849664 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.82999 -40.46610 -39.47822 -37.62401 -37.15891 -34.07546 -33.23829 -31.77249 -31.04370 -30.32526 -28.59519 -27.33047 -27.30467 -26.82920 -25.08321 -23.35807 -22.20474 -22.16620 -20.96131 -20.40312 -19.68455 -18.65080 -18.17965 -17.66373 -17.26221 -16.93820 -16.75042 -16.20083 -16.13752 -15.70617 -15.52586 -15.43550 -15.12247 -14.79977 -14.28849 -14.11000 -14.06964 -13.78590 -13.72682 -13.58522 -13.38744 -13.29671 -13.27551 -12.83427 -12.78590 -12.74521 -12.49725 -12.42648 -12.00454 -12.00077 -11.88195 -11.84308 -11.76388 -11.50270 -11.42129 -11.34473 -11.32005 -11.29768 -10.75589 -10.70201 -10.45472 -9.75283 -8.83502 -7.73302 -5.16612 1.47510 1.50150 1.51098 1.53837 1.59742 2.52945 2.68479 3.28930 3.38469 3.47532 3.65753 3.71982 3.75434 3.78430 4.00866 4.08076 4.11020 4.12738 4.20459 4.22036 4.23037 4.28743 4.40256 4.50873 4.51971 4.55447 4.62379 4.63620 4.68649 4.74120 4.77327 4.84059 4.87914 4.90720 4.98668 5.05846 5.08101 5.09567 5.13188 5.19873 5.22238 5.28064 5.29245 5.38739 5.40031 5.52062 5.56184 5.66488 5.86613 6.15092 6.35418 6.61806 7.06311 7.15316 7.83011 8.46412 9.28409 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022918 B = 0.001967 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.469932 B =14230.591411 C =14931.204432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 H 0.080 0.920 4 C -0.116 4.116 5 C -0.114 4.114 6 C -0.142 4.142 7 C 0.085 3.915 8 H 0.079 0.921 9 O -0.389 6.389 10 C 0.055 3.945 11 C 0.530 3.470 12 O -0.580 6.580 13 N -0.638 5.638 14 C 0.127 3.873 15 C -0.097 4.097 16 C 0.126 3.874 17 C -0.105 4.105 18 C 0.159 3.841 19 N -0.626 5.626 20 C -0.232 4.232 21 H 0.083 0.917 22 C -0.069 4.069 23 N -0.949 5.949 24 Si 0.977 3.023 25 H -0.287 1.287 26 H -0.270 1.270 27 H -0.297 1.297 28 C 0.149 3.851 29 C -0.109 4.109 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.106 0.894 43 H 0.115 0.885 44 H 0.096 0.904 45 H 0.061 0.939 46 H 0.075 0.925 47 H -0.004 1.004 48 H 0.068 0.932 49 H 0.245 0.755 50 H 0.034 0.966 51 H 0.041 0.959 52 H 0.056 0.944 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.035 6.032 -10.010 25.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.103 4.103 3 H 0.098 0.902 4 C -0.153 4.153 5 C -0.151 4.151 6 C -0.180 4.180 7 C 0.028 3.972 8 H 0.097 0.903 9 O -0.308 6.308 10 C -0.024 4.024 11 C 0.321 3.679 12 O -0.460 6.460 13 N -0.374 5.374 14 C 0.005 3.995 15 C -0.098 4.098 16 C 0.004 3.996 17 C -0.144 4.144 18 C 0.034 3.966 19 N -0.353 5.353 20 C -0.361 4.361 21 H 0.101 0.899 22 C -0.261 4.261 23 N -0.600 5.600 24 Si 0.806 3.194 25 H -0.214 1.214 26 H -0.195 1.195 27 H -0.224 1.224 28 C 0.024 3.976 29 C -0.146 4.146 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.123 0.877 40 H 0.113 0.887 41 H 0.093 0.907 42 H 0.124 0.876 43 H 0.133 0.867 44 H 0.114 0.886 45 H 0.080 0.920 46 H 0.093 0.907 47 H 0.014 0.986 48 H 0.086 0.914 49 H 0.055 0.945 50 H 0.052 0.948 51 H 0.059 0.941 52 H 0.075 0.925 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.517 5.372 -9.833 26.050 hybrid contribution 1.395 0.023 0.320 1.431 sum -22.123 5.395 -9.513 24.678 Atomic orbital electron populations 1.21808 0.94273 1.01937 1.02306 1.21087 0.96198 0.99645 0.93384 0.90193 1.21648 0.95153 1.00735 0.97813 1.21485 0.95909 1.01060 0.96650 1.22044 1.00812 1.00106 0.95011 1.22392 0.95181 0.95866 0.83773 0.90330 1.88006 1.35275 1.61812 1.45680 1.22212 0.88050 0.98199 0.93989 1.20501 0.78786 0.83493 0.85168 1.90688 1.52540 1.34568 1.68163 1.50106 1.19091 1.38417 1.29818 1.23089 0.86393 1.00387 0.89626 1.22304 0.93162 0.97251 0.97110 1.23317 0.80630 0.93293 1.02325 1.22530 0.95785 0.97057 0.99024 1.21771 0.94361 0.94457 0.86056 1.44871 1.01235 1.69228 1.19926 1.19451 0.83718 1.30799 1.02119 0.89900 1.25584 1.00989 1.01958 0.97613 1.70045 1.25716 1.48395 1.15805 0.85097 0.79386 0.76951 0.78016 1.21446 1.19499 1.22413 1.21153 0.83920 0.97804 0.94748 1.21652 0.92742 1.01317 0.98916 0.92539 0.91457 0.92998 0.92427 0.90453 0.91017 0.90868 0.91822 0.92552 0.87683 0.88652 0.90686 0.87569 0.86717 0.88583 0.92043 0.90681 0.98619 0.91377 0.94500 0.94782 0.94093 0.92482 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.19 71.98 0.66 -0.83 16 2 C -0.08 -0.98 2.72 -10.79 -0.03 -1.01 16 3 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 4 C -0.12 -1.27 5.20 30.60 0.16 -1.11 16 5 C -0.11 -1.33 5.92 30.60 0.18 -1.15 16 6 C -0.14 -2.32 5.54 30.59 0.17 -2.15 16 7 C 0.08 1.50 2.61 30.61 0.08 1.58 16 8 H 0.08 1.10 7.78 -2.39 -0.02 1.08 16 9 O -0.39 -9.91 9.52 -129.94 -1.24 -11.15 16 10 C 0.05 1.19 5.97 71.24 0.43 1.61 16 11 C 0.53 15.69 8.13 87.66 0.71 16.40 16 12 O -0.58 -22.77 17.23 15.99 0.28 -22.49 16 13 N -0.64 -16.74 3.62 -859.58 -3.11 -19.85 16 14 C 0.13 3.38 8.16 85.97 0.70 4.08 16 15 C -0.10 -2.87 0.97 -52.11 -0.05 -2.92 16 16 C 0.13 2.89 7.85 85.97 0.67 3.56 16 17 C -0.11 -3.71 6.43 31.71 0.20 -3.50 16 18 C 0.16 7.35 5.92 87.01 0.52 7.86 16 19 N -0.63 -30.13 3.41 -692.38 -2.36 -32.49 16 20 C -0.23 -12.39 10.28 84.03 0.86 -11.53 16 21 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 22 C -0.07 -3.80 5.49 84.86 0.47 -3.34 16 23 N -0.95 -55.12 10.09 21.65 0.22 -54.90 16 24 Si 0.98 44.50 29.55 68.60 2.03 46.53 16 25 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 27 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 28 C 0.15 5.38 6.75 86.22 0.58 5.96 16 29 C -0.11 -1.78 4.86 30.61 0.15 -1.63 16 30 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 35 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 37 H 0.06 1.04 7.87 -2.39 -0.02 1.02 16 38 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.11 1.67 8.09 -2.38 -0.02 1.65 16 40 H 0.10 1.72 7.87 -2.39 -0.02 1.71 16 41 H 0.07 2.13 8.12 -2.39 -0.02 2.11 16 42 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.11 2.13 8.00 -2.39 -0.02 2.11 16 44 H 0.10 2.04 8.12 -2.39 -0.02 2.02 16 45 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 46 H 0.07 2.38 8.06 -2.39 -0.02 2.37 16 47 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 48 H 0.07 3.72 5.87 -2.39 -0.01 3.70 16 49 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 50 H 0.03 1.22 8.09 -2.38 -0.02 1.20 16 51 H 0.04 1.38 7.86 -2.39 -0.02 1.36 16 52 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 53 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -71.27 412.57 3.13 -68.13 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.85 Total: 14.31 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 6.46 Total: 11.90 kcal Atomic # 7 Polarization: -101.99 SS G_CDS: -5.25 Total: -107.24 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -0.96 Total: -33.64 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -71.27 3.13 -68.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073026397.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.091 kcal (2) G-P(sol) polarization free energy of solvation -71.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds