Wall clock time and date at job start Tue Mar 31 2020 19:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08991 * 109.98831 * 2 1 4 4 C 1.54459 * 109.87437 * 238.91749 * 2 1 3 5 5 C 1.54397 * 102.86683 * 219.06971 * 4 2 1 6 6 C 1.54114 * 102.47727 * 34.64790 * 5 4 2 7 7 N 1.47080 * 109.87807 * 121.08283 * 2 1 3 8 8 C 1.34774 * 125.62819 * 298.43526 * 7 2 1 9 9 O 1.21284 * 120.00319 * 5.42798 * 8 7 2 10 10 C 1.50709 * 119.99867 * 185.42482 * 8 7 2 11 11 H 1.08996 * 109.52198 * 334.72948 * 10 8 7 12 12 C 1.53187 * 109.51897 * 214.61006 * 10 8 7 13 13 C 1.53180 * 109.03325 * 183.11308 * 12 10 8 14 14 C 1.53096 * 109.16045 * 56.97961 * 13 12 10 15 15 O 1.42901 * 109.41481 * 302.38798 * 14 13 12 16 16 C 1.42906 * 114.09860 * 61.16282 * 15 14 13 17 17 C 1.52109 * 110.50658 * 152.62804 * 5 4 2 18 18 C 1.53344 * 109.44629 * 64.11500 * 17 5 4 19 19 N 1.46938 * 108.68916 * 53.29843 * 18 17 5 20 20 C 1.36936 * 120.55166 * 125.37270 * 19 18 17 21 21 H 1.07993 * 120.00297 * 324.52857 * 20 19 18 22 22 C 1.38820 * 119.99529 * 144.53479 * 20 19 18 23 23 N 1.31618 * 119.99986 * 168.35687 * 22 20 19 24 24 Si 1.86804 * 120.00056 * 348.35680 * 22 20 19 25 25 H 1.48490 * 109.46921 * 91.73669 * 24 22 20 26 26 H 1.48495 * 109.46867 * 211.73886 * 24 22 20 27 27 H 1.48506 * 109.46948 * 331.73725 * 24 22 20 28 28 C 1.46934 * 118.88886 * 305.65134 * 19 18 17 29 29 C 1.52102 * 110.51484 * 276.66154 * 5 4 2 30 30 H 1.09002 * 109.46984 * 181.08626 * 1 2 3 31 31 H 1.08999 * 109.46964 * 301.07741 * 1 2 3 32 32 H 1.08998 * 109.47209 * 61.08192 * 1 2 3 33 33 H 1.08995 * 110.73298 * 100.73103 * 4 2 1 34 34 H 1.08996 * 110.89114 * 337.49031 * 4 2 1 35 35 H 1.08994 * 110.38087 * 82.74298 * 6 5 4 36 36 H 1.09004 * 110.37746 * 205.09433 * 6 5 4 37 37 H 1.09001 * 109.54314 * 302.97941 * 12 10 8 38 38 H 1.08992 * 109.54362 * 63.24795 * 12 10 8 39 39 H 1.08996 * 109.51749 * 176.88186 * 13 12 10 40 40 H 1.08999 * 109.52302 * 297.01420 * 13 12 10 41 41 H 1.09000 * 109.48116 * 62.37747 * 14 13 12 42 42 H 1.09000 * 109.47689 * 182.39715 * 14 13 12 43 43 H 1.08998 * 109.48149 * 178.85516 * 16 15 14 44 44 H 1.09005 * 109.47585 * 58.82117 * 16 15 14 45 45 H 1.08998 * 109.48087 * 304.12723 * 17 5 4 46 46 H 1.08996 * 109.47591 * 184.10329 * 17 5 4 47 47 H 1.08996 * 109.60799 * 293.53665 * 18 17 5 48 48 H 1.09003 * 109.73286 * 173.13410 * 18 17 5 49 49 H 0.96992 * 120.00374 * 179.97438 * 23 22 20 50 50 H 1.09002 * 109.59558 * 174.10790 * 28 19 18 51 51 H 1.08998 * 109.59536 * 294.58360 * 28 19 18 52 52 H 1.08996 * 109.47851 * 55.88365 * 29 5 4 53 53 H 1.09004 * 109.47351 * 175.89472 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 6 2.0552 -0.7499 -1.2440 5 6 3.2710 -1.5242 -0.6909 6 6 2.8172 -1.8800 0.7382 7 7 2.0302 -0.7141 1.1846 8 6 1.8066 -0.3618 2.4661 9 8 1.0621 0.5612 2.7203 10 6 2.4816 -1.1151 3.5834 11 1 2.7242 -2.1235 3.2483 12 6 1.5425 -1.1891 4.7913 13 6 2.2675 -1.8878 5.9457 14 6 3.5597 -1.1293 6.2599 15 8 4.3733 -1.0704 5.0866 16 6 3.7655 -0.3865 3.9889 17 6 3.5160 -2.7846 -1.5065 18 6 3.8912 -2.3987 -2.9424 19 7 5.0142 -1.4521 -2.8973 20 6 6.1662 -1.7051 -3.5931 21 1 6.5255 -2.7186 -3.6925 22 6 6.8722 -0.6586 -4.1706 23 7 8.0857 -0.8621 -4.6378 24 14 6.0999 1.0385 -4.2845 25 1 6.4667 1.8309 -3.0834 26 1 6.5964 1.7275 -5.5027 27 1 4.6226 0.9062 -4.3581 28 6 4.8826 -0.2326 -2.0883 29 6 4.5016 -0.6309 -0.6574 30 1 -0.3633 -1.0275 0.0195 31 1 -0.3633 0.5305 0.8802 32 1 -0.3633 0.4969 -0.8995 33 1 2.3648 -0.0462 -2.0166 34 1 1.3026 -1.4376 -1.6297 35 1 2.1960 -2.7755 0.7274 36 1 3.6818 -2.0247 1.3861 37 1 1.2592 -0.1814 5.0953 38 1 0.6501 -1.7555 4.5251 39 1 1.6262 -1.8956 6.8269 40 1 2.5058 -2.9122 5.6594 41 1 3.3174 -0.1177 6.5855 42 1 4.1010 -1.6463 7.0522 43 1 4.4552 -0.3683 3.1450 44 1 3.5259 0.6349 4.2848 45 1 2.6108 -3.3917 -1.5182 46 1 4.3302 -3.3546 -1.0589 47 1 3.0369 -1.9295 -3.4301 48 1 4.1858 -3.2892 -3.4978 49 1 8.5789 -0.1311 -5.0416 50 1 5.8315 0.3036 -2.0783 51 1 4.1047 0.4038 -2.5102 52 1 4.2843 0.2654 -0.0764 53 1 5.3298 -1.1702 -0.1976 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086908509.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:55 Heat of formation + Delta-G solvation = -87.928918 kcal Electronic energy + Delta-G solvation = -31649.078728 eV Core-core repulsion = 27712.759637 eV Total energy + Delta-G solvation = -3936.319091 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.99987 -40.63715 -39.35536 -37.65486 -34.82141 -34.73710 -33.26265 -33.00602 -31.97548 -31.76107 -28.86015 -27.19483 -26.14998 -25.78691 -25.34648 -24.42146 -23.04736 -22.63394 -21.26169 -19.94416 -19.81093 -18.55107 -18.12694 -17.47946 -17.33988 -17.19636 -16.80389 -16.11031 -15.93109 -15.68564 -15.47375 -15.32059 -15.09218 -14.98049 -14.70833 -14.53942 -14.30066 -14.05778 -13.97161 -13.64854 -13.56338 -13.47698 -13.35262 -13.26019 -12.88515 -12.66367 -12.58837 -12.25946 -12.16884 -12.09408 -12.06558 -11.95776 -11.89154 -11.57657 -11.49356 -11.40510 -11.20233 -11.06332 -10.83332 -10.68999 -10.49080 -9.68146 -8.73835 -8.15492 -5.56821 1.29872 1.39405 1.48318 1.48330 1.89351 2.41470 2.83563 3.12850 3.35366 3.35988 3.46408 3.59800 3.73416 3.77411 3.80564 3.95688 4.08703 4.11348 4.14367 4.19540 4.25722 4.37937 4.40989 4.41633 4.51381 4.54779 4.56808 4.65920 4.70455 4.72964 4.76639 4.78096 4.80455 4.85979 4.86878 4.96381 5.00792 5.04777 5.06110 5.08542 5.18046 5.23929 5.24873 5.28272 5.30714 5.38521 5.42640 5.58982 5.95760 6.11530 6.17995 6.49210 6.98385 7.07972 7.64739 8.08447 9.04595 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015430 B = 0.003347 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.262081 B = 8362.697730 C = 9047.191775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.133 3.867 3 H 0.057 0.943 4 C -0.114 4.114 5 C -0.055 4.055 6 C 0.111 3.889 7 N -0.608 5.608 8 C 0.534 3.466 9 O -0.575 6.575 10 C -0.133 4.133 11 H 0.112 0.888 12 C -0.104 4.104 13 C -0.147 4.147 14 C 0.048 3.952 15 O -0.390 6.390 16 C 0.079 3.921 17 C -0.107 4.107 18 C 0.143 3.857 19 N -0.619 5.619 20 C -0.244 4.244 21 H 0.048 0.952 22 C -0.033 4.033 23 N -0.964 5.964 24 Si 0.950 3.050 25 H -0.281 1.281 26 H -0.314 1.314 27 H -0.252 1.252 28 C 0.123 3.877 29 C -0.109 4.109 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.053 0.947 42 H 0.114 0.886 43 H 0.097 0.903 44 H 0.050 0.950 45 H 0.095 0.905 46 H 0.059 0.941 47 H 0.037 0.963 48 H 0.053 0.947 49 H 0.260 0.740 50 H 0.039 0.961 51 H 0.034 0.966 52 H 0.061 0.939 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.998 -3.150 19.875 26.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.030 3.970 3 H 0.075 0.925 4 C -0.151 4.151 5 C -0.056 4.056 6 C -0.011 4.011 7 N -0.340 5.340 8 C 0.324 3.676 9 O -0.455 6.455 10 C -0.154 4.154 11 H 0.130 0.870 12 C -0.142 4.142 13 C -0.185 4.185 14 C -0.028 4.028 15 O -0.309 6.309 16 C 0.001 3.999 17 C -0.146 4.146 18 C 0.019 3.981 19 N -0.344 5.344 20 C -0.375 4.375 21 H 0.066 0.934 22 C -0.227 4.227 23 N -0.610 5.610 24 Si 0.779 3.221 25 H -0.208 1.208 26 H -0.243 1.243 27 H -0.176 1.176 28 C -0.001 4.001 29 C -0.148 4.148 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.132 0.868 43 H 0.115 0.885 44 H 0.068 0.932 45 H 0.113 0.887 46 H 0.078 0.922 47 H 0.055 0.945 48 H 0.072 0.928 49 H 0.069 0.931 50 H 0.058 0.942 51 H 0.052 0.948 52 H 0.080 0.920 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.116 -2.673 19.999 26.459 hybrid contribution 0.254 1.247 -0.659 1.433 sum -16.862 -1.426 19.340 25.698 Atomic orbital electron populations 1.22037 0.93979 1.02528 1.02357 1.21611 0.94999 0.95654 0.84688 0.92485 1.22769 0.97146 0.99546 0.95675 1.20891 0.94174 0.96082 0.94444 1.22506 0.95587 0.88351 0.94634 1.48734 1.51756 1.28811 1.04725 1.20447 0.80952 0.83545 0.82675 1.90657 1.38927 1.32204 1.83677 1.21959 0.97411 1.01536 0.94530 0.87004 1.21469 0.97509 1.01785 0.93486 1.22174 0.97066 1.00260 0.98955 1.22879 0.92245 1.00405 0.87307 1.87973 1.42872 1.77640 1.22399 1.22330 0.92951 0.94343 0.90277 1.21717 1.02079 0.95535 0.95279 1.21154 0.88813 0.92467 0.95658 1.44416 1.13807 1.22806 1.53385 1.18829 0.99332 0.93756 1.25542 0.93395 1.26113 0.96779 1.02092 0.97748 1.69903 1.12255 1.33448 1.45377 0.85852 0.79851 0.80685 0.75673 1.20779 1.24339 1.17593 1.21408 0.98079 0.89092 0.91562 1.21688 0.97376 0.99235 0.96482 0.91685 0.93303 0.90641 0.90935 0.88373 0.88655 0.89611 0.91896 0.90841 0.88518 0.90260 0.92837 0.86836 0.88520 0.93183 0.88651 0.92200 0.94493 0.92811 0.93066 0.94226 0.94797 0.91998 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.09 71.98 0.65 -2.48 16 2 C 0.13 3.05 3.12 45.38 0.14 3.19 16 3 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 4 C -0.11 -2.52 4.45 31.56 0.14 -2.38 16 5 C -0.06 -1.31 0.55 -51.92 -0.03 -1.33 16 6 C 0.11 2.08 5.24 86.55 0.45 2.54 16 7 N -0.61 -13.30 3.06 -788.83 -2.41 -15.71 16 8 C 0.53 12.76 6.68 87.66 0.59 13.34 16 9 O -0.57 -17.61 15.08 -3.04 -0.05 -17.66 16 10 C -0.13 -2.46 2.26 -11.45 -0.03 -2.49 16 11 H 0.11 1.77 6.76 -2.39 -0.02 1.76 16 12 C -0.10 -1.71 5.02 30.72 0.15 -1.56 16 13 C -0.15 -1.75 6.14 30.69 0.19 -1.56 16 14 C 0.05 0.67 6.84 72.01 0.49 1.16 16 15 O -0.39 -7.86 10.77 -148.98 -1.60 -9.46 16 16 C 0.08 1.57 6.11 72.01 0.44 2.01 16 17 C -0.11 -2.65 4.84 30.42 0.15 -2.50 16 18 C 0.14 4.89 6.25 86.41 0.54 5.43 16 19 N -0.62 -27.30 2.67 -698.47 -1.86 -29.17 16 20 C -0.24 -13.53 10.01 84.04 0.84 -12.69 16 21 H 0.05 2.93 8.06 -2.91 -0.02 2.90 16 22 C -0.03 -1.90 5.34 84.86 0.45 -1.44 16 23 N -0.96 -60.66 13.97 21.65 0.30 -60.36 16 24 Si 0.95 46.52 24.35 68.60 1.67 48.19 16 25 H -0.28 -13.25 6.74 99.48 0.67 -12.58 16 26 H -0.31 -15.79 7.11 99.48 0.71 -15.09 16 27 H -0.25 -11.49 6.29 99.48 0.63 -10.87 16 28 C 0.12 4.91 3.85 86.41 0.33 5.25 16 29 C -0.11 -3.33 4.85 30.41 0.15 -3.19 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.05 1.22 6.74 -2.39 -0.02 1.21 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.07 1.87 6.17 -2.39 -0.01 1.86 16 34 H 0.10 1.81 7.69 -2.39 -0.02 1.79 16 35 H 0.10 1.40 7.99 -2.39 -0.02 1.38 16 36 H 0.09 1.53 7.16 -2.39 -0.02 1.51 16 37 H 0.06 1.23 7.76 -2.39 -0.02 1.21 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.11 1.16 8.14 -2.39 -0.02 1.15 16 43 H 0.10 1.95 8.14 -2.39 -0.02 1.94 16 44 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 45 H 0.10 1.72 8.09 -2.39 -0.02 1.70 16 46 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.04 1.18 7.62 -2.39 -0.02 1.16 16 48 H 0.05 1.92 7.93 -2.39 -0.02 1.90 16 49 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 50 H 0.04 1.81 4.90 -2.39 -0.01 1.80 16 51 H 0.03 1.32 5.19 -2.39 -0.01 1.31 16 52 H 0.06 1.79 7.82 -2.39 -0.02 1.77 16 53 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 Total: -1.00 -70.64 386.53 2.46 -68.18 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.76 Total: 14.71 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 5.66 Total: 1.28 kcal Atomic # 7 Polarization: -101.27 SS G_CDS: -3.97 Total: -105.24 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -1.65 Total: -27.12 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.67 Total: 48.19 kcal Total: -70.64 2.46 -68.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086908509.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.753 kcal (2) G-P(sol) polarization free energy of solvation -70.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds