Wall clock time and date at job start Tue Mar 31 2020 19:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.98828 * 2 1 4 4 C 1.54457 * 109.87941 * 121.08200 * 2 1 3 5 5 C 1.54378 * 102.87964 * 140.92618 * 4 2 1 6 6 C 1.54155 * 102.47042 * 325.36273 * 5 4 2 7 7 N 1.47088 * 109.87915 * 238.91965 * 2 1 3 8 8 C 1.34782 * 125.62805 * 61.60747 * 7 2 1 9 9 O 1.21281 * 119.99733 * 4.99607 * 8 7 2 10 10 C 1.50692 * 119.99607 * 184.99730 * 8 7 2 11 11 H 1.09002 * 109.52929 * 24.87674 * 10 8 7 12 12 C 1.53180 * 109.52049 * 145.00373 * 10 8 7 13 13 C 1.53181 * 109.03951 * 176.88370 * 12 10 8 14 14 C 1.53096 * 109.16028 * 303.02028 * 13 12 10 15 15 O 1.42903 * 109.41695 * 57.60401 * 14 13 12 16 16 C 1.42904 * 114.15590 * 298.87694 * 15 14 13 17 17 C 1.52095 * 110.55443 * 83.31405 * 5 4 2 18 18 C 1.53335 * 109.49756 * 64.34996 * 17 5 4 19 19 N 1.46936 * 108.69215 * 53.28679 * 18 17 5 20 20 C 1.36938 * 120.57938 * 125.55935 * 19 18 17 21 21 H 1.08001 * 119.99848 * 210.74691 * 20 19 18 22 22 C 1.38817 * 120.00041 * 30.74347 * 20 19 18 23 23 N 1.31617 * 119.99731 * 16.70345 * 22 20 19 24 24 Si 1.86797 * 119.99879 * 196.70164 * 22 20 19 25 25 H 1.48501 * 109.47160 * 90.00075 * 24 22 20 26 26 H 1.48499 * 109.47276 * 210.00294 * 24 22 20 27 27 H 1.48507 * 109.47213 * 329.99983 * 24 22 20 28 28 C 1.46938 * 118.83797 * 305.58094 * 19 18 17 29 29 C 1.52102 * 110.55465 * 207.43068 * 5 4 2 30 30 H 1.09003 * 109.47179 * 179.62434 * 1 2 3 31 31 H 1.08990 * 109.47234 * 299.62595 * 1 2 3 32 32 H 1.09004 * 109.47143 * 59.62870 * 1 2 3 33 33 H 1.08998 * 110.73105 * 22.58092 * 4 2 1 34 34 H 1.09001 * 110.73686 * 259.27331 * 4 2 1 35 35 H 1.09000 * 110.37533 * 154.90350 * 6 5 4 36 36 H 1.08995 * 110.37372 * 277.25498 * 6 5 4 37 37 H 1.08993 * 109.54283 * 296.74948 * 12 10 8 38 38 H 1.08997 * 109.54371 * 56.92618 * 12 10 8 39 39 H 1.09003 * 109.52137 * 62.91715 * 13 12 10 40 40 H 1.08993 * 109.52716 * 183.11597 * 13 12 10 41 41 H 1.09003 * 109.48134 * 177.58695 * 14 13 12 42 42 H 1.08996 * 109.48086 * 297.61023 * 14 13 12 43 43 H 1.08999 * 109.42718 * 301.10659 * 16 15 14 44 44 H 1.08997 * 109.53868 * 181.07139 * 16 15 14 45 45 H 1.08997 * 109.47040 * 304.34353 * 17 5 4 46 46 H 1.08999 * 109.46627 * 184.35522 * 17 5 4 47 47 H 1.09001 * 109.59918 * 293.52607 * 18 17 5 48 48 H 1.08993 * 109.60163 * 173.05257 * 18 17 5 49 49 H 0.97003 * 119.99620 * 179.97438 * 23 22 20 50 50 H 1.09003 * 109.60181 * 174.19184 * 28 19 18 51 51 H 1.09003 * 109.59644 * 294.49967 * 28 19 18 52 52 H 1.08999 * 109.47223 * 175.64587 * 29 5 4 53 53 H 1.09003 * 109.46570 * 55.65268 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 6 2.0552 -0.7499 1.2440 5 6 3.2709 -1.5243 0.6912 6 6 2.8170 -1.8800 -0.7384 7 7 2.0301 -0.7141 -1.1847 8 6 1.8072 -0.3613 -2.4663 9 8 1.2208 0.6700 -2.7181 10 6 2.2866 -1.2484 -3.5861 11 1 2.3752 -2.2735 -3.2264 12 6 1.2852 -1.1970 -4.7442 13 6 1.8209 -2.0398 -5.9057 14 6 3.2028 -1.5189 -6.3090 15 8 4.0763 -1.5650 -5.1789 16 6 3.6512 -0.7590 -4.0781 17 6 4.5019 -0.6316 0.6566 18 6 4.8881 -0.2368 2.0871 19 7 5.0214 -1.4582 2.8930 20 6 6.1740 -1.7122 3.5874 21 1 6.4911 -2.7312 3.7532 22 6 6.9349 -0.6600 4.0782 23 7 6.4097 0.5431 4.1742 24 14 8.7039 -0.9515 4.6024 25 1 9.6058 -0.7361 3.4424 26 1 9.0606 -0.0047 5.6893 27 1 8.8518 -2.3457 5.0922 28 6 3.8966 -2.4024 2.9403 29 6 3.5159 -2.7855 1.5053 30 1 -0.3634 -1.0277 -0.0067 31 1 -0.3633 0.5080 0.8932 32 1 -0.3633 0.5196 -0.8867 33 1 1.3012 -1.4377 1.6268 34 1 2.3649 -0.0462 2.0167 35 1 3.6816 -2.0247 -1.3862 36 1 2.1956 -2.7754 -0.7275 37 1 0.3264 -1.5974 -4.4151 38 1 1.1569 -0.1648 -5.0698 39 1 1.9010 -3.0811 -5.5935 40 1 1.1412 -1.9643 -6.7544 41 1 3.6075 -2.1418 -7.1068 42 1 3.1156 -0.4906 -6.6595 43 1 3.5710 0.2796 -4.3989 44 1 4.3777 -0.8345 -3.2690 45 1 4.2835 0.2662 0.0785 46 1 5.3283 -1.1702 0.1929 47 1 4.1121 0.3993 2.5129 48 1 5.8373 0.2988 2.0750 49 1 6.9413 1.2783 4.5175 50 1 4.1918 -3.2955 3.4911 51 1 3.0457 -1.9330 3.4339 52 1 4.3272 -3.3571 1.0545 53 1 2.6093 -3.3906 1.5193 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086908508.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:51 Heat of formation + Delta-G solvation = -90.621400 kcal Electronic energy + Delta-G solvation = -31497.566762 eV Core-core repulsion = 27561.130916 eV Total energy + Delta-G solvation = -3936.435846 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.95681 -40.57344 -39.29180 -37.50432 -34.80228 -34.72140 -33.25728 -32.57271 -31.74944 -31.61783 -28.69583 -27.17758 -26.14902 -25.90226 -25.42182 -23.95606 -22.95822 -22.57795 -21.23336 -19.94027 -19.65769 -18.47371 -18.08579 -17.42238 -17.33048 -16.84233 -16.77800 -16.15598 -15.75111 -15.71424 -15.37114 -15.19628 -15.09590 -14.65190 -14.64009 -14.54982 -14.21928 -14.01294 -13.90435 -13.61297 -13.41493 -13.27466 -13.14223 -12.97157 -12.86229 -12.61018 -12.58252 -12.26820 -12.19002 -12.14398 -12.04200 -11.95423 -11.80087 -11.72359 -11.41602 -11.38773 -11.08864 -11.04160 -10.82172 -10.50763 -10.48990 -9.66888 -8.59121 -7.85260 -5.32193 1.46786 1.48618 1.49353 1.56692 1.90485 2.52487 2.83630 3.28266 3.37129 3.51595 3.60901 3.73155 3.75017 3.80251 3.88022 3.96595 4.10623 4.14363 4.19332 4.24986 4.28727 4.41480 4.45697 4.52638 4.57099 4.57990 4.64944 4.72187 4.73872 4.79075 4.79444 4.84709 4.87949 4.93527 4.95491 5.01514 5.04938 5.06590 5.11281 5.23039 5.28156 5.29311 5.32765 5.40353 5.41988 5.46011 5.56324 5.69042 5.80450 6.12154 6.43158 6.51327 7.08622 7.18675 7.90948 8.42811 9.20196 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015326 B = 0.003125 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.541769 B = 8957.876715 C = 9896.220898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.135 3.865 3 H 0.049 0.951 4 C -0.110 4.110 5 C -0.053 4.053 6 C 0.111 3.889 7 N -0.607 5.607 8 C 0.533 3.467 9 O -0.578 6.578 10 C -0.131 4.131 11 H 0.114 0.886 12 C -0.105 4.105 13 C -0.146 4.146 14 C 0.048 3.952 15 O -0.389 6.389 16 C 0.078 3.922 17 C -0.110 4.110 18 C 0.185 3.815 19 N -0.608 5.608 20 C -0.260 4.260 21 H 0.066 0.934 22 C -0.049 4.049 23 N -0.934 5.934 24 Si 0.961 3.039 25 H -0.287 1.287 26 H -0.298 1.298 27 H -0.267 1.267 28 C 0.142 3.858 29 C -0.104 4.104 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.115 0.885 42 H 0.052 0.948 43 H 0.048 0.952 44 H 0.097 0.903 45 H 0.047 0.953 46 H 0.053 0.947 47 H -0.001 1.001 48 H 0.039 0.961 49 H 0.248 0.752 50 H 0.052 0.948 51 H 0.017 0.983 52 H 0.062 0.938 53 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.030 -8.130 -18.373 23.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.031 3.969 3 H 0.068 0.932 4 C -0.148 4.148 5 C -0.054 4.054 6 C -0.011 4.011 7 N -0.339 5.339 8 C 0.323 3.677 9 O -0.459 6.459 10 C -0.152 4.152 11 H 0.132 0.868 12 C -0.143 4.143 13 C -0.184 4.184 14 C -0.028 4.028 15 O -0.308 6.308 16 C 0.000 4.000 17 C -0.149 4.149 18 C 0.059 3.941 19 N -0.331 5.331 20 C -0.390 4.390 21 H 0.083 0.917 22 C -0.245 4.245 23 N -0.580 5.580 24 Si 0.790 3.210 25 H -0.214 1.214 26 H -0.225 1.225 27 H -0.191 1.191 28 C 0.016 3.984 29 C -0.143 4.143 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.113 0.887 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.115 0.885 41 H 0.133 0.867 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.115 0.885 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.017 0.983 48 H 0.058 0.942 49 H 0.057 0.943 50 H 0.070 0.930 51 H 0.035 0.965 52 H 0.081 0.919 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.119 -7.559 -18.503 23.375 hybrid contribution 0.921 0.933 0.870 1.573 sum -11.198 -6.625 -17.633 21.914 Atomic orbital electron populations 1.22012 0.93752 1.02694 1.02249 1.21559 0.95008 0.95512 0.84784 0.93238 1.22693 0.97202 0.99355 0.95525 1.20888 0.94170 0.96112 0.94212 1.22526 0.95441 0.88370 0.94717 1.48754 1.51673 1.28821 1.04701 1.20515 0.78722 0.85777 0.82718 1.90657 1.44478 1.26883 1.83843 1.21949 0.98130 1.00739 0.94416 0.86831 1.21467 0.97558 1.01215 0.94031 1.22171 0.97243 1.00330 0.98620 1.22886 0.90233 1.01533 0.88190 1.87960 1.49136 1.68748 1.24919 1.22339 0.93766 0.93925 0.89923 1.21758 0.96914 0.98389 0.97852 1.20481 0.97818 0.87762 0.88029 1.44262 1.13209 1.22279 1.53392 1.19492 0.99457 0.92323 1.27765 0.91670 1.25813 1.02794 0.96362 0.99488 1.70180 1.36198 1.01263 1.50364 0.85353 0.80946 0.77577 0.77105 1.21440 1.22467 1.19112 1.21085 0.89320 0.92613 0.95338 1.21702 1.01882 0.95338 0.95421 0.91233 0.90670 0.93468 0.88665 0.91700 0.89735 0.88495 0.90851 0.92005 0.90121 0.88473 0.86676 0.92939 0.93342 0.88464 0.93389 0.92783 0.98264 0.94197 0.94331 0.92960 0.96506 0.91880 0.89020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.10 71.98 0.66 -2.83 16 2 C 0.13 3.60 3.06 45.37 0.14 3.74 16 3 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 4 C -0.11 -2.96 4.48 31.56 0.14 -2.82 16 5 C -0.05 -1.46 0.54 -51.92 -0.03 -1.48 16 6 C 0.11 2.38 5.06 86.57 0.44 2.82 16 7 N -0.61 -15.10 3.06 -788.79 -2.41 -17.51 16 8 C 0.53 14.00 6.60 87.65 0.58 14.58 16 9 O -0.58 -19.35 15.45 -3.03 -0.05 -19.40 16 10 C -0.13 -2.60 2.17 -11.45 -0.02 -2.63 16 11 H 0.11 1.90 7.14 -2.39 -0.02 1.89 16 12 C -0.10 -1.83 5.03 30.71 0.15 -1.67 16 13 C -0.15 -1.81 6.14 30.69 0.19 -1.62 16 14 C 0.05 0.68 6.84 72.01 0.49 1.18 16 15 O -0.39 -7.98 10.76 -148.98 -1.60 -9.59 16 16 C 0.08 1.65 6.11 72.01 0.44 2.09 16 17 C -0.11 -3.91 4.85 30.41 0.15 -3.76 16 18 C 0.18 8.63 5.00 86.41 0.43 9.06 16 19 N -0.61 -29.13 2.97 -698.49 -2.07 -31.20 16 20 C -0.26 -13.96 9.55 84.03 0.80 -13.16 16 21 H 0.07 3.41 7.88 -2.91 -0.02 3.39 16 22 C -0.05 -2.71 4.90 84.86 0.42 -2.30 16 23 N -0.93 -55.28 11.36 21.65 0.25 -55.04 16 24 Si 0.96 44.69 29.59 68.60 2.03 46.72 16 25 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 26 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 27 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 28 C 0.14 5.31 6.24 86.41 0.54 5.85 16 29 C -0.10 -2.86 4.83 30.41 0.15 -2.72 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.05 1.27 7.05 -2.39 -0.02 1.25 16 33 H 0.09 2.16 7.68 -2.39 -0.02 2.14 16 34 H 0.06 2.13 6.20 -2.39 -0.01 2.12 16 35 H 0.08 1.71 7.34 -2.39 -0.02 1.69 16 36 H 0.10 1.60 7.99 -2.39 -0.02 1.58 16 37 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.06 1.28 7.76 -2.39 -0.02 1.27 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.10 2.07 7.89 -2.39 -0.02 2.05 16 45 H 0.05 1.69 7.81 -2.39 -0.02 1.67 16 46 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.00 -0.03 6.57 -2.39 -0.02 -0.05 16 48 H 0.04 2.18 6.21 -2.39 -0.01 2.16 16 49 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 50 H 0.05 1.95 7.93 -2.39 -0.02 1.93 16 51 H 0.02 0.64 7.64 -2.39 -0.02 0.63 16 52 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 53 H 0.09 1.89 8.09 -2.39 -0.02 1.87 16 Total: -1.00 -68.00 394.07 2.67 -65.33 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.87 Total: 16.34 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 5.66 Total: 4.34 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -4.24 Total: -103.75 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -1.65 Total: -28.98 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -68.00 2.67 -65.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086908508.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.291 kcal (2) G-P(sol) polarization free energy of solvation -67.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds