Wall clock time and date at job start Tue Mar 31 2020 21:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.99875 * 2 1 4 4 C 1.54321 * 109.88521 * 121.10419 * 2 1 3 5 5 H 1.09002 * 110.71615 * 259.97014 * 4 2 1 6 6 N 1.46498 * 110.72065 * 23.24109 * 4 2 1 7 7 C 1.36930 * 120.00353 * 262.71026 * 6 4 2 8 8 H 1.08002 * 120.00217 * 0.02562 * 7 6 4 9 9 C 1.38819 * 120.00507 * 179.97438 * 7 6 4 10 10 N 1.31615 * 119.99316 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00329 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47051 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47307 * 119.99939 * 11 9 7 14 14 H 1.48494 * 109.47066 * 240.00126 * 11 9 7 15 15 C 1.55154 * 102.94401 * 141.60818 * 4 2 1 16 16 C 1.54908 * 101.58134 * 324.49646 * 15 4 2 17 17 N 1.47031 * 109.88113 * 238.91209 * 2 1 3 18 18 C 1.34771 * 125.64979 * 61.67544 * 17 2 1 19 19 O 1.21279 * 119.99988 * 359.97438 * 18 17 2 20 20 C 1.50698 * 119.99868 * 179.97438 * 18 17 2 21 21 C 1.53004 * 109.47342 * 179.97438 * 20 18 17 22 22 H 1.09006 * 109.43548 * 304.99986 * 21 20 18 23 23 C 1.53072 * 109.44184 * 185.07546 * 21 20 18 24 24 C 1.53349 * 109.09450 * 180.52265 * 23 21 20 25 25 C 1.52843 * 108.73905 * 54.87294 * 24 23 21 26 26 C 1.53334 * 113.58029 * 175.75154 * 25 24 23 27 27 C 1.53853 * 86.95046 * 220.11738 * 26 25 24 28 28 C 1.53345 * 113.55580 * 77.76007 * 25 24 23 29 29 C 1.52763 * 112.67679 * 306.77735 * 25 24 23 30 30 O 1.42874 * 109.43919 * 64.91934 * 21 20 18 31 31 H 1.08999 * 109.46904 * 175.61736 * 1 2 3 32 32 H 1.08998 * 109.46946 * 295.61982 * 1 2 3 33 33 H 1.09001 * 109.46770 * 55.62000 * 1 2 3 34 34 H 0.97005 * 119.99715 * 82.70702 * 6 4 2 35 35 H 0.97004 * 120.00107 * 179.97438 * 10 9 7 36 36 H 1.09002 * 110.99994 * 206.41950 * 15 4 2 37 37 H 1.09002 * 111.00488 * 82.57374 * 15 4 2 38 38 H 1.09000 * 110.36558 * 155.84954 * 16 15 4 39 39 H 1.08996 * 110.36760 * 278.16949 * 16 15 4 40 40 H 1.08999 * 109.47130 * 300.00079 * 20 18 17 41 41 H 1.08999 * 109.47563 * 59.99833 * 20 18 17 42 42 H 1.08996 * 109.53526 * 300.41189 * 23 21 20 43 43 H 1.09001 * 109.53301 * 60.64021 * 23 21 20 44 44 H 1.09000 * 109.59050 * 174.64757 * 24 23 21 45 45 H 1.09000 * 109.59384 * 295.09145 * 24 23 21 46 46 H 1.09001 * 113.63189 * 334.63852 * 26 25 24 47 47 H 1.08997 * 113.63713 * 105.59808 * 26 25 24 48 48 H 1.08998 * 113.60159 * 270.54072 * 27 26 25 49 49 H 1.09007 * 113.59795 * 139.68244 * 27 26 25 50 50 H 1.08996 * 113.64323 * 254.41473 * 28 25 24 51 51 H 1.09009 * 113.63545 * 25.39486 * 28 25 24 52 52 H 1.08997 * 109.52562 * 173.53611 * 29 25 24 53 53 H 1.08997 * 109.52532 * 293.67661 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7497 1.2426 5 1 2.3531 -0.0462 2.0200 6 7 1.0473 -1.6857 1.7473 7 6 0.2337 -1.3211 2.7866 8 1 0.3345 -0.3433 3.2340 9 6 -0.7215 -2.2078 3.2645 10 7 -0.8454 -3.3988 2.7182 11 14 -1.8309 -1.7107 4.6828 12 1 -1.4921 -0.3313 5.1162 13 1 -3.2483 -1.7576 4.2425 14 1 -1.6337 -2.6480 5.8175 15 6 3.2876 -1.5143 0.6921 16 6 2.8145 -1.8794 -0.7371 17 7 2.0300 -0.7139 -1.1841 18 6 1.8085 -0.3610 -2.4658 19 8 1.1451 0.6224 -2.7180 20 6 2.3852 -1.1884 -3.5855 21 6 1.9874 -0.5754 -4.9298 22 1 0.9029 -0.4761 -4.9764 23 6 2.4650 -1.4840 -6.0654 24 6 2.0739 -0.8559 -7.4086 25 6 2.6320 0.5658 -7.4669 26 6 2.3928 1.2640 -8.8110 27 6 3.8155 1.8334 -8.6750 28 6 4.1321 0.6229 -7.7796 29 6 2.2262 1.4078 -6.2587 30 8 2.5891 0.7138 -5.0612 31 1 -0.3633 -1.0247 -0.0785 32 1 -0.3633 0.4444 0.9266 33 1 -0.3633 0.5803 -0.8482 34 1 0.9564 -2.5637 1.3451 35 1 -1.5126 -4.0186 3.0523 36 1 3.4852 -2.4112 1.2793 37 1 4.1655 -0.8689 0.6602 38 1 3.6715 -2.0337 -1.3926 39 1 2.1886 -2.7714 -0.7132 40 1 3.4718 -1.2066 -3.5015 41 1 1.9988 -2.2056 -3.5220 42 1 3.5485 -1.5914 -6.0150 43 1 1.9958 -2.4632 -5.9705 44 1 2.4921 -1.4465 -8.2237 45 1 0.9878 -0.8262 -7.4957 46 1 2.2760 0.5743 -9.6469 47 1 1.6125 2.0242 -8.7757 48 1 3.8554 2.7874 -8.1493 49 1 4.3737 1.8415 -9.6114 50 1 4.7497 0.8681 -6.9156 51 1 4.4971 -0.2443 -8.3302 52 1 2.7415 2.3676 -6.2939 53 1 1.1488 1.5719 -6.2743 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075061535.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:55 Heat of formation + Delta-G solvation = -71.444770 kcal Electronic energy + Delta-G solvation = -30519.212023 eV Core-core repulsion = 26583.607738 eV Total energy + Delta-G solvation = -3935.604285 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.60276 -40.99924 -39.01743 -37.90783 -35.71801 -34.32097 -33.32681 -32.32316 -31.83430 -30.42211 -28.22399 -26.79060 -26.55458 -25.82592 -25.25467 -24.15960 -23.05664 -21.76134 -21.12885 -19.70088 -19.46238 -19.30735 -17.87623 -17.53754 -17.18132 -16.77757 -16.39171 -16.28110 -16.18465 -15.47737 -15.30162 -15.14817 -15.08389 -14.77262 -14.73617 -14.42342 -14.02253 -13.87691 -13.53431 -13.50131 -13.23868 -13.15038 -13.02465 -12.89414 -12.80823 -12.70626 -12.37653 -12.29459 -12.25054 -12.14760 -12.00549 -11.82965 -11.75654 -11.65272 -11.49179 -11.37980 -10.97462 -10.94468 -10.80288 -10.65587 -10.25308 -9.51460 -8.98425 -7.91651 -5.17961 1.47093 1.49196 1.57086 1.78166 2.13291 2.57372 2.81198 3.39215 3.55714 3.60230 3.65703 3.72091 3.76865 3.88017 3.90806 3.98631 4.02985 4.13817 4.18340 4.27270 4.34304 4.43403 4.48746 4.51191 4.55965 4.59714 4.65095 4.69413 4.69747 4.77933 4.83153 4.86728 4.88663 4.89718 4.94397 5.03556 5.06705 5.09943 5.13184 5.14665 5.21299 5.26475 5.33385 5.33420 5.48631 5.50747 5.56680 5.57240 5.59401 6.30226 6.34361 6.74224 7.32439 7.38303 8.11218 8.35606 9.31438 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.027136 B = 0.002262 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.579081 B =12374.015960 C =12512.585867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.114 3.886 3 H 0.058 0.942 4 C 0.162 3.838 5 H 0.075 0.925 6 N -0.715 5.715 7 C -0.224 4.224 8 H 0.074 0.926 9 C -0.071 4.071 10 N -0.965 5.965 11 Si 0.960 3.040 12 H -0.268 1.268 13 H -0.301 1.301 14 H -0.295 1.295 15 C -0.132 4.132 16 C 0.103 3.897 17 N -0.611 5.611 18 C 0.517 3.483 19 O -0.581 6.581 20 C -0.122 4.122 21 C 0.106 3.894 22 H 0.037 0.963 23 C -0.140 4.140 24 C -0.104 4.104 25 C -0.121 4.121 26 C -0.126 4.126 27 C -0.141 4.141 28 C -0.122 4.122 29 C 0.085 3.915 30 O -0.386 6.386 31 H 0.036 0.964 32 H 0.049 0.951 33 H 0.029 0.971 34 H 0.376 0.624 35 H 0.248 0.752 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.060 0.940 40 H 0.120 0.880 41 H 0.127 0.873 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.058 0.942 46 H 0.094 0.906 47 H 0.064 0.936 48 H 0.076 0.924 49 H 0.078 0.922 50 H 0.058 0.942 51 H 0.091 0.909 52 H 0.093 0.907 53 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.685 3.819 -23.330 27.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.008 3.992 3 H 0.076 0.924 4 C 0.051 3.949 5 H 0.093 0.907 6 N -0.353 5.353 7 C -0.356 4.356 8 H 0.092 0.908 9 C -0.264 4.264 10 N -0.616 5.616 11 Si 0.791 3.209 12 H -0.193 1.193 13 H -0.229 1.229 14 H -0.222 1.222 15 C -0.171 4.171 16 C -0.019 4.019 17 N -0.344 5.344 18 C 0.308 3.692 19 O -0.461 6.461 20 C -0.161 4.161 21 C 0.048 3.952 22 H 0.055 0.945 23 C -0.178 4.178 24 C -0.141 4.141 25 C -0.121 4.121 26 C -0.164 4.164 27 C -0.179 4.179 28 C -0.159 4.159 29 C 0.009 3.991 30 O -0.305 6.305 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.208 0.792 35 H 0.057 0.943 36 H 0.106 0.894 37 H 0.117 0.883 38 H 0.127 0.873 39 H 0.079 0.921 40 H 0.138 0.862 41 H 0.145 0.855 42 H 0.100 0.900 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.077 0.923 46 H 0.113 0.887 47 H 0.083 0.917 48 H 0.094 0.906 49 H 0.096 0.904 50 H 0.077 0.923 51 H 0.110 0.890 52 H 0.111 0.889 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.379 4.535 -23.228 27.186 hybrid contribution -1.596 -0.076 0.825 1.798 sum 11.783 4.459 -22.403 25.703 Atomic orbital electron populations 1.21535 0.96135 1.00279 0.99311 1.22400 0.94052 0.95807 0.86988 0.92437 1.21451 0.89127 0.92064 0.92233 0.90663 1.42400 1.39205 1.15372 1.38301 1.19547 1.10082 0.98640 1.07378 0.90772 1.25379 1.01769 0.96680 1.02555 1.69788 1.38350 1.07949 1.45517 0.85252 0.78464 0.77647 0.79517 1.19257 1.22881 1.22186 1.23083 0.97384 1.01690 0.94914 1.22434 0.95382 0.87633 0.96437 1.48727 1.52213 1.28780 1.04704 1.20917 0.79978 0.85272 0.83059 1.90650 1.41927 1.29691 1.83796 1.21784 1.04226 0.99868 0.90261 1.21780 0.95876 0.83753 0.93804 0.94455 1.22166 1.02838 0.98994 0.93773 1.21547 1.00531 0.94509 0.97542 1.22214 0.98104 0.96314 0.95464 1.22877 0.97507 0.99836 0.96138 1.22870 0.96793 0.97818 1.00376 1.22841 0.94493 0.99089 0.99479 1.22304 0.98692 0.94927 0.83200 1.87962 1.70644 1.30664 1.41251 0.94441 0.93176 0.95237 0.79179 0.94287 0.89377 0.88304 0.87346 0.92149 0.86155 0.85549 0.90016 0.89291 0.89518 0.92334 0.88703 0.91690 0.90578 0.90373 0.92304 0.89004 0.88933 0.94450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.01 8.08 71.98 0.58 -4.43 16 2 C 0.11 4.27 3.44 45.34 0.16 4.42 16 3 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 4 C 0.16 5.91 3.52 46.18 0.16 6.07 16 5 H 0.08 2.72 8.05 -2.39 -0.02 2.71 16 6 N -0.71 -33.09 3.81 -317.34 -1.21 -34.30 16 7 C -0.22 -11.77 8.62 84.04 0.72 -11.04 16 8 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 9 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 10 N -0.97 -57.18 13.06 21.65 0.28 -56.89 16 11 Si 0.96 45.70 29.55 68.60 2.03 47.73 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 13 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 14 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 15 C -0.13 -3.54 6.70 31.98 0.21 -3.33 16 16 C 0.10 2.62 6.62 86.85 0.57 3.19 16 17 N -0.61 -19.73 3.06 -788.06 -2.42 -22.14 16 18 C 0.52 17.18 7.52 87.66 0.66 17.84 16 19 O -0.58 -24.33 14.52 10.87 0.16 -24.17 16 20 C -0.12 -2.75 4.41 29.85 0.13 -2.62 16 21 C 0.11 2.49 2.13 30.62 0.07 2.56 16 22 H 0.04 1.06 7.95 -2.38 -0.02 1.04 16 23 C -0.14 -2.20 5.36 30.74 0.16 -2.04 16 24 C -0.10 -1.52 5.21 30.66 0.16 -1.36 16 25 C -0.12 -1.92 0.85 -52.09 -0.04 -1.96 16 26 C -0.13 -1.60 7.23 30.99 0.22 -1.38 16 27 C -0.14 -1.73 7.73 31.17 0.24 -1.49 16 28 C -0.12 -1.69 7.12 31.00 0.22 -1.47 16 29 C 0.09 1.89 5.93 71.90 0.43 2.32 16 30 O -0.39 -10.57 9.64 -135.09 -1.30 -11.87 16 31 H 0.04 1.81 7.54 -2.39 -0.02 1.79 16 32 H 0.05 2.28 7.33 -2.39 -0.02 2.27 16 33 H 0.03 1.31 7.01 -2.39 -0.02 1.29 16 34 H 0.38 18.77 7.85 -92.70 -0.73 18.04 16 35 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 36 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.11 1.88 7.47 -2.39 -0.02 1.87 16 39 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.12 2.17 7.85 -2.39 -0.02 2.15 16 41 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.08 1.17 8.12 -2.39 -0.02 1.15 16 43 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.09 0.96 8.03 -2.39 -0.02 0.94 16 45 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.09 0.98 8.09 -2.39 -0.02 0.96 16 47 H 0.06 0.86 8.09 -2.39 -0.02 0.84 16 48 H 0.08 0.99 7.64 -2.39 -0.02 0.97 16 49 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 50 H 0.06 0.98 8.09 -2.39 -0.02 0.96 16 51 H 0.09 1.04 8.02 -2.38 -0.02 1.02 16 52 H 0.09 1.93 7.34 -2.39 -0.02 1.91 16 53 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -69.72 404.84 2.82 -66.90 By element: Atomic # 1 Polarization: 32.80 SS G_CDS: 0.15 Total: 32.95 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 5.13 Total: 1.79 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -3.34 Total: -113.33 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -1.14 Total: -36.04 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -69.72 2.82 -66.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075061535.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.541 kcal (2) G-P(sol) polarization free energy of solvation -69.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds