Wall clock time and date at job start Tue Mar 31 2020 19:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.98739 * 2 1 4 4 C 1.54470 * 110.00601 * 238.98772 * 2 1 3 5 5 C 1.54362 * 102.96186 * 219.39580 * 4 2 1 6 6 C 1.54139 * 102.48003 * 34.41582 * 5 4 2 7 7 N 1.47090 * 109.87811 * 121.08202 * 2 1 3 8 8 C 1.34775 * 125.62733 * 298.42054 * 7 2 1 9 9 O 1.21279 * 120.00332 * 359.72506 * 8 7 2 10 10 C 1.50701 * 119.99613 * 179.71770 * 8 7 2 11 11 C 1.52996 * 109.47096 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.87346 * 306.01105 * 11 10 8 13 13 C 1.54101 * 109.88195 * 185.00262 * 11 10 8 14 14 C 1.54811 * 104.18768 * 238.40064 * 13 11 10 15 15 C 1.54989 * 102.09238 * 339.11377 * 14 13 11 16 16 O 1.43747 * 110.00232 * 67.09899 * 11 10 8 17 17 C 1.52104 * 110.56891 * 152.37396 * 5 4 2 18 18 C 1.53341 * 109.44563 * 182.79518 * 17 5 4 19 19 N 1.46935 * 108.68786 * 306.70032 * 18 17 5 20 20 C 1.36930 * 120.55470 * 234.36439 * 19 18 17 21 21 H 1.07998 * 120.00385 * 152.40788 * 20 19 18 22 22 C 1.38821 * 120.00071 * 332.41255 * 20 19 18 23 23 N 1.31611 * 119.99944 * 159.35881 * 22 20 19 24 24 Si 1.86796 * 119.99838 * 339.35820 * 22 20 19 25 25 H 1.48498 * 109.47357 * 93.27042 * 24 22 20 26 26 H 1.48500 * 109.46945 * 213.27345 * 24 22 20 27 27 H 1.48507 * 109.46960 * 333.27005 * 24 22 20 28 28 C 1.46941 * 118.89447 * 54.34610 * 19 18 17 29 29 C 1.52111 * 110.54877 * 276.46368 * 5 4 2 30 30 H 1.09004 * 109.47298 * 300.36862 * 1 2 3 31 31 H 1.08997 * 109.47385 * 60.37043 * 1 2 3 32 32 H 1.09008 * 109.46686 * 180.37532 * 1 2 3 33 33 H 1.08998 * 110.88901 * 100.92580 * 4 2 1 34 34 H 1.09007 * 110.49346 * 337.68023 * 4 2 1 35 35 H 1.08999 * 110.37904 * 205.09136 * 6 5 4 36 36 H 1.08997 * 110.37462 * 82.74010 * 6 5 4 37 37 H 1.09007 * 109.46925 * 60.00172 * 10 8 7 38 38 H 1.08997 * 109.47565 * 300.00436 * 10 8 7 39 39 H 1.08994 * 110.49133 * 119.72030 * 13 11 10 40 40 H 1.08998 * 110.48540 * 357.06980 * 13 11 10 41 41 H 1.08998 * 110.90883 * 97.31327 * 14 13 11 42 42 H 1.09007 * 110.90374 * 220.91925 * 14 13 11 43 43 H 1.09005 * 110.61955 * 155.52715 * 15 14 13 44 44 H 1.08998 * 110.62214 * 278.52279 * 15 14 13 45 45 H 1.09000 * 109.47379 * 302.78733 * 17 5 4 46 46 H 1.09005 * 109.47703 * 62.80535 * 17 5 4 47 47 H 1.09003 * 109.60421 * 186.94656 * 18 17 5 48 48 H 1.08996 * 109.60383 * 66.46143 * 18 17 5 49 49 H 0.97000 * 120.00106 * 180.02562 * 23 22 20 50 50 H 1.08995 * 109.59810 * 185.88991 * 28 19 18 51 51 H 1.09000 * 109.60209 * 65.40376 * 28 19 18 52 52 H 1.08992 * 109.48057 * 297.17938 * 29 5 4 53 53 H 1.09007 * 109.47498 * 57.20151 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 6 2.0585 -0.7478 -1.2440 5 6 3.2693 -1.5288 -0.6901 6 6 2.8116 -1.8837 0.7384 7 7 2.0301 -0.7141 1.1847 8 6 1.8068 -0.3617 2.4662 9 8 1.1463 0.6239 2.7178 10 6 2.3776 -1.1924 3.5865 11 6 1.9788 -0.5794 4.9303 12 1 2.2724 0.4699 4.9606 13 6 2.6600 -1.3474 6.0796 14 6 1.4827 -1.8518 6.9492 15 6 0.3385 -0.8918 6.5350 16 8 0.5588 -0.6953 5.1216 17 6 3.5098 -2.7903 -1.5052 18 6 4.6719 -3.5806 -0.8918 19 7 5.8313 -2.6874 -0.7607 20 6 7.0393 -3.0302 -1.3067 21 1 7.7329 -2.2600 -1.6102 22 6 7.3726 -4.3679 -1.4703 23 7 8.3048 -4.7131 -2.3329 24 14 6.4980 -5.6778 -0.4660 25 1 5.3405 -6.2008 -1.2354 26 1 7.4399 -6.7879 -0.1730 27 1 6.0184 -5.0861 0.8088 28 6 5.6726 -1.4200 -0.0343 29 6 4.5048 -0.6423 -0.6529 30 1 -0.3634 0.5196 0.8867 31 1 -0.3634 0.5080 -0.8932 32 1 -0.3633 -1.0277 0.0067 33 1 2.3728 -0.0450 -2.0156 34 1 1.3015 -1.4314 -1.6285 35 1 3.6745 -2.0335 1.3872 36 1 2.1857 -2.7759 0.7256 37 1 3.4644 -1.2146 3.5051 38 1 1.9876 -2.2081 3.5209 39 1 3.3020 -0.6813 6.6558 40 1 3.2334 -2.1882 5.6893 41 1 1.2323 -2.8839 6.7041 42 1 1.7112 -1.7496 8.0101 43 1 -0.6329 -1.3537 6.7114 44 1 0.4180 0.0540 7.0710 45 1 2.6092 -3.4044 -1.4987 46 1 3.7569 -2.5183 -2.5314 47 1 4.9274 -4.4183 -1.5408 48 1 4.3832 -3.9516 0.0915 49 1 8.5374 -5.6478 -2.4475 50 1 6.5876 -0.8337 -0.1180 51 1 5.4609 -1.6241 1.0153 52 1 4.7660 -0.3401 -1.6670 53 1 4.2987 0.2431 -0.0513 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086902896.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:54 Heat of formation + Delta-G solvation = -81.337299 kcal Electronic energy + Delta-G solvation = -31424.945781 eV Core-core repulsion = 27488.912524 eV Total energy + Delta-G solvation = -3936.033257 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.83080 -40.55957 -39.45360 -37.63341 -34.76067 -33.79539 -33.05707 -32.85581 -32.00124 -31.94141 -28.91728 -27.63882 -26.79002 -25.75833 -24.55077 -23.54144 -22.87980 -22.34126 -21.62251 -20.27080 -19.64289 -18.48088 -18.12393 -17.53503 -17.15742 -16.92898 -16.79633 -16.31470 -15.97180 -15.66860 -15.35575 -15.26963 -15.13688 -14.87876 -14.49864 -14.33083 -14.26254 -14.12929 -13.76028 -13.48829 -13.45791 -13.31484 -13.12364 -13.00313 -12.81478 -12.57410 -12.51756 -12.31618 -12.18938 -12.18462 -12.08033 -12.00441 -11.93485 -11.61018 -11.56498 -11.49937 -11.11734 -11.08219 -10.69870 -10.63040 -10.58629 -9.60748 -8.85783 -8.12071 -5.43418 1.34319 1.45838 1.54944 1.68673 2.00608 2.46317 2.94523 3.10572 3.38550 3.40401 3.48915 3.62136 3.74858 3.80656 3.93650 4.01777 4.12692 4.13218 4.14681 4.25746 4.29432 4.38195 4.43790 4.44817 4.48508 4.57757 4.61746 4.65262 4.71069 4.75191 4.79056 4.81078 4.82743 4.87272 4.92459 4.93683 4.98033 5.05502 5.09913 5.11218 5.20395 5.22010 5.22718 5.28193 5.29285 5.39200 5.48546 5.55265 5.92068 6.02925 6.17266 6.57004 6.97679 7.22401 7.68300 8.07568 9.08165 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012381 B = 0.003610 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.898376 B = 7753.779135 C = 9252.051492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.134 3.866 3 H 0.063 0.937 4 C -0.108 4.108 5 C -0.055 4.055 6 C 0.108 3.892 7 N -0.612 5.612 8 C 0.526 3.474 9 O -0.572 6.572 10 C -0.136 4.136 11 C 0.091 3.909 12 H 0.056 0.944 13 C -0.150 4.150 14 C -0.149 4.149 15 C 0.035 3.965 16 O -0.394 6.394 17 C -0.109 4.109 18 C 0.119 3.881 19 N -0.617 5.617 20 C -0.246 4.246 21 H 0.046 0.954 22 C -0.038 4.038 23 N -0.961 5.961 24 Si 0.948 3.052 25 H -0.273 1.273 26 H -0.317 1.317 27 H -0.253 1.253 28 C 0.145 3.855 29 C -0.107 4.107 30 H 0.042 0.958 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.122 0.878 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.062 0.938 45 H 0.087 0.913 46 H 0.059 0.941 47 H 0.047 0.953 48 H 0.040 0.960 49 H 0.260 0.740 50 H 0.048 0.952 51 H 0.039 0.961 52 H 0.056 0.944 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.337 5.958 14.283 23.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.031 3.969 3 H 0.081 0.919 4 C -0.146 4.146 5 C -0.056 4.056 6 C -0.014 4.014 7 N -0.346 5.346 8 C 0.316 3.684 9 O -0.451 6.451 10 C -0.175 4.175 11 C 0.032 3.968 12 H 0.074 0.926 13 C -0.188 4.188 14 C -0.186 4.186 15 C -0.042 4.042 16 O -0.314 6.314 17 C -0.148 4.148 18 C -0.006 4.006 19 N -0.342 5.342 20 C -0.376 4.376 21 H 0.064 0.936 22 C -0.232 4.232 23 N -0.608 5.608 24 Si 0.777 3.223 25 H -0.199 1.199 26 H -0.246 1.246 27 H -0.177 1.177 28 C 0.021 3.979 29 C -0.146 4.146 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.140 0.860 38 H 0.127 0.873 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.098 0.902 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.080 0.920 45 H 0.105 0.895 46 H 0.078 0.922 47 H 0.065 0.935 48 H 0.058 0.942 49 H 0.069 0.931 50 H 0.067 0.933 51 H 0.057 0.943 52 H 0.075 0.925 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.773 6.427 14.288 23.692 hybrid contribution 0.503 -0.673 0.104 0.846 sum -17.270 5.755 14.392 23.206 Atomic orbital electron populations 1.22034 0.94514 1.02139 1.02288 1.21608 0.94562 0.95965 0.84784 0.91902 1.22739 0.96678 0.99346 0.95855 1.20879 0.94878 0.95686 0.94169 1.22478 0.95170 0.88177 0.95596 1.48733 1.52327 1.28577 1.04913 1.20655 0.79743 0.85096 0.82923 1.90670 1.41445 1.29317 1.83711 1.21987 1.03359 1.00580 0.91584 1.22483 0.81638 0.98690 0.93941 0.92560 1.23044 0.98775 1.01086 0.95865 1.23125 0.94160 1.00030 1.01296 1.23755 1.00320 0.98793 0.81297 1.88972 1.23088 1.93905 1.25407 1.21750 0.98247 0.95709 0.99117 1.21468 0.87693 0.93235 0.98182 1.44436 1.06056 1.20474 1.63196 1.18841 0.94702 0.91517 1.32530 0.93575 1.25938 0.98238 0.99483 0.99563 1.69981 1.36874 1.17420 1.36518 0.85891 0.76962 0.78499 0.80996 1.19940 1.24639 1.17675 1.21116 0.96881 0.86068 0.93880 1.21674 0.94376 0.97404 1.01141 0.93923 0.90056 0.92327 0.89173 0.88950 0.90073 0.90093 0.85961 0.87302 0.89228 0.89046 0.90177 0.88309 0.88280 0.91989 0.89490 0.92190 0.93508 0.94190 0.93104 0.93294 0.94326 0.92511 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 9.10 71.98 0.66 -2.65 16 2 C 0.13 3.05 3.11 45.38 0.14 3.19 16 3 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 4 C -0.11 -2.18 5.43 31.56 0.17 -2.01 16 5 C -0.06 -1.36 0.54 -51.92 -0.03 -1.39 16 6 C 0.11 2.46 4.66 86.56 0.40 2.87 16 7 N -0.61 -14.89 3.06 -788.78 -2.41 -17.30 16 8 C 0.53 14.36 7.54 87.66 0.66 15.02 16 9 O -0.57 -19.85 14.56 7.75 0.11 -19.74 16 10 C -0.14 -2.82 4.21 29.85 0.13 -2.70 16 11 C 0.09 1.93 2.92 30.97 0.09 2.02 16 12 H 0.06 1.37 7.93 -2.39 -0.02 1.35 16 13 C -0.15 -2.12 6.64 31.59 0.21 -1.91 16 14 C -0.15 -1.85 7.15 31.89 0.23 -1.62 16 15 C 0.03 0.58 7.72 72.66 0.56 1.14 16 16 O -0.39 -10.06 10.59 -138.20 -1.46 -11.52 16 17 C -0.11 -3.09 4.83 30.41 0.15 -2.94 16 18 C 0.12 4.45 3.94 86.41 0.34 4.79 16 19 N -0.62 -26.76 2.75 -698.46 -1.92 -28.68 16 20 C -0.25 -13.47 10.03 84.04 0.84 -12.62 16 21 H 0.05 2.81 8.06 -2.91 -0.02 2.79 16 22 C -0.04 -2.15 5.23 84.87 0.44 -1.71 16 23 N -0.96 -59.60 13.97 21.65 0.30 -59.29 16 24 Si 0.95 44.33 24.36 68.60 1.67 46.00 16 25 H -0.27 -11.94 6.63 99.48 0.66 -11.28 16 26 H -0.32 -15.40 7.11 99.48 0.71 -14.69 16 27 H -0.25 -10.91 6.64 99.48 0.66 -10.25 16 28 C 0.15 5.10 6.20 86.41 0.54 5.63 16 29 C -0.11 -3.03 4.83 30.42 0.15 -2.89 16 30 H 0.04 1.16 6.89 -2.39 -0.02 1.14 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.09 1.70 8.01 -2.39 -0.02 1.68 16 34 H 0.09 1.61 7.69 -2.38 -0.02 1.60 16 35 H 0.08 1.90 5.56 -2.39 -0.01 1.89 16 36 H 0.08 1.67 7.97 -2.39 -0.02 1.65 16 37 H 0.12 2.09 7.86 -2.38 -0.02 2.07 16 38 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.09 1.13 7.70 -2.39 -0.02 1.11 16 41 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 43 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 44 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 45 H 0.09 1.99 8.09 -2.39 -0.02 1.97 16 46 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 47 H 0.05 2.01 4.46 -2.39 -0.01 2.00 16 48 H 0.04 1.39 6.61 -2.39 -0.02 1.37 16 49 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 50 H 0.05 1.83 7.93 -2.39 -0.02 1.81 16 51 H 0.04 1.24 6.57 -2.39 -0.02 1.22 16 52 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 53 H 0.07 1.79 7.85 -2.38 -0.02 1.77 16 Total: -1.00 -72.41 390.79 2.74 -69.66 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.78 Total: 18.65 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 5.68 Total: 2.23 kcal Atomic # 7 Polarization: -101.25 SS G_CDS: -4.03 Total: -105.28 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -1.35 Total: -31.26 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.67 Total: 46.00 kcal Total: -72.41 2.74 -69.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086902896.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.674 kcal (2) G-P(sol) polarization free energy of solvation -72.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds