Wall clock time and date at job start Tue Mar 31 2020 20:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47328 * 2 1 4 4 C 1.53004 * 109.46848 * 120.00034 * 2 1 3 5 5 C 1.53003 * 109.46848 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.46842 * 299.99708 * 5 4 2 7 7 H 1.08995 * 109.47369 * 300.00232 * 6 5 4 8 8 C 1.50701 * 109.47005 * 180.02562 * 6 5 4 9 9 O 1.21289 * 120.00002 * 254.39344 * 8 6 5 10 10 N 1.34780 * 120.00024 * 74.11579 * 8 6 5 11 11 C 1.46835 * 120.40384 * 174.44738 * 10 8 6 12 12 C 1.52912 * 109.49262 * 232.17965 * 11 10 8 13 13 C 1.52783 * 108.89100 * 306.41929 * 12 11 10 14 14 H 1.08998 * 108.94910 * 302.94766 * 13 12 11 15 15 O 1.42769 * 111.77750 * 182.72379 * 13 12 11 16 16 C 1.43145 * 114.27354 * 177.09341 * 15 13 12 17 17 C 1.53196 * 109.73579 * 61.35759 * 16 15 13 18 18 N 1.47348 * 108.80354 * 308.78299 * 17 16 15 19 19 C 1.36936 * 121.30532 * 230.26163 * 18 17 16 20 20 H 1.07999 * 119.99914 * 150.54596 * 19 18 17 21 21 C 1.38808 * 119.99840 * 330.53446 * 19 18 17 22 22 N 1.31618 * 120.00467 * 349.89894 * 21 19 18 23 23 Si 1.86809 * 119.99793 * 169.89519 * 21 19 18 24 24 H 1.48503 * 109.46754 * 90.00420 * 23 21 19 25 25 H 1.48493 * 109.47102 * 210.00478 * 23 21 19 26 26 H 1.48501 * 109.46901 * 330.00433 * 23 21 19 27 27 C 1.46879 * 117.39229 * 50.24245 * 18 17 16 28 28 H 1.09004 * 109.65597 * 68.35809 * 27 18 17 29 29 C 1.47127 * 120.40470 * 354.71782 * 10 8 6 30 30 C 1.53004 * 109.47161 * 60.00483 * 6 5 4 31 31 C 1.52999 * 109.46842 * 239.99742 * 2 1 3 32 32 H 1.08995 * 109.47328 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46832 * 300.00273 * 1 2 3 34 34 H 1.09003 * 109.47008 * 60.00182 * 1 2 3 35 35 H 1.09001 * 109.46919 * 299.99916 * 4 2 1 36 36 H 1.08995 * 109.47184 * 59.99877 * 4 2 1 37 37 H 1.09001 * 109.46961 * 180.02562 * 5 4 2 38 38 H 1.08995 * 109.47328 * 59.99966 * 5 4 2 39 39 H 1.09002 * 109.51383 * 352.17287 * 11 10 8 40 40 H 1.08997 * 109.51158 * 112.31482 * 11 10 8 41 41 H 1.09005 * 109.66168 * 186.52703 * 12 11 10 42 42 H 1.09001 * 109.54214 * 66.23982 * 12 11 10 43 43 H 1.09004 * 109.42781 * 301.27809 * 16 15 13 44 44 H 1.09001 * 109.43204 * 181.43838 * 16 15 13 45 45 H 1.09005 * 109.58055 * 188.99112 * 17 16 15 46 46 H 1.08996 * 109.69613 * 68.65285 * 17 16 15 47 47 H 0.97000 * 120.00400 * 179.97438 * 22 21 19 48 48 H 1.09004 * 109.72940 * 246.44164 * 29 10 8 49 49 H 1.08993 * 109.72817 * 7.11764 * 29 10 8 50 50 H 1.08995 * 109.47184 * 59.99635 * 30 6 5 51 51 H 1.09001 * 109.46919 * 179.97438 * 30 6 5 52 52 H 1.09000 * 109.47576 * 60.00649 * 31 2 1 53 53 H 1.08995 * 109.47369 * 300.00232 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5700 -0.7218 1.2490 6 6 4.0794 -1.4435 -0.0003 7 1 3.7157 -2.4710 0.0000 8 6 5.5864 -1.4447 -0.0003 9 8 6.1934 -0.7103 -0.7509 10 7 6.2597 -2.2576 0.8377 11 6 7.7228 -2.3560 0.7619 12 6 8.1304 -3.8256 0.6502 13 6 7.4912 -4.6048 1.7985 14 1 7.7994 -4.1584 2.7439 15 8 7.8828 -5.9777 1.7896 16 6 7.3660 -6.7441 2.8825 17 6 5.8348 -6.7465 2.8344 18 7 5.3611 -5.3560 2.7185 19 6 4.3963 -4.8610 3.5546 20 1 4.3838 -3.8099 3.8023 21 6 3.4341 -5.7102 4.0837 22 7 3.3238 -6.9419 3.6329 23 14 2.2958 -5.1050 5.4356 24 1 1.0787 -4.5092 4.8279 25 1 1.9080 -6.2456 6.3037 26 1 2.9958 -4.0790 6.2495 27 6 5.9647 -4.5216 1.6713 28 1 5.6581 -4.8853 0.6905 29 6 5.5372 -3.0619 1.8356 30 6 3.5695 -0.7222 -1.2495 31 6 2.0400 -0.7213 -1.2492 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.6766 -0.2074 2.1392 36 1 1.6766 -1.7489 1.2493 37 1 3.9333 -1.2361 2.1387 38 1 3.9337 0.3056 1.2487 39 1 8.0794 -1.8132 -0.1135 40 1 8.1636 -1.9267 1.6616 41 1 9.2154 -3.9109 0.7103 42 1 7.7845 -4.2285 -0.3017 43 1 7.6985 -6.3045 3.8229 44 1 7.7325 -7.7683 2.8125 45 1 5.4413 -7.1915 3.7484 46 1 5.4952 -7.3212 1.9728 47 1 2.6516 -7.5354 4.0028 48 1 5.7878 -2.7158 2.8384 49 1 4.4633 -2.9725 1.6725 50 1 3.9332 0.3052 -1.2498 51 1 3.9328 -1.2362 -2.1395 52 1 1.6767 -0.2075 -2.1393 53 1 1.6766 -1.7489 -1.2492 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074387596.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:28 Heat of formation + Delta-G solvation = -91.840521 kcal Electronic energy + Delta-G solvation = -32063.642953 eV Core-core repulsion = 28127.154242 eV Total energy + Delta-G solvation = -3936.488711 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.82275 -40.37780 -38.96208 -37.40944 -36.48401 -34.12219 -33.31620 -32.86472 -31.73955 -31.34620 -28.86217 -27.99950 -26.60224 -25.44533 -23.88707 -23.52524 -23.40598 -22.09037 -21.38257 -20.70932 -20.04388 -18.67246 -18.35174 -17.11077 -17.04721 -16.97995 -16.56601 -16.26239 -15.88082 -15.51590 -15.37958 -15.26244 -15.19038 -15.07974 -14.64807 -14.49154 -14.22508 -13.90207 -13.71603 -13.60387 -13.25881 -13.14225 -13.10935 -12.94654 -12.81281 -12.64679 -12.40663 -12.35233 -12.31107 -12.07110 -12.01625 -11.93979 -11.84813 -11.73008 -11.59294 -11.29427 -11.24202 -10.93453 -10.75571 -10.57766 -10.47763 -9.71965 -8.68677 -7.86625 -5.39052 1.48865 1.51265 1.53389 1.58786 1.90300 2.48939 2.77572 3.25499 3.31620 3.58294 3.69429 3.72465 3.76044 3.95137 4.03074 4.11763 4.14917 4.16237 4.20238 4.22753 4.36209 4.42322 4.48204 4.49447 4.55061 4.57136 4.58238 4.63508 4.71654 4.77350 4.82033 4.86595 4.90589 4.93287 5.00281 5.00990 5.04650 5.11406 5.14298 5.17805 5.26016 5.27945 5.31897 5.41001 5.42527 5.49606 5.58444 5.61573 5.64402 6.27682 6.30998 6.36719 7.07450 7.08878 7.74942 8.32522 9.19499 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.008956 B = 0.005317 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3125.544307 B = 5265.090145 C = 7789.576104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 H 0.075 0.925 4 C -0.112 4.112 5 C -0.107 4.107 6 C -0.105 4.105 7 H 0.086 0.914 8 C 0.522 3.478 9 O -0.574 6.574 10 N -0.610 5.610 11 C 0.116 3.884 12 C -0.112 4.112 13 C 0.080 3.920 14 H 0.054 0.946 15 O -0.398 6.398 16 C 0.051 3.949 17 C 0.147 3.853 18 N -0.603 5.603 19 C -0.257 4.257 20 H 0.082 0.918 21 C -0.042 4.042 22 N -0.936 5.936 23 Si 0.961 3.039 24 H -0.282 1.282 25 H -0.298 1.298 26 H -0.266 1.266 27 C 0.133 3.867 28 H 0.010 0.990 29 C 0.130 3.870 30 C -0.091 4.091 31 C -0.110 4.110 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.048 0.952 44 H 0.106 0.894 45 H 0.073 0.927 46 H -0.003 1.003 47 H 0.250 0.750 48 H 0.077 0.923 49 H 0.095 0.905 50 H 0.067 0.933 51 H 0.056 0.944 52 H 0.078 0.922 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.511 11.750 -4.704 12.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 H 0.094 0.906 4 C -0.150 4.150 5 C -0.144 4.144 6 C -0.126 4.126 7 H 0.104 0.896 8 C 0.312 3.688 9 O -0.454 6.454 10 N -0.342 5.342 11 C -0.006 4.006 12 C -0.151 4.151 13 C 0.021 3.979 14 H 0.072 0.928 15 O -0.317 6.317 16 C -0.027 4.027 17 C 0.021 3.979 18 N -0.328 5.328 19 C -0.386 4.386 20 H 0.100 0.900 21 C -0.238 4.238 22 N -0.582 5.582 23 Si 0.789 3.211 24 H -0.209 1.209 25 H -0.225 1.225 26 H -0.190 1.190 27 C 0.025 3.975 28 H 0.028 0.972 29 C 0.008 3.992 30 C -0.129 4.129 31 C -0.148 4.148 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.116 0.884 40 H 0.103 0.897 41 H 0.124 0.876 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.124 0.876 45 H 0.092 0.908 46 H 0.015 0.985 47 H 0.059 0.941 48 H 0.096 0.904 49 H 0.113 0.887 50 H 0.086 0.914 51 H 0.074 0.926 52 H 0.097 0.903 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.832 11.950 -5.163 13.146 hybrid contribution -0.922 -0.671 0.911 1.459 sum 0.910 11.279 -4.252 12.088 Atomic orbital electron populations 1.21809 0.94435 1.01776 1.02231 1.21140 0.96032 0.99557 0.94060 0.90634 1.21593 0.93720 1.00985 0.98700 1.21549 0.97069 1.00495 0.95327 1.21371 0.89953 1.02104 0.99180 0.89561 1.21029 0.90920 0.78536 0.78315 1.90617 1.71095 1.41615 1.42080 1.48315 1.07819 1.42806 1.35283 1.21547 0.79270 0.95582 1.04169 1.21731 1.02314 0.93762 0.97280 1.22493 0.94023 0.82565 0.98809 0.92760 1.87708 1.73099 1.21533 1.49406 1.23209 0.94831 0.95935 0.88701 1.21289 0.90879 0.85736 0.99947 1.44222 1.44151 1.09176 1.35215 1.19448 1.03742 0.94908 1.20504 0.90014 1.25840 0.98755 0.96905 1.02313 1.70131 1.36245 1.07519 1.44283 0.85366 0.79291 0.77215 0.79196 1.20898 1.22509 1.19040 1.21415 0.93235 0.91697 0.91108 0.97239 1.21772 0.97507 0.88696 0.91268 1.21279 0.96130 1.00529 0.94990 1.21590 0.93720 1.00946 0.98503 0.93234 0.92220 0.91773 0.90658 0.92603 0.91557 0.91089 0.88422 0.89707 0.87649 0.92037 0.93394 0.87612 0.90842 0.98465 0.94091 0.90437 0.88723 0.91449 0.92557 0.90318 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.19 71.98 0.66 -1.80 16 2 C -0.09 -1.72 2.72 -10.79 -0.03 -1.75 16 3 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 4 C -0.11 -2.51 5.20 30.60 0.16 -2.35 16 5 C -0.11 -2.63 4.84 30.60 0.15 -2.48 16 6 C -0.10 -2.88 1.66 -11.54 -0.02 -2.90 16 7 H 0.09 2.58 7.14 -2.39 -0.02 2.57 16 8 C 0.52 16.41 6.93 87.66 0.61 17.02 16 9 O -0.57 -20.43 15.42 -3.06 -0.05 -20.48 16 10 N -0.61 -18.60 2.99 -819.54 -2.45 -21.04 16 11 C 0.12 3.08 6.36 86.29 0.55 3.63 16 12 C -0.11 -3.12 5.83 30.49 0.18 -2.95 16 13 C 0.08 2.79 2.50 30.66 0.08 2.87 16 14 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 15 O -0.40 -15.14 10.49 -148.98 -1.56 -16.70 16 16 C 0.05 1.92 6.99 72.05 0.50 2.43 16 17 C 0.15 6.92 5.39 86.28 0.46 7.38 16 18 N -0.60 -28.38 3.05 -673.89 -2.06 -30.43 16 19 C -0.26 -12.64 8.84 84.03 0.74 -11.90 16 20 H 0.08 3.76 6.32 -2.91 -0.02 3.74 16 21 C -0.04 -2.19 5.10 84.86 0.43 -1.76 16 22 N -0.94 -52.31 10.99 21.65 0.24 -52.07 16 23 Si 0.96 41.52 29.57 68.60 2.03 43.55 16 24 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 25 H -0.30 -13.27 7.11 99.48 0.71 -12.56 16 26 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 27 C 0.13 5.30 3.00 45.05 0.14 5.44 16 28 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 29 C 0.13 4.41 3.38 86.26 0.29 4.71 16 30 C -0.09 -2.24 4.60 30.58 0.14 -2.10 16 31 C -0.11 -2.25 5.20 30.58 0.16 -2.09 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.75 6.07 -2.39 -0.01 1.73 16 38 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.10 2.58 7.03 -2.39 -0.02 2.57 16 40 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.11 2.42 8.14 -2.38 -0.02 2.40 16 42 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 44 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 45 H 0.07 3.80 6.21 -2.38 -0.01 3.78 16 46 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 47 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 48 H 0.08 2.61 7.40 -2.39 -0.02 2.59 16 49 H 0.09 3.32 4.48 -2.39 -0.01 3.31 16 50 H 0.07 1.70 7.95 -2.39 -0.02 1.68 16 51 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 52 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 53 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -61.03 389.01 2.23 -58.80 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 0.87 Total: 26.97 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 5.20 Total: 11.41 kcal Atomic # 7 Polarization: -99.28 SS G_CDS: -4.27 Total: -103.55 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -1.61 Total: -37.18 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -61.03 2.23 -58.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074387596.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.038 kcal (2) G-P(sol) polarization free energy of solvation -61.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds