Wall clock time and date at job start Tue Mar 31 2020 19:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 110.32020 * 2 1 4 4 C 1.55025 * 110.35648 * 122.20885 * 2 1 3 5 5 C 1.54529 * 101.52915 * 155.34891 * 4 2 1 6 6 C 1.53680 * 103.64588 * 325.16935 * 5 4 2 7 7 N 1.47179 * 107.11226 * 21.54932 * 6 5 4 8 8 C 1.34782 * 125.66301 * 181.52694 * 7 6 5 9 9 O 1.21278 * 120.00139 * 176.00491 * 8 7 6 10 10 C 1.50696 * 119.99963 * 356.00770 * 8 7 6 11 11 C 1.53177 * 109.54194 * 285.76175 * 10 8 7 12 12 C 1.53097 * 109.16200 * 183.15190 * 11 10 8 13 13 O 1.42899 * 109.41328 * 57.61103 * 12 11 10 14 14 C 1.42902 * 114.09528 * 298.83883 * 13 12 11 15 15 C 1.53088 * 109.41619 * 61.15984 * 14 13 12 16 16 C 1.52281 * 110.16928 * 83.59552 * 5 4 2 17 17 C 1.53319 * 109.41543 * 62.84911 * 16 5 4 18 18 N 1.46927 * 108.70646 * 53.52644 * 17 16 5 19 19 C 1.36935 * 120.57196 * 125.76319 * 18 17 16 20 20 H 1.08003 * 120.00079 * 332.24868 * 19 18 17 21 21 C 1.38816 * 120.00177 * 152.23923 * 19 18 17 22 22 N 1.31621 * 119.99405 * 144.08202 * 21 19 18 23 23 Si 1.86792 * 120.00158 * 324.08119 * 21 19 18 24 24 H 1.48496 * 109.47489 * 269.99659 * 23 21 19 25 25 H 1.48502 * 109.47002 * 30.00163 * 23 21 19 26 26 H 1.48501 * 109.46998 * 149.99613 * 23 21 19 27 27 C 1.46931 * 118.86140 * 306.03071 * 18 17 16 28 28 C 1.52274 * 110.17214 * 206.72859 * 5 4 2 29 29 H 1.09005 * 109.47199 * 297.79337 * 1 2 3 30 30 H 1.08994 * 109.47406 * 57.79434 * 1 2 3 31 31 H 1.08999 * 109.47565 * 177.79430 * 1 2 3 32 32 H 1.09002 * 111.01113 * 37.28065 * 4 2 1 33 33 H 1.09007 * 111.01292 * 273.41393 * 4 2 1 34 34 H 1.09002 * 109.91142 * 140.92084 * 6 5 4 35 35 H 1.09001 * 109.91121 * 262.18042 * 6 5 4 36 36 H 1.09003 * 109.54407 * 46.02825 * 10 8 7 37 37 H 1.08993 * 109.52412 * 303.06021 * 11 10 8 38 38 H 1.09006 * 109.52524 * 63.24744 * 11 10 8 39 39 H 1.08999 * 109.48387 * 297.62452 * 12 11 10 40 40 H 1.09001 * 109.47788 * 177.59315 * 12 11 10 41 41 H 1.09000 * 109.48064 * 301.17744 * 14 13 12 42 42 H 1.09001 * 109.48835 * 181.15232 * 14 13 12 43 43 H 1.08995 * 109.52327 * 182.48155 * 15 14 13 44 44 H 1.09007 * 109.52018 * 62.29714 * 15 14 13 45 45 H 1.09002 * 109.47549 * 302.86766 * 16 5 4 46 46 H 1.08988 * 109.48015 * 182.83540 * 16 5 4 47 47 H 1.09002 * 109.60195 * 293.75425 * 17 16 5 48 48 H 1.09006 * 109.72277 * 173.36746 * 17 16 5 49 49 H 0.96996 * 120.00434 * 354.90145 * 22 21 19 50 50 H 1.09007 * 109.59744 * 173.73392 * 27 18 17 51 51 H 1.09002 * 109.59910 * 294.20070 * 27 18 17 52 52 H 1.08992 * 109.48059 * 57.13837 * 28 5 4 53 53 H 1.09005 * 109.47738 * 177.15860 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9084 1.0221 0.0000 4 6 2.0692 -0.7747 1.2298 5 6 3.4668 -1.2082 0.7331 6 6 3.2521 -1.4768 -0.7647 7 7 2.0451 -0.7377 -1.1686 8 6 1.5006 -0.7358 -2.4015 9 8 0.4605 -0.1460 -2.6042 10 6 2.1844 -1.4664 -3.5283 11 6 3.4157 -0.6750 -3.9796 12 6 4.0582 -1.3837 -5.1749 13 8 3.0980 -1.5073 -6.2260 14 6 1.9464 -2.2778 -5.8765 15 6 1.2191 -1.6051 -4.7094 16 6 4.4700 -0.0811 0.9386 17 6 4.6038 0.2153 2.4369 18 7 4.9198 -1.0364 3.1385 19 6 6.0170 -1.1201 3.9535 20 1 6.8764 -0.4928 3.7682 21 6 6.0247 -2.0112 5.0179 22 7 7.1383 -2.6284 5.3513 23 14 4.4546 -2.3340 5.9770 24 1 4.3570 -1.3732 7.1049 25 1 3.2831 -2.1652 5.0800 26 1 4.4754 -3.7206 6.5083 27 6 4.0416 -2.1986 2.9459 28 6 3.9080 -2.4776 1.4491 29 1 -0.3634 0.4792 0.9091 30 1 -0.3634 0.5477 -0.8695 31 1 -0.3634 -1.0269 -0.0396 32 1 1.4461 -1.6416 1.4496 33 1 2.1483 -0.1218 2.0991 34 1 4.1121 -1.1217 -1.3325 35 1 3.1077 -2.5439 -0.9336 36 1 2.4897 -2.4562 -3.1888 37 1 3.1152 0.3313 -4.2711 38 1 4.1331 -0.6190 -3.1607 39 1 4.3951 -2.3750 -4.8718 40 1 4.9101 -0.8021 -5.5273 41 1 2.2556 -3.2808 -5.5826 42 1 1.2769 -2.3406 -6.7344 43 1 0.3654 -2.2142 -4.4126 44 1 0.8741 -0.6175 -5.0158 45 1 4.1230 0.8131 0.4207 46 1 5.4390 -0.3797 0.5392 47 1 3.6647 0.6193 2.8150 48 1 5.4041 0.9374 2.5990 49 1 7.9350 -2.5181 4.8091 50 1 4.4727 -3.0686 3.4413 51 1 3.0578 -1.9868 3.3645 52 1 3.1678 -3.2614 1.2887 53 1 4.8714 -2.8012 1.0548 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086896385.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:10 Heat of formation + Delta-G solvation = -83.867463 kcal Electronic energy + Delta-G solvation = -31513.263577 eV Core-core repulsion = 27577.120604 eV Total energy + Delta-G solvation = -3936.142973 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.99044 -40.57693 -39.36488 -37.57943 -34.94335 -34.87050 -32.97377 -32.65769 -31.98706 -31.92236 -28.74473 -27.25825 -26.79032 -25.23122 -24.54946 -24.38731 -23.13740 -22.61229 -21.33120 -20.04832 -19.93405 -18.83462 -17.97056 -17.60696 -17.04491 -16.93154 -16.55622 -16.13767 -15.96867 -15.75973 -15.55545 -15.43115 -15.21920 -14.84137 -14.72636 -14.56098 -14.27926 -14.05413 -13.99660 -13.71929 -13.56146 -13.27966 -13.13258 -13.05329 -12.86907 -12.52508 -12.41071 -12.32254 -12.24507 -12.15560 -12.03043 -11.74979 -11.68899 -11.56861 -11.43662 -11.28369 -11.07871 -11.01336 -10.77864 -10.38459 -10.31784 -9.64971 -8.94917 -8.53720 -5.38561 1.53769 1.57196 1.59012 1.77334 1.93105 2.62280 2.95604 2.99917 3.31256 3.42742 3.53852 3.62895 3.70296 3.77079 3.79624 3.98623 4.09198 4.13555 4.21917 4.26854 4.28197 4.41962 4.42247 4.49835 4.51188 4.56574 4.60073 4.63212 4.70131 4.73598 4.75251 4.78390 4.81430 4.82937 4.88015 4.97496 5.04526 5.07059 5.09136 5.12281 5.20214 5.22640 5.23859 5.28150 5.31235 5.34146 5.50886 5.58145 5.88902 6.25069 6.31898 6.53358 6.96217 7.14337 7.69555 8.19365 8.83147 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018996 B = 0.003028 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.630302 B = 9243.546257 C =10001.485143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 H 0.072 0.928 4 C -0.116 4.116 5 C -0.053 4.053 6 C 0.113 3.887 7 N -0.609 5.609 8 C 0.531 3.469 9 O -0.573 6.573 10 C -0.102 4.102 11 C -0.141 4.141 12 C 0.062 3.938 13 O -0.403 6.403 14 C 0.062 3.938 15 C -0.132 4.132 16 C -0.107 4.107 17 C 0.141 3.859 18 N -0.612 5.612 19 C -0.346 4.346 20 H 0.026 0.974 21 C -0.048 4.048 22 N -0.939 5.939 23 Si 1.059 2.941 24 H -0.301 1.301 25 H -0.232 1.232 26 H -0.301 1.301 27 C 0.140 3.860 28 C -0.113 4.113 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.107 0.893 41 H 0.068 0.932 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.060 0.940 45 H 0.074 0.926 46 H 0.054 0.946 47 H 0.037 0.963 48 H 0.040 0.960 49 H 0.252 0.748 50 H 0.039 0.961 51 H 0.042 0.958 52 H 0.082 0.918 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.002 0.442 -20.706 23.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.031 3.969 3 H 0.090 0.910 4 C -0.154 4.154 5 C -0.054 4.054 6 C -0.010 4.010 7 N -0.342 5.342 8 C 0.321 3.679 9 O -0.453 6.453 10 C -0.124 4.124 11 C -0.179 4.179 12 C -0.015 4.015 13 O -0.323 6.323 14 C -0.015 4.015 15 C -0.170 4.170 16 C -0.146 4.146 17 C 0.016 3.984 18 N -0.337 5.337 19 C -0.475 4.475 20 H 0.044 0.956 21 C -0.246 4.246 22 N -0.579 5.579 23 Si 0.885 3.115 24 H -0.229 1.229 25 H -0.156 1.156 26 H -0.228 1.228 27 C 0.015 3.985 28 C -0.152 4.152 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.130 0.870 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.125 0.875 41 H 0.087 0.913 42 H 0.125 0.875 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.092 0.908 46 H 0.072 0.928 47 H 0.054 0.946 48 H 0.059 0.941 49 H 0.061 0.939 50 H 0.058 0.942 51 H 0.059 0.941 52 H 0.101 0.899 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.154 0.058 -19.788 23.761 hybrid contribution 1.310 0.955 -0.334 1.656 sum -11.843 1.014 -20.122 23.371 Atomic orbital electron populations 1.22019 0.94020 1.02072 1.02705 1.21957 0.94861 0.95497 0.84541 0.90963 1.22922 0.94995 1.00661 0.96791 1.20833 0.95192 0.95864 0.93483 1.22228 0.87014 0.97100 0.94611 1.48711 1.28370 1.48170 1.08993 1.20647 0.84135 0.80469 0.82624 1.90631 1.24749 1.46827 1.83121 1.21381 0.96932 1.00718 0.93324 1.22146 0.96308 0.99447 1.00010 1.22700 0.91188 1.00827 0.86742 1.87924 1.31673 1.74044 1.38611 1.22714 0.87049 0.93933 0.97758 1.21988 0.98089 1.02342 0.94629 1.21751 0.98219 0.97767 0.96860 1.21128 0.97996 0.87739 0.91568 1.44386 1.29283 1.07759 1.52231 1.19883 0.93061 1.24699 1.09875 0.95626 1.27140 1.04730 0.95542 0.97223 1.70999 1.03650 1.38769 1.44521 0.84082 0.75800 0.75120 0.76495 1.22947 1.15574 1.22789 1.21333 0.93193 0.89050 0.94892 1.21779 1.01168 0.96310 0.95946 0.90943 0.91892 0.93280 0.90112 0.89778 0.89952 0.89671 0.86977 0.92138 0.89164 0.91187 0.87452 0.91340 0.87497 0.90300 0.92162 0.90785 0.92761 0.94558 0.94105 0.93869 0.94243 0.94076 0.89907 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 8.54 71.98 0.62 -2.80 16 2 C 0.13 2.98 3.46 45.49 0.16 3.14 16 3 H 0.07 1.65 7.74 -2.39 -0.02 1.63 16 4 C -0.12 -2.63 4.35 31.81 0.14 -2.49 16 5 C -0.05 -1.26 0.55 -51.91 -0.03 -1.29 16 6 C 0.11 2.11 5.35 86.48 0.46 2.57 16 7 N -0.61 -12.92 3.25 -788.67 -2.56 -15.48 16 8 C 0.53 12.20 6.88 87.65 0.60 12.80 16 9 O -0.57 -17.07 13.57 -3.02 -0.04 -17.11 16 10 C -0.10 -1.71 1.99 -11.43 -0.02 -1.74 16 11 C -0.14 -2.14 5.34 30.69 0.16 -1.97 16 12 C 0.06 0.82 6.84 72.01 0.49 1.31 16 13 O -0.40 -7.05 10.77 -148.98 -1.60 -8.66 16 14 C 0.06 0.84 6.84 72.01 0.49 1.33 16 15 C -0.13 -2.23 4.87 30.68 0.15 -2.08 16 16 C -0.11 -2.92 4.74 30.46 0.14 -2.77 16 17 C 0.14 4.99 6.19 86.40 0.53 5.53 16 18 N -0.61 -26.76 2.71 -699.48 -1.89 -28.65 16 19 C -0.35 -18.89 9.70 84.03 0.82 -18.08 16 20 H 0.03 1.56 8.06 -2.91 -0.02 1.54 16 21 C -0.05 -2.75 4.82 84.86 0.41 -2.34 16 22 N -0.94 -57.98 13.70 21.65 0.30 -57.69 16 23 Si 1.06 49.49 26.99 68.60 1.85 51.34 16 24 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 25 H -0.23 -9.29 4.73 99.48 0.47 -8.82 16 26 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 27 C 0.14 5.30 4.04 86.24 0.35 5.65 16 28 C -0.11 -3.18 4.70 30.30 0.14 -3.04 16 29 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.06 1.69 6.09 -2.39 -0.01 1.67 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.77 7.92 -2.39 -0.02 1.75 16 33 H 0.08 2.06 6.08 -2.38 -0.01 2.04 16 34 H 0.08 1.37 6.02 -2.39 -0.01 1.36 16 35 H 0.09 1.37 7.64 -2.39 -0.02 1.35 16 36 H 0.11 1.46 7.72 -2.39 -0.02 1.44 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.09 1.20 6.19 -2.38 -0.01 1.19 16 39 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.06 1.29 7.85 -2.38 -0.02 1.28 16 45 H 0.07 1.74 7.47 -2.39 -0.02 1.73 16 46 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.04 1.20 6.47 -2.39 -0.02 1.19 16 48 H 0.04 1.56 7.93 -2.38 -0.02 1.54 16 49 H 0.25 15.69 8.73 -92.71 -0.81 14.88 16 50 H 0.04 1.70 5.77 -2.38 -0.01 1.68 16 51 H 0.04 1.48 6.05 -2.39 -0.01 1.46 16 52 H 0.08 1.92 8.11 -2.39 -0.02 1.90 16 53 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -69.15 382.41 2.27 -66.88 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 0.61 Total: 15.64 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: 5.62 Total: -6.27 kcal Atomic # 7 Polarization: -97.66 SS G_CDS: -4.16 Total: -101.82 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -1.64 Total: -25.77 kcal Atomic # 14 Polarization: 49.49 SS G_CDS: 1.85 Total: 51.34 kcal Total: -69.15 2.27 -66.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086896385.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.986 kcal (2) G-P(sol) polarization free energy of solvation -69.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds