Wall clock time and date at job start Tue Mar 31 2020 19:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46962 * 2 1 4 4 C 1.53005 * 109.46992 * 119.99394 * 2 1 3 5 5 C 1.52998 * 109.46992 * 180.02562 * 4 2 1 6 6 C 1.52994 * 109.47435 * 300.00087 * 5 4 2 7 7 C 1.53005 * 109.47101 * 59.99980 * 6 5 4 8 8 C 1.52994 * 109.47435 * 239.99481 * 2 1 3 9 9 H 1.09004 * 109.47046 * 60.00299 * 8 2 1 10 10 O 1.42898 * 109.47176 * 299.99947 * 8 2 1 11 11 C 1.42903 * 113.99870 * 149.99468 * 10 8 2 12 12 C 1.50701 * 109.46851 * 180.02562 * 11 10 8 13 13 O 1.21280 * 120.00460 * 0.02562 * 12 11 10 14 14 N 1.34784 * 119.99776 * 180.02562 * 12 11 10 15 15 C 1.47887 * 134.34035 * 180.02562 * 14 12 11 16 16 C 1.52381 * 85.58842 * 156.51482 * 15 14 12 17 17 C 1.47885 * 134.34215 * 0.02562 * 14 12 11 18 18 C 1.53652 * 116.38947 * 141.36034 * 16 15 14 19 19 C 1.54604 * 102.73327 * 95.48313 * 18 16 15 20 20 N 1.47138 * 107.36382 * 20.75300 * 19 18 16 21 21 C 1.36931 * 125.58918 * 180.92737 * 20 19 18 22 22 H 1.08000 * 120.00644 * 180.02562 * 21 20 19 23 23 C 1.38815 * 119.99715 * 0.02562 * 21 20 19 24 24 N 1.31611 * 120.00107 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99746 * 179.72150 * 23 21 20 26 26 H 1.48506 * 109.46826 * 60.00664 * 25 23 21 27 27 H 1.48497 * 109.47051 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47422 * 300.00472 * 25 23 21 29 29 C 1.47731 * 108.82547 * 1.19372 * 20 19 18 30 30 H 1.08999 * 109.47455 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47474 * 300.00511 * 1 2 3 32 32 H 1.09005 * 109.46963 * 60.00909 * 1 2 3 33 33 H 1.08999 * 109.46682 * 59.99941 * 4 2 1 34 34 H 1.08999 * 109.47088 * 300.00331 * 4 2 1 35 35 H 1.09005 * 109.46963 * 179.97438 * 5 4 2 36 36 H 1.08999 * 109.46962 * 60.00606 * 5 4 2 37 37 H 1.08999 * 109.47067 * 300.00566 * 6 5 4 38 38 H 1.08996 * 109.47042 * 180.02562 * 6 5 4 39 39 H 1.08999 * 109.47088 * 179.97438 * 7 6 5 40 40 H 1.08999 * 109.46772 * 59.99802 * 7 6 5 41 41 H 1.09008 * 109.46840 * 60.00558 * 11 10 8 42 42 H 1.08994 * 109.47535 * 300.00512 * 11 10 8 43 43 H 1.09000 * 113.85759 * 42.34617 * 15 14 12 44 44 H 1.09004 * 113.97147 * 270.69374 * 15 14 12 45 45 H 1.09003 * 113.85238 * 89.32156 * 17 14 12 46 46 H 1.08999 * 113.85735 * 317.65252 * 17 14 12 47 47 H 1.09007 * 110.75531 * 337.17333 * 18 16 15 48 48 H 1.08999 * 110.75931 * 213.79940 * 18 16 15 49 49 H 1.08997 * 109.86973 * 261.30832 * 19 18 16 50 50 H 1.08992 * 109.86645 * 140.19922 * 19 18 16 51 51 H 0.97000 * 120.00330 * 179.97438 * 24 23 21 52 52 H 1.08997 * 110.40226 * 96.07195 * 29 20 19 53 53 H 1.08999 * 110.39543 * 218.48714 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5699 -0.7206 1.2497 6 6 4.0805 -1.4415 0.0006 7 6 3.5705 -0.7204 -1.2488 8 6 2.0400 -0.7213 -1.2491 9 1 1.6768 -0.2075 -2.1392 10 8 1.5638 -2.0686 -1.2490 11 6 1.3700 -2.6166 -2.5545 12 6 0.8687 -4.0328 -2.4353 13 8 0.6940 -4.5243 -1.3404 14 7 0.6144 -4.7533 -3.5457 15 6 0.1279 -6.1270 -3.7976 16 6 -0.3238 -5.5925 -5.1513 17 6 0.7109 -4.4847 -4.9968 18 6 -0.1429 -6.5338 -6.3521 19 6 -1.5301 -7.2060 -6.4704 20 7 -2.4984 -6.3387 -5.7810 21 6 -3.8375 -6.5902 -5.6446 22 1 -4.4681 -5.8885 -5.1190 23 6 -4.3846 -7.7474 -6.1819 24 7 -3.6161 -8.6029 -6.8219 25 14 -6.2099 -8.0944 -5.9890 26 1 -6.9911 -7.0011 -6.6214 27 1 -6.5408 -9.3840 -6.6465 28 1 -6.5489 -8.1740 -4.5454 29 6 -1.7903 -5.1489 -5.2657 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.6766 -1.7488 1.2494 34 1 1.6766 -0.2073 2.1393 35 1 3.9333 -1.2340 2.1400 36 1 3.9329 0.3072 1.2499 37 1 3.7175 -2.4693 0.0004 38 1 5.1705 -1.4415 0.0011 39 1 3.9347 -1.2338 -2.1387 40 1 3.9335 0.3074 -1.2485 41 1 2.3164 -2.6101 -3.0954 42 1 0.6382 -2.0168 -3.0954 43 1 -0.6926 -6.4303 -3.1473 44 1 0.9203 -6.8729 -3.8603 45 1 1.6831 -4.7267 -5.4261 46 1 0.3480 -3.4990 -5.2877 47 1 0.6297 -7.2754 -6.1486 48 1 0.0908 -5.9686 -7.2543 49 1 -1.5081 -8.1870 -5.9959 50 1 -1.8047 -7.3064 -7.5203 51 1 -3.9983 -9.4117 -7.1971 52 1 -1.8853 -4.3179 -5.9646 53 1 -2.1796 -4.8696 -4.2866 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073030115.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:02 Heat of formation + Delta-G solvation = -53.193151 kcal Electronic energy + Delta-G solvation = -30143.086897 eV Core-core repulsion = 26208.274062 eV Total energy + Delta-G solvation = -3934.812835 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.78978 -40.59894 -39.42303 -37.28057 -36.83224 -34.12883 -33.48542 -31.69856 -31.09828 -30.27778 -28.75122 -27.35705 -27.21147 -26.67902 -25.13763 -23.40475 -22.26683 -22.11522 -20.60253 -20.53468 -19.58016 -18.82132 -17.97923 -17.65906 -17.22937 -16.82744 -16.50576 -16.31059 -16.19511 -15.81260 -15.55829 -15.27667 -15.05349 -14.55836 -14.26500 -14.19075 -14.03982 -13.89677 -13.72400 -13.62896 -13.44998 -13.22015 -13.02067 -12.86459 -12.77467 -12.53656 -12.47040 -12.41862 -12.39782 -12.07854 -11.93680 -11.75680 -11.73151 -11.66224 -11.41147 -11.35966 -11.27892 -10.83737 -10.70816 -10.64047 -10.35436 -9.72745 -8.87743 -7.84944 -5.19357 1.44050 1.46981 1.53020 1.54263 1.59586 2.48497 2.82726 3.29220 3.42227 3.45586 3.65809 3.76475 3.81883 3.83363 3.92078 4.12622 4.17755 4.19536 4.23135 4.27084 4.29868 4.38367 4.44530 4.56133 4.59421 4.61498 4.64479 4.65963 4.71699 4.77392 4.81508 4.84071 4.92019 4.96999 4.99937 5.06633 5.07932 5.10114 5.15771 5.22857 5.25831 5.31144 5.35837 5.42395 5.45035 5.46196 5.62657 5.74053 5.82296 6.21851 6.25975 6.70073 7.12217 7.12450 7.79141 8.42040 9.24551 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020425 B = 0.002292 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.546523 B =12214.220235 C =12943.993259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 H 0.104 0.896 4 C -0.113 4.113 5 C -0.115 4.115 6 C -0.117 4.117 7 C -0.137 4.137 8 C 0.085 3.915 9 H 0.081 0.919 10 O -0.378 6.378 11 C 0.058 3.942 12 C 0.525 3.475 13 O -0.586 6.586 14 N -0.642 5.642 15 C 0.124 3.876 16 C -0.098 4.098 17 C 0.133 3.867 18 C -0.110 4.110 19 C 0.182 3.818 20 N -0.628 5.628 21 C -0.243 4.243 22 H 0.075 0.925 23 C -0.064 4.064 24 N -0.947 5.947 25 Si 0.974 3.026 26 H -0.275 1.275 27 H -0.292 1.292 28 H -0.283 1.283 29 C 0.159 3.841 30 H 0.034 0.966 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.038 0.962 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.039 0.961 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.044 0.956 44 H 0.104 0.896 45 H 0.129 0.871 46 H 0.110 0.890 47 H 0.089 0.911 48 H 0.093 0.907 49 H 0.006 0.994 50 H 0.009 0.991 51 H 0.247 0.753 52 H 0.042 0.958 53 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.193 20.681 6.706 29.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.102 4.102 3 H 0.122 0.878 4 C -0.150 4.150 5 C -0.152 4.152 6 C -0.154 4.154 7 C -0.174 4.174 8 C 0.028 3.972 9 H 0.099 0.901 10 O -0.297 6.297 11 C -0.022 4.022 12 C 0.315 3.685 13 O -0.466 6.466 14 N -0.378 5.378 15 C 0.002 3.998 16 C -0.100 4.100 17 C 0.012 3.988 18 C -0.149 4.149 19 C 0.057 3.943 20 N -0.354 5.354 21 C -0.372 4.372 22 H 0.093 0.907 23 C -0.257 4.257 24 N -0.596 5.596 25 Si 0.802 3.198 26 H -0.201 1.201 27 H -0.218 1.218 28 H -0.209 1.209 29 C 0.034 3.966 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.058 0.942 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.124 0.876 42 H 0.117 0.883 43 H 0.063 0.937 44 H 0.121 0.879 45 H 0.147 0.853 46 H 0.128 0.872 47 H 0.107 0.893 48 H 0.112 0.888 49 H 0.025 0.975 50 H 0.027 0.973 51 H 0.056 0.944 52 H 0.060 0.940 53 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 18.959 20.302 7.589 28.795 hybrid contribution -1.570 -1.075 0.062 1.904 sum 17.388 19.227 7.651 27.029 Atomic orbital electron populations 1.21770 0.95428 1.01029 1.02122 1.21271 0.95597 0.99496 0.93803 0.87813 1.21501 0.96102 0.99910 0.97523 1.21506 0.94941 1.01182 0.97605 1.21412 1.00083 0.98965 0.94968 1.22043 0.94776 1.02280 0.98338 1.22434 0.93994 0.81724 0.99075 0.90125 1.88054 1.86867 1.29233 1.25505 1.22184 1.02622 0.90056 0.87298 1.20743 0.76734 0.88538 0.82443 1.90694 1.54323 1.73504 1.28080 1.50238 1.65441 1.15274 1.06831 1.22943 0.97579 0.85152 0.94113 1.22354 0.95481 0.97526 0.94641 1.23319 0.99480 0.99775 0.76221 1.22523 0.96871 0.98251 0.97244 1.21014 0.86712 0.92063 0.94498 1.44850 1.04424 1.21384 1.64785 1.19340 0.84188 1.04009 1.29663 0.90721 1.25575 1.02127 0.97216 1.00769 1.70158 1.34904 1.12247 1.42332 0.85228 0.80128 0.76967 0.77473 1.20131 1.21819 1.20935 1.21243 0.89710 0.89729 0.95952 0.94719 0.92076 0.91925 0.94334 0.91666 0.92543 0.90398 0.94231 0.91308 0.91303 0.88892 0.87591 0.88348 0.93698 0.87853 0.85331 0.87166 0.89272 0.88822 0.97521 0.97291 0.94399 0.94043 0.96026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.05 71.98 0.65 -1.92 16 2 C -0.08 -1.28 2.55 -10.79 -0.03 -1.30 16 3 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 4 C -0.11 -2.04 5.06 30.60 0.15 -1.89 16 5 C -0.11 -1.72 5.92 30.59 0.18 -1.54 16 6 C -0.12 -1.88 5.78 30.59 0.18 -1.70 16 7 C -0.14 -1.72 5.63 30.61 0.17 -1.55 16 8 C 0.08 1.32 2.35 30.61 0.07 1.39 16 9 H 0.08 0.93 7.79 -2.38 -0.02 0.91 16 10 O -0.38 -9.01 7.50 -129.94 -0.97 -9.99 16 11 C 0.06 1.17 5.97 71.24 0.43 1.59 16 12 C 0.52 16.01 8.13 87.66 0.71 16.73 16 13 O -0.59 -24.60 17.22 16.01 0.28 -24.33 16 14 N -0.64 -17.39 3.62 -863.56 -3.12 -20.51 16 15 C 0.12 3.93 8.16 85.91 0.70 4.63 16 16 C -0.10 -2.88 0.99 -52.07 -0.05 -2.93 16 17 C 0.13 2.47 7.99 85.90 0.69 3.16 16 18 C -0.11 -3.37 6.36 31.36 0.20 -3.17 16 19 C 0.18 8.55 5.39 86.80 0.47 9.02 16 20 N -0.63 -31.77 3.41 -692.87 -2.36 -34.13 16 21 C -0.24 -13.80 10.28 84.04 0.86 -12.94 16 22 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 23 C -0.06 -3.66 5.49 84.86 0.47 -3.20 16 24 N -0.95 -56.99 10.30 21.65 0.22 -56.77 16 25 Si 0.97 46.58 29.55 68.60 2.03 48.60 16 26 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 27 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 28 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 29 C 0.16 6.16 6.65 86.36 0.57 6.74 16 30 H 0.03 0.83 7.68 -2.39 -0.02 0.81 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.04 0.98 7.68 -2.39 -0.02 0.96 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.04 0.90 7.68 -2.39 -0.02 0.88 16 38 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 0.79 7.88 -2.39 -0.02 0.77 16 40 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.11 1.45 7.88 -2.38 -0.02 1.43 16 42 H 0.10 1.54 8.08 -2.39 -0.02 1.52 16 43 H 0.04 1.77 8.13 -2.39 -0.02 1.75 16 44 H 0.10 2.84 8.04 -2.38 -0.02 2.82 16 45 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.11 1.53 8.12 -2.39 -0.02 1.51 16 47 H 0.09 2.33 7.99 -2.38 -0.02 2.31 16 48 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 49 H 0.01 0.35 7.38 -2.39 -0.02 0.33 16 50 H 0.01 0.47 7.50 -2.39 -0.02 0.45 16 51 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 52 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 53 H 0.02 0.91 8.08 -2.39 -0.02 0.89 16 Total: -1.00 -79.32 410.27 3.34 -75.98 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 0.85 Total: 10.03 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 6.43 Total: 11.12 kcal Atomic # 7 Polarization: -106.15 SS G_CDS: -5.26 Total: -111.41 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -0.70 Total: -34.31 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Total: -79.32 3.34 -75.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073030115.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.785 kcal (2) G-P(sol) polarization free energy of solvation -79.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds