Wall clock time and date at job start Tue Mar 31 2020 19:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.31121 * 2 1 4 4 C 1.55012 * 110.35303 * 237.68035 * 2 1 3 5 5 C 1.54536 * 101.52607 * 204.75445 * 4 2 1 6 6 C 1.53691 * 103.72034 * 34.63963 * 5 4 2 7 7 N 1.47187 * 107.10169 * 338.77693 * 6 5 4 8 8 C 1.34775 * 125.65607 * 178.41301 * 7 6 5 9 9 O 1.21290 * 119.99585 * 179.69089 * 8 7 6 10 10 C 1.50700 * 120.00560 * 359.68845 * 8 7 6 11 11 C 1.52994 * 109.47140 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.89820 * 54.48227 * 11 10 8 13 13 C 1.54383 * 109.83026 * 175.41644 * 11 10 8 14 14 C 1.55305 * 102.25477 * 140.86874 * 13 11 10 15 15 C 1.54940 * 100.94296 * 325.86553 * 14 13 11 16 16 O 1.43247 * 109.83325 * 293.54733 * 11 10 8 17 17 C 1.52277 * 110.16264 * 276.40464 * 5 4 2 18 18 C 1.53309 * 109.41719 * 297.17139 * 17 5 4 19 19 N 1.46920 * 108.70653 * 306.48749 * 18 17 5 20 20 C 1.36937 * 120.56437 * 234.20952 * 19 18 17 21 21 H 1.08002 * 119.99930 * 27.94750 * 20 19 18 22 22 C 1.38810 * 120.00550 * 207.94891 * 20 19 18 23 23 N 1.31624 * 119.99618 * 17.44879 * 22 20 19 24 24 Si 1.86800 * 120.00369 * 197.44559 * 22 20 19 25 25 H 1.48504 * 109.46774 * 90.00415 * 24 22 20 26 26 H 1.48500 * 109.47150 * 209.99902 * 24 22 20 27 27 H 1.48496 * 109.47121 * 330.00282 * 24 22 20 28 28 C 1.46937 * 118.87512 * 54.23562 * 19 18 17 29 29 C 1.52276 * 110.15737 * 153.28453 * 5 4 2 30 30 H 1.09003 * 109.47012 * 299.25296 * 1 2 3 31 31 H 1.08999 * 109.47366 * 59.24873 * 1 2 3 32 32 H 1.08996 * 109.47506 * 179.25226 * 1 2 3 33 33 H 1.08997 * 111.01727 * 322.82073 * 4 2 1 34 34 H 1.09002 * 111.01360 * 86.65882 * 4 2 1 35 35 H 1.08993 * 110.01743 * 219.34939 * 6 5 4 36 36 H 1.09002 * 109.80118 * 98.08395 * 6 5 4 37 37 H 1.09001 * 109.46924 * 60.00090 * 10 8 7 38 38 H 1.08996 * 109.47121 * 300.00806 * 10 8 7 39 39 H 1.08996 * 110.84915 * 259.06125 * 13 11 10 40 40 H 1.09002 * 110.84606 * 22.67578 * 13 11 10 41 41 H 1.09001 * 111.12427 * 83.78823 * 14 13 11 42 42 H 1.09005 * 111.12529 * 207.90410 * 14 13 11 43 43 H 1.08998 * 110.31254 * 277.53216 * 15 14 13 44 44 H 1.09000 * 110.30989 * 155.35779 * 15 14 13 45 45 H 1.09001 * 109.47925 * 57.15538 * 17 5 4 46 46 H 1.09003 * 109.47812 * 177.18152 * 17 5 4 47 47 H 1.09011 * 109.59347 * 186.72427 * 18 17 5 48 48 H 1.08995 * 109.60176 * 66.25823 * 18 17 5 49 49 H 0.97006 * 120.00246 * 179.97438 * 23 22 20 50 50 H 1.09001 * 109.59674 * 185.99654 * 28 19 18 51 51 H 1.09000 * 109.59834 * 65.52697 * 28 19 18 52 52 H 1.08999 * 109.47571 * 182.81064 * 29 5 4 53 53 H 1.08998 * 109.47578 * 302.83938 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0691 -0.7770 -1.2282 5 6 3.4657 -1.2119 -0.7297 6 6 3.2523 -1.4740 0.7696 7 7 2.0429 -0.7368 1.1700 8 6 1.4981 -0.7315 2.4027 9 8 0.4986 -0.0802 2.6211 10 6 2.1308 -1.5349 3.5097 11 6 1.3215 -1.3567 4.7958 12 1 0.2766 -1.6083 4.6145 13 6 1.8941 -2.2651 5.9050 14 6 1.7858 -1.3591 7.1617 15 6 2.0503 0.0362 6.5421 16 8 1.4233 -0.0020 5.2503 17 6 4.4705 -0.0865 -0.9358 18 6 4.6057 0.2081 -2.4343 19 7 4.9200 -1.0448 -3.1343 20 6 6.0173 -1.1308 -3.9490 21 1 6.8788 -0.5067 -3.7623 22 6 6.0226 -2.0202 -5.0147 23 7 4.8898 -2.5233 -5.4576 24 14 7.6372 -2.5029 -5.8206 25 1 8.1910 -3.7012 -5.1403 26 1 7.4022 -2.8118 -7.2539 27 1 8.6019 -1.3796 -5.7079 28 6 4.0368 -2.2038 -2.9458 29 6 3.9056 -2.4828 -1.4440 30 1 -0.3633 0.5022 0.8966 31 1 -0.3634 0.5254 -0.8831 32 1 -0.3634 -1.0275 -0.0134 33 1 1.4450 -1.6433 -1.4475 34 1 2.1495 -0.1255 -2.0984 35 1 4.1108 -1.1148 1.3370 36 1 3.1107 -2.5410 0.9415 37 1 3.1518 -1.1893 3.6716 38 1 2.1438 -2.5888 3.2320 39 1 1.2887 -3.1639 6.0214 40 1 2.9337 -2.5203 5.6992 41 1 0.7889 -1.4120 7.5994 42 1 2.5490 -1.6143 7.8970 43 1 3.1218 0.2068 6.4377 44 1 1.6007 0.8150 7.1580 45 1 4.1246 0.8088 -0.4191 46 1 5.4391 -0.3860 -0.5353 47 1 5.4086 0.9278 -2.5944 48 1 3.6675 0.6132 -2.8133 49 1 4.8933 -3.1445 -6.2026 50 1 4.4645 -3.0742 -3.4433 51 1 3.0542 -1.9866 -3.3646 52 1 4.8683 -2.8071 -1.0490 53 1 3.1641 -3.2653 -1.2830 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086902898.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:02 Heat of formation + Delta-G solvation = -82.114859 kcal Electronic energy + Delta-G solvation = -30891.029972 eV Core-core repulsion = 26954.962998 eV Total energy + Delta-G solvation = -3936.066975 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.75883 -40.53834 -39.41289 -37.38895 -34.73556 -33.73516 -32.95220 -32.64037 -31.91879 -31.52617 -28.72245 -27.57300 -27.12347 -25.66806 -24.08678 -23.36866 -22.57833 -22.54097 -21.77114 -19.84336 -19.60488 -18.37223 -18.07820 -17.64206 -17.26741 -16.77782 -16.71506 -16.15230 -15.70089 -15.67731 -15.28842 -15.02752 -14.94925 -14.74477 -14.43571 -14.29420 -14.22665 -13.91786 -13.74935 -13.45415 -13.14070 -13.06881 -13.00710 -12.88691 -12.76849 -12.57992 -12.56803 -12.29141 -12.21920 -12.13169 -12.03442 -12.00131 -11.85577 -11.72995 -11.67399 -11.40733 -11.06263 -10.98195 -10.48353 -10.47327 -10.41386 -9.56920 -8.61930 -7.83957 -5.28209 1.48342 1.49701 1.58070 1.74081 2.03381 2.53722 2.96635 3.28817 3.45853 3.55313 3.61884 3.73744 3.78092 3.83204 3.94943 4.03315 4.13825 4.24320 4.25538 4.29383 4.31443 4.47678 4.51410 4.53297 4.61135 4.67870 4.69674 4.71796 4.76550 4.81392 4.84408 4.84988 4.91675 4.94903 4.97230 5.01350 5.09068 5.09704 5.15621 5.24220 5.28746 5.31517 5.32179 5.37909 5.45335 5.54694 5.58902 5.69841 5.85125 6.21791 6.43265 6.64571 7.19658 7.28462 7.91930 8.42433 9.21645 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022236 B = 0.002503 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.935530 B =11185.022407 C =11749.703903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.137 3.863 3 H 0.067 0.933 4 C -0.111 4.111 5 C -0.053 4.053 6 C 0.116 3.884 7 N -0.615 5.615 8 C 0.523 3.477 9 O -0.569 6.569 10 C -0.143 4.143 11 C 0.092 3.908 12 H 0.066 0.934 13 C -0.145 4.145 14 C -0.150 4.150 15 C 0.035 3.965 16 O -0.400 6.400 17 C -0.106 4.106 18 C 0.142 3.858 19 N -0.608 5.608 20 C -0.258 4.258 21 H 0.064 0.936 22 C -0.050 4.050 23 N -0.934 5.934 24 Si 0.963 3.037 25 H -0.284 1.284 26 H -0.298 1.298 27 H -0.271 1.271 28 C 0.179 3.821 29 C -0.111 4.111 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.109 0.891 38 H 0.127 0.873 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.104 0.896 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.048 0.952 48 H 0.016 0.984 49 H 0.249 0.751 50 H 0.051 0.949 51 H -0.002 1.002 52 H 0.059 0.941 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.794 -1.012 23.979 24.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.034 3.966 3 H 0.085 0.915 4 C -0.149 4.149 5 C -0.054 4.054 6 C -0.007 4.007 7 N -0.350 5.350 8 C 0.314 3.686 9 O -0.448 6.448 10 C -0.182 4.182 11 C 0.034 3.966 12 H 0.084 0.916 13 C -0.182 4.182 14 C -0.187 4.187 15 C -0.041 4.041 16 O -0.319 6.319 17 C -0.145 4.145 18 C 0.016 3.984 19 N -0.331 5.331 20 C -0.389 4.389 21 H 0.082 0.918 22 C -0.246 4.246 23 N -0.580 5.580 24 Si 0.792 3.208 25 H -0.211 1.211 26 H -0.225 1.225 27 H -0.196 1.196 28 C 0.054 3.946 29 C -0.150 4.150 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.127 0.873 38 H 0.145 0.855 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.096 0.904 42 H 0.122 0.878 43 H 0.083 0.917 44 H 0.103 0.897 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.067 0.933 48 H 0.034 0.966 49 H 0.058 0.942 50 H 0.069 0.931 51 H 0.017 0.983 52 H 0.077 0.923 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.433 -0.574 23.932 24.548 hybrid contribution 0.691 -0.245 -1.187 1.395 sum -4.742 -0.819 22.745 23.248 Atomic orbital electron populations 1.22045 0.94274 1.02007 1.02825 1.21862 0.94734 0.95314 0.84711 0.91474 1.22812 0.95561 1.00057 0.96441 1.20857 0.94872 0.96171 0.93501 1.22171 0.86872 0.97165 0.94453 1.48771 1.28543 1.48584 1.09052 1.20811 0.83690 0.81748 0.82381 1.90641 1.27202 1.44963 1.82037 1.22185 1.01449 1.02074 0.92521 1.22541 0.98802 0.82347 0.92944 0.91564 1.23210 1.03351 0.98785 0.92859 1.23256 1.03750 0.93610 0.98124 1.23601 0.97874 0.98818 0.83806 1.88588 1.81211 1.26911 1.35239 1.21761 0.98458 0.97459 0.96776 1.21077 0.97409 0.88210 0.91671 1.44299 1.28831 1.07726 1.52277 1.19494 0.93096 1.21093 1.05191 0.91836 1.25730 0.99290 1.02344 0.97193 1.70184 1.25700 1.34759 1.27368 0.85331 0.80217 0.78407 0.76887 1.21121 1.22480 1.19551 1.20589 0.91515 0.90481 0.92055 1.21879 1.00698 0.95734 0.96689 0.91499 0.91321 0.93215 0.91019 0.90871 0.89920 0.89548 0.87308 0.85492 0.88389 0.88650 0.90406 0.87796 0.91701 0.89748 0.91310 0.91837 0.93332 0.96637 0.94231 0.93073 0.98350 0.92264 0.91199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.26 8.71 71.98 0.63 -3.63 16 2 C 0.14 3.76 3.44 45.49 0.16 3.92 16 3 H 0.07 1.91 7.75 -2.39 -0.02 1.89 16 4 C -0.11 -3.22 4.34 31.81 0.14 -3.08 16 5 C -0.05 -1.51 0.55 -51.90 -0.03 -1.54 16 6 C 0.12 2.56 5.67 86.48 0.49 3.05 16 7 N -0.62 -15.59 3.25 -788.66 -2.56 -18.15 16 8 C 0.52 13.90 7.53 87.66 0.66 14.56 16 9 O -0.57 -19.49 13.16 8.83 0.12 -19.38 16 10 C -0.14 -2.53 4.47 29.85 0.13 -2.40 16 11 C 0.09 1.73 3.04 31.06 0.09 1.82 16 12 H 0.07 1.47 7.95 -2.39 -0.02 1.45 16 13 C -0.14 -1.53 6.54 31.86 0.21 -1.32 16 14 C -0.15 -1.54 7.16 32.05 0.23 -1.31 16 15 C 0.04 0.55 7.78 72.65 0.56 1.11 16 16 O -0.40 -9.78 10.36 -137.09 -1.42 -11.20 16 17 C -0.11 -3.23 4.72 30.46 0.14 -3.08 16 18 C 0.14 5.59 6.18 86.40 0.53 6.13 16 19 N -0.61 -29.20 2.98 -698.62 -2.08 -31.28 16 20 C -0.26 -13.86 9.57 84.03 0.80 -13.06 16 21 H 0.06 3.35 7.89 -2.91 -0.02 3.33 16 22 C -0.05 -2.75 4.90 84.86 0.42 -2.34 16 23 N -0.93 -54.34 11.19 21.65 0.24 -54.09 16 24 Si 0.96 44.20 29.59 68.60 2.03 46.23 16 25 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 26 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 27 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 28 C 0.18 8.13 5.03 86.40 0.43 8.56 16 29 C -0.11 -3.67 4.73 30.46 0.14 -3.52 16 30 H 0.07 2.11 5.89 -2.39 -0.01 2.10 16 31 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.07 2.10 7.91 -2.39 -0.02 2.09 16 34 H 0.07 2.39 6.08 -2.39 -0.01 2.37 16 35 H 0.08 1.61 7.82 -2.39 -0.02 1.59 16 36 H 0.09 1.61 7.79 -2.39 -0.02 1.60 16 37 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.10 0.77 8.14 -2.39 -0.02 0.76 16 40 H 0.09 0.74 7.85 -2.39 -0.02 0.72 16 41 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 43 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.07 1.88 7.47 -2.39 -0.02 1.87 16 46 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.05 1.92 7.93 -2.38 -0.02 1.90 16 48 H 0.02 0.63 6.47 -2.39 -0.02 0.62 16 49 H 0.25 14.07 8.31 -92.70 -0.77 13.30 16 50 H 0.05 2.69 6.02 -2.39 -0.01 2.67 16 51 H 0.00 -0.08 7.55 -2.39 -0.02 -0.09 16 52 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 53 H 0.07 2.05 8.11 -2.39 -0.02 2.03 16 Total: -1.00 -69.67 394.60 2.94 -66.72 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.87 Total: 17.28 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 5.75 Total: 3.87 kcal Atomic # 7 Polarization: -99.12 SS G_CDS: -4.40 Total: -103.53 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -1.30 Total: -30.58 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -69.67 2.94 -66.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086902898.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.390 kcal (2) G-P(sol) polarization free energy of solvation -69.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds