Wall clock time and date at job start Tue Mar 31 2020 19:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 110.31387 * 2 1 4 4 C 1.55019 * 110.35377 * 237.79866 * 2 1 3 5 5 C 1.54529 * 101.52701 * 204.75586 * 4 2 1 6 6 C 1.53677 * 103.64502 * 34.83670 * 5 4 2 7 7 N 1.47348 * 107.13308 * 338.35402 * 6 5 4 8 8 C 1.34774 * 125.74737 * 178.59567 * 7 6 5 9 9 O 1.21282 * 119.99824 * 185.27676 * 8 7 6 10 10 C 1.50703 * 120.00248 * 5.26975 * 8 7 6 11 11 H 1.09004 * 109.51931 * 34.81289 * 10 8 7 12 12 C 1.53173 * 109.52402 * 155.00382 * 10 8 7 13 13 C 1.53176 * 109.03623 * 176.88985 * 12 10 8 14 14 C 1.53093 * 109.16306 * 303.01983 * 13 12 10 15 15 O 1.42899 * 109.41683 * 57.60696 * 14 13 12 16 16 C 1.42899 * 114.10031 * 298.84854 * 15 14 13 17 17 C 1.52271 * 110.16339 * 276.40424 * 5 4 2 18 18 C 1.53312 * 109.41896 * 297.16730 * 17 5 4 19 19 N 1.46921 * 108.70528 * 306.48602 * 18 17 5 20 20 C 1.36938 * 120.56558 * 234.25024 * 19 18 17 21 21 H 1.07997 * 119.99542 * 26.41235 * 20 19 18 22 22 C 1.38814 * 120.00444 * 206.40434 * 20 19 18 23 23 N 1.31621 * 119.99775 * 17.32715 * 22 20 19 24 24 Si 1.86793 * 120.00372 * 197.32712 * 22 20 19 25 25 H 1.48506 * 109.47173 * 89.99925 * 24 22 20 26 26 H 1.48492 * 109.47303 * 209.99911 * 24 22 20 27 27 H 1.48501 * 109.46974 * 330.00509 * 24 22 20 28 28 C 1.46939 * 118.87395 * 54.23701 * 19 18 17 29 29 C 1.52276 * 110.15972 * 153.27803 * 5 4 2 30 30 H 1.08993 * 109.47521 * 180.69634 * 1 2 3 31 31 H 1.09000 * 109.47054 * 300.70171 * 1 2 3 32 32 H 1.09007 * 109.47106 * 60.69708 * 1 2 3 33 33 H 1.08997 * 111.01324 * 322.82003 * 4 2 1 34 34 H 1.08999 * 111.01575 * 86.69566 * 4 2 1 35 35 H 1.09001 * 109.91096 * 97.81112 * 6 5 4 36 36 H 1.08997 * 109.91137 * 218.88294 * 6 5 4 37 37 H 1.09000 * 109.54464 * 296.75738 * 12 10 8 38 38 H 1.08999 * 109.53943 * 57.02245 * 12 10 8 39 39 H 1.09000 * 109.52128 * 183.11904 * 13 12 10 40 40 H 1.09001 * 109.57783 * 62.95635 * 13 12 10 41 41 H 1.08998 * 109.47983 * 297.62756 * 14 13 12 42 42 H 1.08996 * 109.48135 * 177.59394 * 14 13 12 43 43 H 1.09010 * 109.47721 * 301.16950 * 16 15 14 44 44 H 1.08999 * 109.48228 * 181.13909 * 16 15 14 45 45 H 1.09004 * 109.47881 * 57.14909 * 17 5 4 46 46 H 1.09003 * 109.48284 * 177.17813 * 17 5 4 47 47 H 1.09002 * 109.59758 * 186.72322 * 18 17 5 48 48 H 1.08994 * 109.59888 * 66.25597 * 18 17 5 49 49 H 0.96995 * 120.00237 * 180.02562 * 23 22 20 50 50 H 1.09001 * 109.59836 * 185.99194 * 28 19 18 51 51 H 1.08997 * 109.60206 * 65.52210 * 28 19 18 52 52 H 1.08995 * 109.48220 * 182.80650 * 29 5 4 53 53 H 1.08994 * 109.48141 * 302.83597 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9084 1.0222 0.0000 4 6 2.0692 -0.7745 -1.2298 5 6 3.4657 -1.2105 -0.7323 6 6 3.2493 -1.4800 0.7651 7 7 2.0429 -0.7370 1.1699 8 6 1.4980 -0.7319 2.4026 9 8 0.4474 -0.1585 2.5987 10 6 2.1939 -1.4388 3.5371 11 1 3.2733 -1.3495 3.4144 12 6 1.7747 -0.8069 4.8680 13 6 2.4268 -1.5825 6.0166 14 6 2.0235 -3.0562 5.9206 15 8 2.4149 -3.5738 4.6475 16 6 1.7997 -2.9181 3.5368 17 6 4.4706 -0.0846 -0.9360 18 6 4.6058 0.2130 -2.4339 19 7 4.9203 -1.0385 -3.1364 20 6 6.0181 -1.1232 -3.9505 21 1 6.8698 -0.4822 -3.7769 22 6 6.0364 -2.0329 -4.9989 23 7 4.9115 -2.5640 -5.4290 24 14 7.6573 -2.5034 -5.7991 25 1 8.2333 -3.6784 -5.0971 26 1 7.4246 -2.8441 -7.2256 27 1 8.6028 -1.3616 -5.7107 28 6 4.0369 -2.1979 -2.9504 29 6 3.9056 -2.4799 -1.4491 30 1 -0.3634 -1.0275 0.0125 31 1 -0.3633 0.5247 0.8836 32 1 -0.3634 0.5030 -0.8962 33 1 1.4451 -1.6403 -1.4508 34 1 2.1502 -0.1211 -2.0985 35 1 3.1031 -2.5470 0.9329 36 1 4.1107 -1.1297 1.3337 37 1 2.1022 0.2323 4.8974 38 1 0.6901 -0.8517 4.9671 39 1 2.0898 -1.1740 6.9694 40 1 3.5111 -1.4962 5.9463 41 1 0.9430 -3.1455 6.0327 42 1 2.5189 -3.6208 6.7105 43 1 0.7161 -3.0055 3.6177 44 1 2.1338 -3.3832 2.6094 45 1 4.1246 0.8096 -0.4176 46 1 5.4391 -0.3850 -0.5361 47 1 5.4087 0.9329 -2.5926 48 1 3.6677 0.6188 -2.8122 49 1 4.9243 -3.2000 -6.1612 50 1 4.4647 -3.0673 -3.4497 51 1 3.0543 -1.9798 -3.3688 52 1 4.8683 -2.8051 -1.0548 53 1 3.1642 -3.2628 -1.2896 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086908507.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:46 Heat of formation + Delta-G solvation = -84.943066 kcal Electronic energy + Delta-G solvation = -31388.458150 eV Core-core repulsion = 27452.268535 eV Total energy + Delta-G solvation = -3936.189615 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.96000 -40.56292 -39.31785 -37.46046 -34.78696 -34.71107 -33.29940 -32.67290 -31.68227 -31.51066 -28.69375 -27.18915 -26.13657 -25.90765 -25.26713 -24.01329 -22.97066 -22.56845 -21.27734 -19.93486 -19.64552 -18.40726 -18.00220 -17.59101 -17.13003 -16.94452 -16.77135 -16.12877 -15.80495 -15.69628 -15.40905 -15.09315 -14.94250 -14.92705 -14.65837 -14.48375 -14.24677 -13.98767 -13.82584 -13.54101 -13.48981 -13.15749 -13.09233 -13.01180 -12.85895 -12.60358 -12.56530 -12.29832 -12.19502 -12.13053 -12.04875 -11.88998 -11.85963 -11.73104 -11.42317 -11.37840 -11.06860 -11.00261 -10.70555 -10.46660 -10.38460 -9.65147 -8.63507 -7.83363 -5.26598 1.48392 1.50164 1.51716 1.58078 1.90362 2.53951 2.85107 3.28774 3.37035 3.52487 3.62112 3.72955 3.74100 3.83436 3.84115 3.97050 4.10130 4.12803 4.19700 4.25443 4.29956 4.41661 4.49249 4.51029 4.58184 4.60914 4.67605 4.71032 4.73001 4.75339 4.81829 4.83863 4.89259 4.91354 4.96399 5.02956 5.07636 5.09443 5.14157 5.22874 5.26274 5.30717 5.32992 5.36181 5.45541 5.50799 5.59857 5.69677 5.86222 6.13723 6.43202 6.52296 7.11150 7.19728 7.92617 8.41748 9.21953 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018433 B = 0.002861 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.669451 B = 9784.681651 C =10548.861294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.136 3.864 3 H 0.076 0.924 4 C -0.112 4.112 5 C -0.052 4.052 6 C 0.113 3.887 7 N -0.609 5.609 8 C 0.535 3.465 9 O -0.568 6.568 10 C -0.134 4.134 11 H 0.109 0.891 12 C -0.103 4.103 13 C -0.148 4.148 14 C 0.049 3.951 15 O -0.390 6.390 16 C 0.078 3.922 17 C -0.106 4.106 18 C 0.142 3.858 19 N -0.609 5.609 20 C -0.257 4.257 21 H 0.065 0.935 22 C -0.051 4.051 23 N -0.934 5.934 24 Si 0.962 3.038 25 H -0.286 1.286 26 H -0.298 1.298 27 H -0.271 1.271 28 C 0.179 3.821 29 C -0.113 4.113 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.055 0.945 42 H 0.113 0.887 43 H 0.052 0.948 44 H 0.101 0.899 45 H 0.073 0.927 46 H 0.061 0.939 47 H 0.049 0.951 48 H 0.018 0.982 49 H 0.248 0.752 50 H 0.054 0.946 51 H -0.001 1.001 52 H 0.056 0.944 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.144 1.403 22.022 22.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.033 3.967 3 H 0.094 0.906 4 C -0.150 4.150 5 C -0.053 4.053 6 C -0.009 4.009 7 N -0.342 5.342 8 C 0.324 3.676 9 O -0.448 6.448 10 C -0.155 4.155 11 H 0.127 0.873 12 C -0.141 4.141 13 C -0.186 4.186 14 C -0.027 4.027 15 O -0.308 6.308 16 C 0.001 3.999 17 C -0.145 4.145 18 C 0.017 3.983 19 N -0.332 5.332 20 C -0.387 4.387 21 H 0.083 0.917 22 C -0.246 4.246 23 N -0.581 5.581 24 Si 0.791 3.209 25 H -0.213 1.213 26 H -0.225 1.225 27 H -0.195 1.195 28 C 0.053 3.947 29 C -0.152 4.152 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.131 0.869 43 H 0.071 0.929 44 H 0.119 0.881 45 H 0.091 0.909 46 H 0.080 0.920 47 H 0.068 0.932 48 H 0.036 0.964 49 H 0.057 0.943 50 H 0.072 0.928 51 H 0.017 0.983 52 H 0.075 0.925 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.604 1.472 22.054 23.069 hybrid contribution 0.532 -0.033 -1.213 1.325 sum -6.072 1.438 20.841 21.755 Atomic orbital electron populations 1.22061 0.94002 1.02046 1.02894 1.21953 0.94891 0.95497 0.84324 0.90597 1.22835 0.95367 1.00178 0.96624 1.20838 0.95106 0.96205 0.93119 1.22230 0.87057 0.96825 0.94777 1.48775 1.28534 1.47923 1.08987 1.20433 0.84388 0.80209 0.82527 1.90622 1.23732 1.47109 1.83350 1.21976 1.02370 0.97220 0.93979 0.87309 1.21436 1.01160 0.99543 0.91979 1.22183 1.01803 0.95539 0.99065 1.22860 1.00134 0.94490 0.85200 1.87964 1.69405 1.58700 1.14772 1.22379 0.97325 0.89481 0.90721 1.21767 0.98355 0.97455 0.96907 1.21081 0.97558 0.88141 0.91565 1.44317 1.28771 1.07912 1.52211 1.19521 0.93575 1.19631 1.06015 0.91710 1.25681 0.99327 1.02233 0.97405 1.70171 1.25953 1.33500 1.28442 0.85336 0.80291 0.78360 0.76892 1.21271 1.22483 1.19536 1.20615 0.91516 0.90699 0.91875 1.21897 1.00570 0.95808 0.96934 0.93432 0.91249 0.91201 0.91096 0.90536 0.90072 0.89783 0.91327 0.91655 0.88608 0.90548 0.92649 0.86857 0.92940 0.88051 0.90868 0.91992 0.93242 0.96370 0.94258 0.92777 0.98287 0.92521 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 8.59 71.98 0.62 -3.25 16 2 C 0.14 3.43 3.46 45.50 0.16 3.59 16 3 H 0.08 1.91 7.75 -2.39 -0.02 1.89 16 4 C -0.11 -3.11 4.34 31.81 0.14 -2.97 16 5 C -0.05 -1.44 0.55 -51.91 -0.03 -1.47 16 6 C 0.11 2.51 5.47 86.45 0.47 2.98 16 7 N -0.61 -14.48 3.25 -788.25 -2.56 -17.05 16 8 C 0.53 13.08 6.79 87.66 0.60 13.68 16 9 O -0.57 -17.20 13.62 -3.04 -0.04 -17.24 16 10 C -0.13 -2.53 2.19 -11.45 -0.03 -2.56 16 11 H 0.11 1.87 7.36 -2.38 -0.02 1.85 16 12 C -0.10 -1.76 4.90 30.71 0.15 -1.61 16 13 C -0.15 -1.83 6.14 30.68 0.19 -1.64 16 14 C 0.05 0.66 6.84 72.01 0.49 1.15 16 15 O -0.39 -7.40 10.77 -148.98 -1.60 -9.00 16 16 C 0.08 1.46 6.11 72.01 0.44 1.90 16 17 C -0.11 -3.13 4.74 30.46 0.14 -2.99 16 18 C 0.14 5.45 6.19 86.40 0.53 5.99 16 19 N -0.61 -28.98 2.99 -698.60 -2.09 -31.07 16 20 C -0.26 -13.73 9.60 84.03 0.81 -12.93 16 21 H 0.07 3.39 7.88 -2.91 -0.02 3.37 16 22 C -0.05 -2.81 4.93 84.86 0.42 -2.39 16 23 N -0.93 -54.17 11.07 21.65 0.24 -53.93 16 24 Si 0.96 44.23 29.59 68.60 2.03 46.26 16 25 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 26 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 27 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 28 C 0.18 8.08 5.05 86.40 0.44 8.52 16 29 C -0.11 -3.77 4.72 30.46 0.14 -3.63 16 30 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.97 5.98 -2.39 -0.01 1.95 16 32 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.07 2.02 7.91 -2.39 -0.02 2.00 16 34 H 0.08 2.37 6.08 -2.39 -0.01 2.36 16 35 H 0.08 1.64 6.69 -2.39 -0.02 1.63 16 36 H 0.08 1.65 7.50 -2.39 -0.02 1.63 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.28 7.77 -2.39 -0.02 1.26 16 39 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 44 H 0.10 1.81 7.05 -2.39 -0.02 1.79 16 45 H 0.07 1.87 7.47 -2.38 -0.02 1.85 16 46 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.05 1.90 7.92 -2.39 -0.02 1.89 16 48 H 0.02 0.71 6.47 -2.39 -0.02 0.70 16 49 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 50 H 0.05 2.86 5.89 -2.39 -0.01 2.85 16 51 H 0.00 -0.05 7.55 -2.39 -0.02 -0.06 16 52 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 53 H 0.07 2.04 8.11 -2.39 -0.02 2.02 16 Total: -1.00 -64.36 388.31 2.53 -61.83 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.88 Total: 17.83 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 5.68 Total: 2.37 kcal Atomic # 7 Polarization: -97.64 SS G_CDS: -4.41 Total: -102.05 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -1.65 Total: -26.24 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -64.36 2.53 -61.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086908507.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.108 kcal (2) G-P(sol) polarization free energy of solvation -64.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds