Wall clock time and date at job start Tue Mar 31 2020 20:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47538 * 2 1 4 4 C 1.53005 * 109.47169 * 120.00580 * 2 1 3 5 5 C 1.53001 * 109.46865 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47180 * 299.99328 * 5 4 2 7 7 H 1.09000 * 109.47138 * 300.00675 * 6 5 4 8 8 C 1.50696 * 109.47307 * 180.02562 * 6 5 4 9 9 O 1.21281 * 120.00204 * 263.96551 * 8 6 5 10 10 N 1.34780 * 119.99900 * 83.95684 * 8 6 5 11 11 C 1.46984 * 120.74283 * 3.70329 * 10 8 6 12 12 C 1.52802 * 107.97692 * 236.15156 * 11 10 8 13 13 C 1.52483 * 109.05520 * 303.71642 * 12 11 10 14 14 H 1.09006 * 108.32948 * 180.52660 * 13 12 11 15 15 O 1.44828 * 112.05792 * 300.36047 * 13 12 11 16 16 C 1.43080 * 114.40762 * 184.96708 * 15 13 12 17 17 C 1.53229 * 109.41910 * 298.25158 * 16 15 13 18 18 N 1.47165 * 108.70223 * 51.62673 * 17 16 15 19 19 C 1.36941 * 121.20044 * 129.11664 * 18 17 16 20 20 H 1.08002 * 119.99859 * 214.78910 * 19 18 17 21 21 C 1.38814 * 119.99939 * 34.79482 * 19 18 17 22 22 N 1.31618 * 119.99807 * 357.34602 * 21 19 18 23 23 Si 1.86801 * 119.99873 * 177.34509 * 21 19 18 24 24 H 1.48499 * 109.46885 * 90.00213 * 23 21 19 25 25 H 1.48498 * 109.46836 * 209.99865 * 23 21 19 26 26 H 1.48491 * 109.47109 * 329.99742 * 23 21 19 27 27 C 1.47575 * 117.59284 * 309.10195 * 18 17 16 28 28 H 1.09003 * 110.28109 * 173.09646 * 27 18 17 29 29 C 1.46812 * 120.73831 * 183.98094 * 10 8 6 30 30 C 1.52996 * 109.47042 * 60.00333 * 6 5 4 31 31 C 1.53000 * 109.47462 * 300.00119 * 30 6 5 32 32 H 1.08997 * 109.47082 * 299.99918 * 1 2 3 33 33 H 1.08995 * 109.47148 * 59.99623 * 1 2 3 34 34 H 1.09000 * 109.47642 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.47241 * 59.99261 * 4 2 1 36 36 H 1.09001 * 109.46588 * 299.99224 * 4 2 1 37 37 H 1.08999 * 109.47477 * 60.00226 * 5 4 2 38 38 H 1.09001 * 109.46544 * 179.97438 * 5 4 2 39 39 H 1.09000 * 109.64115 * 354.30983 * 11 10 8 40 40 H 1.09000 * 109.63884 * 114.92738 * 11 10 8 41 41 H 1.08997 * 108.65253 * 184.52137 * 12 11 10 42 42 H 1.09006 * 110.93871 * 64.28713 * 12 11 10 43 43 H 1.09000 * 109.48261 * 178.26669 * 16 15 13 44 44 H 1.09000 * 109.49137 * 58.23735 * 16 15 13 45 45 H 1.09009 * 109.59416 * 291.86967 * 17 16 15 46 46 H 1.08992 * 109.60520 * 171.40388 * 17 16 15 47 47 H 0.97002 * 119.99496 * 180.02562 * 22 21 19 48 48 H 1.09005 * 109.51842 * 245.52751 * 29 10 8 49 49 H 1.08999 * 109.52355 * 5.72097 * 29 10 8 50 50 H 1.08994 * 109.47550 * 179.97438 * 30 6 5 51 51 H 1.09002 * 109.47245 * 59.99807 * 30 6 5 52 52 H 1.09002 * 109.46636 * 300.00062 * 31 30 6 53 53 H 1.08995 * 109.47445 * 179.97438 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5700 -0.7219 1.2488 6 6 4.0795 -1.4435 -0.0004 7 1 3.7157 -2.4710 -0.0002 8 6 5.5864 -1.4446 -0.0005 9 8 6.1934 -0.5957 -0.6184 10 7 6.2597 -2.3889 0.6862 11 6 5.5428 -3.4722 1.3741 12 6 5.9512 -3.4475 2.8463 13 6 7.4683 -3.5652 2.9442 14 1 7.7456 -3.5559 3.9983 15 8 7.9584 -4.7905 2.3475 16 6 9.3635 -5.0064 2.5098 17 6 10.1354 -3.8754 1.8222 18 7 9.6073 -2.5866 2.2974 19 6 10.4413 -1.6102 2.7731 20 1 10.1184 -0.9709 3.5815 21 6 11.7016 -1.4420 2.2161 22 7 12.1152 -2.2542 1.2666 23 14 12.8106 -0.0629 2.8142 24 1 13.6461 -0.5526 3.9400 25 1 13.6892 0.3829 1.7032 26 1 11.9781 1.0772 3.2749 27 6 8.1465 -2.3845 2.2426 28 1 7.8759 -1.4486 2.7315 29 6 7.7251 -2.3549 0.7690 30 6 3.5695 -0.7223 -1.2496 31 6 2.0394 -0.7216 -1.2493 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3634 -1.0276 -0.0005 35 1 1.6766 -1.7490 1.2492 36 1 1.6767 -0.2075 2.1392 37 1 3.9338 0.3056 1.2487 38 1 3.9333 -1.2355 2.1390 39 1 4.4685 -3.3001 1.3083 40 1 5.7928 -4.4275 0.9127 41 1 5.4887 -4.2958 3.3507 42 1 5.6280 -2.5229 3.3248 43 1 9.6390 -5.9603 2.0601 44 1 9.6090 -5.0207 3.5717 45 1 10.0054 -3.9479 0.7423 46 1 11.1938 -3.9511 2.0710 47 1 12.9960 -2.1369 0.8777 48 1 8.1391 -3.2220 0.2542 49 1 8.0952 -1.4420 0.3025 50 1 3.9327 -1.2360 -2.1396 51 1 3.9331 0.3053 -1.2498 52 1 1.6758 -1.7492 -1.2491 53 1 1.6761 -0.2074 -2.1390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074387597.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:32 Heat of formation + Delta-G solvation = -93.556347 kcal Electronic energy + Delta-G solvation = -31620.897780 eV Core-core repulsion = 27684.334666 eV Total energy + Delta-G solvation = -3936.563115 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.73608 -40.32448 -38.82023 -37.15886 -36.35091 -33.97947 -33.28345 -32.96650 -31.68903 -31.03605 -29.34824 -27.86866 -26.01384 -25.64689 -24.38706 -23.56785 -22.99653 -22.71440 -20.90457 -20.46618 -19.51896 -18.92055 -18.21732 -17.16121 -17.10608 -16.90126 -16.48857 -16.14152 -16.00608 -15.57320 -15.19782 -15.14861 -15.09800 -14.98436 -14.80664 -14.35068 -14.14029 -13.83622 -13.71040 -13.57524 -13.31996 -13.08599 -13.05764 -12.99228 -12.89965 -12.63567 -12.45719 -12.30605 -12.24134 -12.14438 -11.98413 -11.93300 -11.83088 -11.66302 -11.51557 -11.24503 -11.13738 -10.89393 -10.68654 -10.60959 -10.50943 -9.68634 -8.61921 -7.95700 -5.53439 1.39604 1.42955 1.51149 1.62864 2.00170 2.41944 2.81779 3.20680 3.43180 3.50047 3.72615 3.78185 3.84057 4.00196 4.10933 4.14405 4.18578 4.23416 4.25790 4.27952 4.39297 4.47317 4.52294 4.56081 4.61006 4.61229 4.63503 4.66847 4.80658 4.87919 4.88262 4.90892 4.96459 4.98822 5.04252 5.05941 5.10289 5.14663 5.22272 5.26062 5.30536 5.32486 5.35617 5.48099 5.48682 5.50910 5.57269 5.63501 5.66223 6.26078 6.35403 6.51881 7.04869 7.21508 7.67700 8.25543 9.07403 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016301 B = 0.003205 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.324302 B = 8733.759264 C = 9575.518609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.055 0.945 4 C -0.103 4.103 5 C -0.106 4.106 6 C -0.092 4.092 7 H 0.122 0.878 8 C 0.505 3.495 9 O -0.600 6.600 10 N -0.605 5.605 11 C 0.107 3.893 12 C -0.114 4.114 13 C 0.083 3.917 14 H 0.050 0.950 15 O -0.389 6.389 16 C 0.053 3.947 17 C 0.144 3.856 18 N -0.604 5.604 19 C -0.270 4.270 20 H 0.065 0.935 21 C -0.039 4.039 22 N -0.929 5.929 23 Si 0.969 3.031 24 H -0.276 1.276 25 H -0.294 1.294 26 H -0.273 1.273 27 C 0.135 3.865 28 H 0.059 0.941 29 C 0.125 3.875 30 C -0.102 4.102 31 C -0.104 4.104 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.044 0.956 38 H 0.080 0.920 39 H 0.123 0.877 40 H 0.077 0.923 41 H 0.113 0.887 42 H 0.097 0.903 43 H 0.106 0.894 44 H 0.043 0.957 45 H -0.003 1.003 46 H 0.073 0.927 47 H 0.253 0.747 48 H 0.045 0.955 49 H 0.037 0.963 50 H 0.052 0.948 51 H 0.045 0.955 52 H 0.081 0.919 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.911 -3.798 2.068 25.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.073 0.927 4 C -0.141 4.141 5 C -0.144 4.144 6 C -0.113 4.113 7 H 0.140 0.860 8 C 0.295 3.705 9 O -0.481 6.481 10 N -0.337 5.337 11 C -0.014 4.014 12 C -0.152 4.152 13 C 0.024 3.976 14 H 0.068 0.932 15 O -0.309 6.309 16 C -0.025 4.025 17 C 0.019 3.981 18 N -0.327 5.327 19 C -0.400 4.400 20 H 0.082 0.918 21 C -0.235 4.235 22 N -0.574 5.574 23 Si 0.796 3.204 24 H -0.203 1.203 25 H -0.220 1.220 26 H -0.198 1.198 27 C 0.027 3.973 28 H 0.078 0.922 29 C 0.000 4.000 30 C -0.140 4.140 31 C -0.142 4.142 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.099 0.901 39 H 0.141 0.859 40 H 0.096 0.904 41 H 0.132 0.868 42 H 0.115 0.885 43 H 0.124 0.876 44 H 0.062 0.938 45 H 0.015 0.985 46 H 0.091 0.909 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.055 0.945 50 H 0.071 0.929 51 H 0.064 0.936 52 H 0.099 0.901 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -24.524 -3.488 1.584 24.821 hybrid contribution 2.195 1.228 -0.205 2.524 sum -22.329 -2.260 1.380 22.485 Atomic orbital electron populations 1.21783 0.93903 1.02469 1.01831 1.21186 0.96358 0.99106 0.94926 0.92668 1.21568 0.92422 1.02212 0.97856 1.21510 0.97662 0.99764 0.95488 1.21399 0.87624 1.03570 0.98702 0.86010 1.21666 0.91842 0.79761 0.77248 1.90661 1.71806 1.40191 1.45480 1.48396 1.06261 1.27637 1.51414 1.22001 0.98096 0.89555 0.91727 1.21821 0.91116 1.05083 0.97165 1.22628 0.95574 0.84001 0.95364 0.93196 1.88028 1.23238 1.40422 1.79186 1.23151 0.80982 0.98883 0.99471 1.21360 0.98428 0.84168 0.94161 1.44370 1.00775 1.13325 1.74267 1.19388 0.96894 1.11324 1.12378 0.91772 1.26072 1.00805 1.00022 0.96646 1.70073 1.19497 1.38782 1.29035 0.85266 0.78435 0.79629 0.77089 1.20258 1.22015 1.19774 1.21668 0.84853 0.97403 0.93326 0.92235 1.21664 0.79863 0.99683 0.98793 1.21365 0.97067 0.99905 0.95670 1.21569 0.92514 1.01903 0.98181 0.92329 0.92820 0.91663 0.89591 0.90605 0.93673 0.90110 0.85910 0.90436 0.86845 0.88469 0.87592 0.93825 0.98496 0.90923 0.93808 0.93639 0.94457 0.92916 0.93593 0.90088 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.19 71.98 0.66 -0.75 16 2 C -0.10 -1.29 2.72 -10.79 -0.03 -1.32 16 3 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.10 -1.23 5.20 30.60 0.16 -1.07 16 5 C -0.11 -1.89 5.05 30.59 0.15 -1.74 16 6 C -0.09 -1.97 1.68 -11.54 -0.02 -1.99 16 7 H 0.12 1.85 6.36 -2.39 -0.02 1.84 16 8 C 0.50 16.93 6.82 87.66 0.60 17.53 16 9 O -0.60 -26.95 15.51 -3.03 -0.05 -27.00 16 10 N -0.60 -19.81 2.94 -819.60 -2.41 -22.22 16 11 C 0.11 2.37 5.91 86.22 0.51 2.88 16 12 C -0.11 -2.48 5.89 30.36 0.18 -2.30 16 13 C 0.08 2.76 2.80 30.48 0.09 2.85 16 14 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 15 O -0.39 -13.83 9.70 -148.98 -1.45 -15.28 16 16 C 0.05 2.02 7.01 72.06 0.51 2.53 16 17 C 0.14 7.08 4.87 86.33 0.42 7.50 16 18 N -0.60 -30.98 2.72 -672.49 -1.83 -32.80 16 19 C -0.27 -15.16 9.65 84.03 0.81 -14.35 16 20 H 0.06 3.53 7.83 -2.91 -0.02 3.51 16 21 C -0.04 -2.22 5.31 84.86 0.45 -1.77 16 22 N -0.93 -55.43 10.74 21.65 0.23 -55.20 16 23 Si 0.97 45.83 29.55 68.60 2.03 47.86 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 25 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 26 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 27 C 0.14 5.79 2.95 44.94 0.13 5.92 16 28 H 0.06 2.64 7.99 -2.39 -0.02 2.63 16 29 C 0.13 5.48 5.63 86.42 0.49 5.96 16 30 C -0.10 -2.26 4.72 30.59 0.14 -2.12 16 31 C -0.10 -1.53 5.20 30.60 0.16 -1.37 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.78 16 37 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.08 1.26 7.71 -2.39 -0.02 1.24 16 39 H 0.12 1.67 5.15 -2.39 -0.01 1.66 16 40 H 0.08 1.80 7.96 -2.39 -0.02 1.78 16 41 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 43 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 44 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.00 -0.16 7.18 -2.38 -0.02 -0.18 16 46 H 0.07 3.98 6.15 -2.39 -0.01 3.96 16 47 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 48 H 0.05 2.15 6.59 -2.38 -0.02 2.14 16 49 H 0.04 1.97 7.02 -2.39 -0.02 1.95 16 50 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 51 H 0.05 1.26 7.88 -2.39 -0.02 1.24 16 52 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 53 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -74.18 391.35 2.80 -71.38 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.87 Total: 16.87 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: 5.41 Total: 16.39 kcal Atomic # 7 Polarization: -106.22 SS G_CDS: -4.01 Total: -110.23 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -1.49 Total: -42.28 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -74.18 2.80 -71.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074387597.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.178 kcal (2) G-P(sol) polarization free energy of solvation -74.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds