Wall clock time and date at job start Tue Mar 31 2020 19:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.40081 * 2 1 4 4 C 1.55239 * 110.32907 * 122.41501 * 2 1 3 5 5 C 1.54511 * 101.43789 * 155.44496 * 4 2 1 6 6 C 1.53694 * 103.64677 * 325.00826 * 5 4 2 7 7 N 1.47178 * 107.11162 * 21.54838 * 6 5 4 8 8 C 1.34770 * 125.66391 * 181.46429 * 7 6 5 9 9 O 1.21286 * 120.00180 * 184.65294 * 8 7 6 10 10 C 1.50701 * 120.00050 * 4.65392 * 8 7 6 11 11 H 1.09000 * 109.52133 * 310.55774 * 10 8 7 12 12 C 1.53185 * 109.52282 * 190.43560 * 10 8 7 13 13 C 1.53173 * 109.10783 * 183.06493 * 12 10 8 14 14 C 1.53283 * 109.06335 * 56.94350 * 13 12 10 15 15 O 1.42913 * 109.45958 * 302.44166 * 14 13 12 16 16 C 1.42898 * 114.09597 * 61.15906 * 15 14 13 17 17 C 1.52267 * 110.20725 * 83.42180 * 5 4 2 18 18 C 1.53317 * 109.42221 * 182.19924 * 17 5 4 19 19 N 1.46934 * 108.70485 * 306.49108 * 18 17 5 20 20 C 1.36929 * 120.56181 * 234.25110 * 19 18 17 21 21 H 1.08005 * 120.00054 * 150.83513 * 20 19 18 22 22 C 1.38810 * 120.00253 * 330.83442 * 20 19 18 23 23 N 1.31629 * 120.00003 * 166.70914 * 22 20 19 24 24 Si 1.86794 * 120.00259 * 346.70427 * 22 20 19 25 25 H 1.48506 * 109.47038 * 95.24915 * 24 22 20 26 26 H 1.48500 * 109.47430 * 215.24858 * 24 22 20 27 27 H 1.48501 * 109.46960 * 335.24933 * 24 22 20 28 28 C 1.46934 * 118.86893 * 54.23875 * 19 18 17 29 29 C 1.52284 * 110.20738 * 206.61172 * 5 4 2 30 30 H 1.09000 * 109.47148 * 180.80254 * 1 2 3 31 31 H 1.09002 * 109.46756 * 300.80456 * 1 2 3 32 32 H 1.08998 * 109.47118 * 60.80126 * 1 2 3 33 33 H 1.09004 * 111.20015 * 37.34836 * 4 2 1 34 34 H 1.09004 * 110.94427 * 273.42632 * 4 2 1 35 35 H 1.08994 * 109.91376 * 262.17478 * 6 5 4 36 36 H 1.09003 * 110.06361 * 140.99943 * 6 5 4 37 37 H 1.08992 * 109.54008 * 302.97773 * 12 10 8 38 38 H 1.09002 * 109.54401 * 63.15630 * 12 10 8 39 39 H 1.09000 * 109.52210 * 176.92496 * 13 12 10 40 40 H 1.08994 * 109.52997 * 297.12080 * 13 12 10 41 41 H 1.08995 * 109.46070 * 182.44734 * 14 13 12 42 42 H 1.08998 * 109.46908 * 62.44304 * 14 13 12 43 43 H 1.08992 * 109.48107 * 178.86024 * 16 15 14 44 44 H 1.09002 * 109.48398 * 58.82493 * 16 15 14 45 45 H 1.09002 * 109.48055 * 302.18381 * 17 5 4 46 46 H 1.09005 * 109.47737 * 62.21442 * 17 5 4 47 47 H 1.09005 * 109.59856 * 186.72714 * 18 17 5 48 48 H 1.08993 * 109.72586 * 66.33193 * 18 17 5 49 49 H 0.96998 * 119.99724 * 180.02562 * 23 22 20 50 50 H 1.09004 * 109.59113 * 185.99097 * 28 19 18 51 51 H 1.08992 * 109.73173 * 65.59526 * 28 19 18 52 52 H 1.08997 * 109.47637 * 297.77296 * 29 5 4 53 53 H 1.08998 * 109.47754 * 57.80773 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9100 1.0216 0.0000 4 6 2.0693 -0.7803 1.2289 5 6 3.4675 -1.2091 0.7301 6 6 3.2521 -1.4749 -0.7683 7 7 2.0429 -0.7380 -1.1694 8 6 1.4980 -0.7337 -2.4021 9 8 0.5458 -0.0218 -2.6417 10 6 2.0719 -1.6135 -3.4827 11 1 3.1527 -1.4785 -3.5265 12 6 1.4538 -1.2358 -4.8324 13 6 1.9855 -2.1850 -5.9106 14 6 1.6670 -3.6292 -5.5074 15 8 2.2448 -3.9052 -4.2297 16 6 1.7500 -3.0781 -3.1747 17 6 4.4685 -0.0805 0.9365 18 6 5.8353 -0.5042 0.3861 19 7 6.2098 -1.7890 0.9927 20 6 7.4086 -1.9306 1.6391 21 1 7.5050 -2.6384 2.4492 22 6 8.5000 -1.1646 1.2532 23 7 9.5652 -1.1014 2.0238 24 14 8.4571 -0.2235 -0.3598 25 1 8.0220 1.1736 -0.1064 26 1 9.8129 -0.2175 -0.9657 27 1 7.5023 -0.8784 -1.2897 28 6 5.2759 -2.9191 0.8941 29 6 3.9129 -2.4797 1.4416 30 1 -0.3633 -1.0276 0.0144 31 1 -0.3633 0.5263 0.8827 32 1 -0.3633 0.5013 -0.8971 33 1 1.4487 -1.6494 1.4474 34 1 2.1477 -0.1296 2.0999 35 1 3.1104 -2.5419 -0.9395 36 1 4.1101 -1.1184 -1.3384 37 1 0.3689 -1.3220 -4.7734 38 1 1.7250 -0.2103 -5.0835 39 1 1.5084 -1.9572 -6.8638 40 1 3.0645 -2.0628 -6.0037 41 1 2.0807 -4.3128 -6.2487 42 1 0.5864 -3.7616 -5.4539 43 1 2.2235 -3.3647 -2.2357 44 1 0.6705 -3.2031 -3.0906 45 1 4.1253 0.8105 0.4107 46 1 4.5568 0.1369 2.0010 47 1 6.5807 0.2501 0.6379 48 1 5.7777 -0.6141 -0.6968 49 1 10.3277 -0.5658 1.7543 50 1 5.6527 -3.7569 1.4808 51 1 5.1715 -3.2203 -0.1482 52 1 3.9957 -2.2873 2.5112 53 1 3.1806 -3.2684 1.2695 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086908510.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:59 Heat of formation + Delta-G solvation = -80.262117 kcal Electronic energy + Delta-G solvation = -31999.567374 eV Core-core repulsion = 28063.580740 eV Total energy + Delta-G solvation = -3935.986634 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.04875 -40.59695 -39.39129 -37.66717 -34.83964 -34.71483 -33.48809 -32.90572 -32.04430 -31.65840 -28.93180 -26.98202 -26.21054 -25.84480 -25.26065 -24.46824 -23.36687 -22.37416 -21.20511 -20.32658 -19.65911 -18.58512 -18.09686 -17.51075 -17.26602 -17.16610 -16.94278 -16.22308 -15.99072 -15.79088 -15.43643 -15.27012 -15.00056 -14.91531 -14.80316 -14.61059 -14.36442 -14.11008 -13.89414 -13.68608 -13.53868 -13.49828 -13.21393 -13.08033 -12.84828 -12.64434 -12.62420 -12.31452 -12.21623 -12.16809 -12.09332 -12.03446 -11.88026 -11.63139 -11.46297 -11.37434 -11.15305 -11.01118 -10.76404 -10.66941 -10.43597 -9.68176 -8.84228 -8.13534 -5.49290 1.28339 1.39798 1.47367 1.48705 1.89130 2.41314 2.84051 3.12721 3.33225 3.35111 3.44783 3.57688 3.69175 3.76391 3.77492 3.93632 4.06852 4.08740 4.11205 4.17099 4.27618 4.33572 4.37232 4.43837 4.46890 4.50899 4.56623 4.64087 4.69881 4.72233 4.73775 4.78943 4.81536 4.83425 4.87480 4.98504 5.00048 5.03484 5.07221 5.13636 5.18195 5.20821 5.24833 5.26797 5.29965 5.33607 5.50776 5.56149 5.91255 6.13154 6.16114 6.47058 6.95532 7.07619 7.65430 8.05504 9.06676 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011950 B = 0.004068 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.630534 B = 6881.792073 C = 7987.867510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.129 3.871 3 H 0.068 0.932 4 C -0.107 4.107 5 C -0.054 4.054 6 C 0.107 3.893 7 N -0.610 5.610 8 C 0.536 3.464 9 O -0.566 6.566 10 C -0.140 4.140 11 H 0.099 0.901 12 C -0.100 4.100 13 C -0.151 4.151 14 C 0.050 3.950 15 O -0.391 6.391 16 C 0.078 3.922 17 C -0.112 4.112 18 C 0.119 3.881 19 N -0.618 5.618 20 C -0.240 4.240 21 H 0.054 0.946 22 C -0.039 4.039 23 N -0.966 5.966 24 Si 0.949 3.051 25 H -0.285 1.285 26 H -0.318 1.318 27 H -0.248 1.248 28 C 0.141 3.859 29 C -0.108 4.108 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.112 0.888 42 H 0.061 0.939 43 H 0.104 0.896 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.041 0.959 48 H 0.036 0.964 49 H 0.259 0.741 50 H 0.055 0.945 51 H 0.038 0.962 52 H 0.062 0.938 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.978 -2.489 -11.415 24.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.026 3.974 3 H 0.086 0.914 4 C -0.145 4.145 5 C -0.054 4.054 6 C -0.015 4.015 7 N -0.343 5.343 8 C 0.325 3.675 9 O -0.446 6.446 10 C -0.161 4.161 11 H 0.117 0.883 12 C -0.138 4.138 13 C -0.188 4.188 14 C -0.026 4.026 15 O -0.310 6.310 16 C 0.000 4.000 17 C -0.151 4.151 18 C -0.005 4.005 19 N -0.343 5.343 20 C -0.370 4.370 21 H 0.072 0.928 22 C -0.233 4.233 23 N -0.613 5.613 24 Si 0.779 3.221 25 H -0.212 1.212 26 H -0.248 1.248 27 H -0.171 1.171 28 C 0.016 3.984 29 C -0.147 4.147 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.088 0.912 41 H 0.130 0.870 42 H 0.079 0.921 43 H 0.122 0.878 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.082 0.918 47 H 0.059 0.941 48 H 0.054 0.946 49 H 0.068 0.932 50 H 0.073 0.927 51 H 0.056 0.944 52 H 0.081 0.919 53 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -22.247 -2.231 -11.579 25.179 hybrid contribution 0.936 1.073 -0.403 1.480 sum -21.310 -1.158 -11.981 24.475 Atomic orbital electron populations 1.22036 0.93510 1.02465 1.03175 1.22090 0.95236 0.95491 0.84549 0.91381 1.22935 0.94069 1.00946 0.96559 1.20851 0.95124 0.96150 0.93314 1.22303 0.86317 0.97205 0.95693 1.48747 1.28030 1.48224 1.09278 1.20320 0.82590 0.82536 0.82061 1.90620 1.29429 1.43480 1.81065 1.22001 1.02551 0.96687 0.94876 0.88287 1.21393 1.00612 0.99805 0.91993 1.22237 1.02299 0.95048 0.99244 1.22883 0.98499 0.96426 0.84758 1.87979 1.66918 1.58354 1.17746 1.22473 0.99396 0.86708 0.91383 1.21817 0.94401 0.97378 1.01528 1.21490 0.95707 0.87650 0.95701 1.44422 1.17367 1.07210 1.65309 1.18911 0.86935 1.21144 1.09978 0.92849 1.25940 0.95093 1.01369 1.00880 1.69911 1.07424 1.44835 1.39154 0.85942 0.75334 0.78511 0.82301 1.21219 1.24786 1.17149 1.21183 0.89363 0.89220 0.98615 1.21817 0.96973 0.96047 0.99866 0.92582 0.90256 0.92062 0.88770 0.88790 0.89420 0.92092 0.91264 0.91780 0.88476 0.91232 0.87032 0.92115 0.87790 0.92243 0.91377 0.91810 0.94126 0.94639 0.93179 0.92663 0.94374 0.91929 0.88930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 8.77 71.98 0.63 -2.45 16 2 C 0.13 2.73 3.43 45.57 0.16 2.88 16 3 H 0.07 1.55 7.74 -2.39 -0.02 1.53 16 4 C -0.11 -2.00 5.42 31.88 0.17 -1.83 16 5 C -0.05 -1.28 0.53 -51.91 -0.03 -1.31 16 6 C 0.11 2.47 4.39 86.48 0.38 2.85 16 7 N -0.61 -14.02 3.25 -788.21 -2.56 -16.58 16 8 C 0.54 13.31 6.82 87.66 0.60 13.90 16 9 O -0.57 -16.98 13.72 -3.05 -0.04 -17.02 16 10 C -0.14 -2.92 2.11 -11.45 -0.02 -2.94 16 11 H 0.10 2.16 7.94 -2.39 -0.02 2.14 16 12 C -0.10 -1.90 4.72 30.71 0.14 -1.76 16 13 C -0.15 -2.20 6.15 30.75 0.19 -2.01 16 14 C 0.05 0.74 6.85 72.08 0.49 1.24 16 15 O -0.39 -8.00 10.77 -148.98 -1.60 -9.60 16 16 C 0.08 1.48 6.03 72.01 0.43 1.91 16 17 C -0.11 -3.39 4.78 30.46 0.15 -3.24 16 18 C 0.12 4.71 3.82 86.40 0.33 5.04 16 19 N -0.62 -27.07 2.77 -698.59 -1.94 -29.01 16 20 C -0.24 -13.20 10.08 84.03 0.85 -12.36 16 21 H 0.05 3.23 8.06 -2.91 -0.02 3.20 16 22 C -0.04 -2.26 5.35 84.86 0.45 -1.80 16 23 N -0.97 -60.84 13.97 21.65 0.30 -60.53 16 24 Si 0.95 46.42 24.30 68.60 1.67 48.09 16 25 H -0.28 -13.44 6.79 99.48 0.68 -12.77 16 26 H -0.32 -16.09 7.11 99.48 0.71 -15.38 16 27 H -0.25 -11.18 5.83 99.48 0.58 -10.60 16 28 C 0.14 4.76 6.24 86.40 0.54 5.30 16 29 C -0.11 -2.72 4.71 30.46 0.14 -2.58 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.06 1.54 5.93 -2.39 -0.01 1.52 16 33 H 0.09 1.50 7.93 -2.38 -0.02 1.48 16 34 H 0.09 1.62 8.01 -2.38 -0.02 1.60 16 35 H 0.09 1.77 5.37 -2.39 -0.01 1.76 16 36 H 0.06 1.62 6.09 -2.39 -0.01 1.61 16 37 H 0.07 1.38 7.89 -2.39 -0.02 1.36 16 38 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.10 1.04 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.10 1.88 5.76 -2.39 -0.01 1.86 16 44 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 45 H 0.07 1.87 7.47 -2.39 -0.02 1.86 16 46 H 0.06 2.02 8.14 -2.38 -0.02 2.01 16 47 H 0.04 1.84 4.23 -2.38 -0.01 1.83 16 48 H 0.04 1.37 5.06 -2.39 -0.01 1.36 16 49 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 50 H 0.05 1.96 7.93 -2.39 -0.02 1.94 16 51 H 0.04 1.20 7.47 -2.39 -0.02 1.18 16 52 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 53 H 0.09 1.76 8.10 -2.39 -0.02 1.74 16 Total: -1.00 -69.42 379.42 2.16 -67.26 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.73 Total: 16.55 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 5.61 Total: 0.85 kcal Atomic # 7 Polarization: -101.93 SS G_CDS: -4.19 Total: -106.13 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -1.65 Total: -26.63 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 1.67 Total: 48.09 kcal Total: -69.42 2.16 -67.26 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086908510.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.999 kcal (2) G-P(sol) polarization free energy of solvation -69.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds