Wall clock time and date at job start Tue Mar 31 2020 19:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.98918 * 2 1 4 4 C 1.54468 * 109.98903 * 238.97418 * 2 1 3 5 5 C 1.54373 * 102.95019 * 219.35062 * 4 2 1 6 6 C 1.54142 * 102.47413 * 34.44930 * 5 4 2 7 7 N 1.47088 * 109.87809 * 121.07799 * 2 1 3 8 8 C 1.34776 * 125.62598 * 298.46376 * 7 2 1 9 9 O 1.21363 * 120.00513 * 359.71102 * 8 7 2 10 10 C 1.49093 * 119.99624 * 179.71505 * 8 7 2 11 11 O 1.20781 * 120.00121 * 0.02562 * 10 8 7 12 12 C 1.50704 * 119.99831 * 179.97438 * 10 8 7 13 13 C 1.53000 * 109.46716 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.47136 * 299.99995 * 12 10 8 15 15 C 1.52999 * 109.46826 * 60.00166 * 12 10 8 16 16 C 1.52103 * 110.56028 * 152.40229 * 5 4 2 17 17 C 1.53341 * 109.44139 * 182.79387 * 16 5 4 18 18 N 1.46929 * 108.68843 * 306.70538 * 17 16 5 19 19 C 1.36942 * 120.55450 * 234.36430 * 18 17 16 20 20 H 1.08002 * 119.99728 * 27.95088 * 19 18 17 21 21 C 1.38806 * 120.00364 * 207.95499 * 19 18 17 22 22 N 1.31628 * 120.00212 * 17.47328 * 21 19 18 23 23 Si 1.86802 * 120.00262 * 197.48087 * 21 19 18 24 24 H 1.48497 * 109.46779 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47514 * 119.99751 * 23 21 19 26 26 H 1.48502 * 109.46757 * 239.99721 * 23 21 19 27 27 C 1.46942 * 118.89803 * 54.34600 * 18 17 16 28 28 C 1.52101 * 110.55030 * 276.49935 * 5 4 2 29 29 H 1.09005 * 109.47026 * 300.37689 * 1 2 3 30 30 H 1.08998 * 109.46976 * 60.37123 * 1 2 3 31 31 H 1.09000 * 109.47002 * 180.37688 * 1 2 3 32 32 H 1.08998 * 110.86198 * 100.90279 * 4 2 1 33 33 H 1.08998 * 110.52710 * 337.64820 * 4 2 1 34 34 H 1.08996 * 110.37633 * 205.08793 * 6 5 4 35 35 H 1.08998 * 110.47446 * 82.78153 * 6 5 4 36 36 H 1.09004 * 109.47562 * 60.00186 * 13 12 10 37 37 H 1.09006 * 109.47012 * 180.02562 * 13 12 10 38 38 H 1.09007 * 109.47288 * 299.99790 * 13 12 10 39 39 H 1.09001 * 109.47324 * 60.00000 * 14 12 10 40 40 H 1.08996 * 109.46965 * 180.02562 * 14 12 10 41 41 H 1.09004 * 109.47207 * 299.99854 * 14 12 10 42 42 H 1.08999 * 109.47073 * 60.00141 * 15 12 10 43 43 H 1.09007 * 109.46351 * 179.97438 * 15 12 10 44 44 H 1.08996 * 109.47288 * 299.99243 * 15 12 10 45 45 H 1.09000 * 109.47932 * 302.78599 * 16 5 4 46 46 H 1.09000 * 109.47508 * 62.80537 * 16 5 4 47 47 H 1.09002 * 109.60796 * 186.94561 * 17 16 5 48 48 H 1.09001 * 109.73753 * 66.54366 * 17 16 5 49 49 H 0.96990 * 119.99955 * 180.02562 * 22 21 19 50 50 H 1.08999 * 109.60276 * 185.88748 * 27 18 17 51 51 H 1.08997 * 109.59984 * 65.40528 * 27 18 17 52 52 H 1.09000 * 109.47940 * 297.18473 * 28 5 4 53 53 H 1.09002 * 109.47834 * 57.19832 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 6 2.0580 -0.7482 -1.2440 5 6 3.2696 -1.5283 -0.6901 6 6 2.8122 -1.8831 0.7385 7 7 2.0301 -0.7140 1.1847 8 6 1.8061 -0.3619 2.4662 9 8 1.1447 0.6240 2.7180 10 6 2.3708 -1.1837 3.5747 11 8 3.0295 -2.1646 3.3242 12 6 2.1207 -0.7897 5.0076 13 6 2.8058 -1.7918 5.9389 14 6 2.6879 0.6090 5.2584 15 6 0.6152 -0.7860 5.2802 16 6 3.5106 -2.7897 -1.5051 17 6 4.6735 -3.5791 -0.8919 18 7 5.8322 -2.6852 -0.7612 19 6 7.0405 -3.0272 -1.3075 20 1 7.0783 -3.6676 -2.1764 21 6 8.2165 -2.5511 -0.7445 22 7 8.2123 -2.0713 0.4812 23 14 9.8051 -2.5909 -1.7264 24 1 9.5439 -3.1739 -3.0669 25 1 10.3269 -1.2092 -1.8801 26 1 10.8075 -3.4220 -1.0124 27 6 5.6729 -1.4177 -0.0349 28 6 4.5044 -0.6409 -0.6532 29 1 -0.3633 0.5197 0.8866 30 1 -0.3633 0.5081 -0.8933 31 1 -0.3633 -1.0276 0.0068 32 1 2.3718 -0.0452 -2.0156 33 1 1.3015 -1.4323 -1.6282 34 1 3.6753 -2.0323 1.3872 35 1 2.1874 -2.7762 0.7280 36 1 3.8784 -1.7941 5.7446 37 1 2.6246 -1.5072 6.9755 38 1 2.4021 -2.7885 5.7604 39 1 2.2003 1.3232 4.5949 40 1 2.5075 0.8937 6.2949 41 1 3.7605 0.6063 5.0642 42 1 0.2112 -1.7825 5.1015 43 1 0.4345 -0.5015 6.3168 44 1 0.1276 -0.0718 4.6167 45 1 2.6105 -3.4044 -1.4982 46 1 3.7572 -2.5177 -2.5314 47 1 4.9293 -4.4168 -1.5407 48 1 4.3870 -3.9524 0.0913 49 1 9.0340 -1.7383 0.8744 50 1 6.5875 -0.8308 -0.1188 51 1 5.4617 -1.6219 1.0147 52 1 4.7651 -0.3385 -1.6674 53 1 4.2978 0.2445 -0.0518 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086910539.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:29 Heat of formation + Delta-G solvation = -69.231917 kcal Electronic energy + Delta-G solvation = -32068.027853 eV Core-core repulsion = 28132.519525 eV Total energy + Delta-G solvation = -3935.508328 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.32861 -40.91250 -39.41935 -37.75170 -36.74057 -34.82596 -32.97816 -32.49812 -31.64550 -28.83339 -28.44087 -28.26980 -27.42216 -26.51212 -25.92501 -24.06425 -23.45140 -22.55764 -20.89336 -20.07546 -19.41813 -18.49902 -18.26719 -17.49843 -17.04242 -16.87257 -16.48782 -16.00920 -15.74093 -15.38783 -15.32033 -15.12671 -14.89573 -14.72852 -14.65321 -14.34261 -14.13099 -13.93148 -13.51253 -13.48926 -13.25846 -13.12587 -13.09334 -13.03726 -13.00296 -12.90222 -12.62909 -12.61167 -12.53388 -12.32131 -12.22644 -11.99811 -11.97785 -11.87973 -11.85285 -11.72160 -11.46192 -11.12537 -10.97008 -10.53630 -10.22591 -9.79944 -8.66106 -7.86779 -5.32183 -0.09758 1.44867 1.46743 1.54318 1.57368 1.87708 2.51086 2.80743 3.26245 3.45103 3.47540 3.61492 3.70649 3.82138 3.83153 3.86174 4.09232 4.19035 4.25740 4.27418 4.42641 4.52131 4.55208 4.62641 4.66726 4.68940 4.69815 4.72648 4.81349 4.81903 4.88498 4.89190 4.89559 4.94397 4.97516 5.00888 5.07417 5.14841 5.16919 5.23235 5.27325 5.29141 5.32596 5.34532 5.37910 5.40154 5.51617 5.65224 5.75562 5.89107 6.25837 6.39250 6.80237 7.15014 7.87427 8.38940 9.19310 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012635 B = 0.003973 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.541643 B = 7046.388721 C = 8431.548674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.125 3.875 3 H 0.071 0.929 4 C -0.107 4.107 5 C -0.057 4.057 6 C 0.110 3.890 7 N -0.586 5.586 8 C 0.484 3.516 9 O -0.523 6.523 10 C 0.350 3.650 11 O -0.433 6.433 12 C -0.092 4.092 13 C -0.134 4.134 14 C -0.140 4.140 15 C -0.135 4.135 16 C -0.103 4.103 17 C 0.137 3.863 18 N -0.607 5.607 19 C -0.258 4.258 20 H 0.070 0.930 21 C -0.053 4.053 22 N -0.938 5.938 23 Si 0.965 3.035 24 H -0.263 1.263 25 H -0.292 1.292 26 H -0.294 1.294 27 C 0.183 3.817 28 C -0.110 4.110 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.044 0.956 37 H 0.094 0.906 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.096 0.904 41 H 0.044 0.956 42 H 0.057 0.943 43 H 0.094 0.906 44 H 0.067 0.933 45 H 0.089 0.911 46 H 0.070 0.930 47 H 0.056 0.944 48 H 0.008 0.992 49 H 0.247 0.753 50 H 0.048 0.952 51 H -0.013 1.013 52 H 0.062 0.938 53 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.962 4.146 3.974 19.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 H 0.089 0.911 4 C -0.145 4.145 5 C -0.058 4.058 6 C -0.013 4.013 7 N -0.320 5.320 8 C 0.269 3.731 9 O -0.402 6.402 10 C 0.220 3.780 11 O -0.302 6.302 12 C -0.094 4.094 13 C -0.191 4.191 14 C -0.197 4.197 15 C -0.192 4.192 16 C -0.142 4.142 17 C 0.012 3.988 18 N -0.330 5.330 19 C -0.389 4.389 20 H 0.087 0.913 21 C -0.248 4.248 22 N -0.584 5.584 23 Si 0.793 3.207 24 H -0.187 1.187 25 H -0.218 1.218 26 H -0.222 1.222 27 C 0.057 3.943 28 C -0.149 4.149 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.063 0.937 37 H 0.113 0.887 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.115 0.885 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.113 0.887 44 H 0.086 0.914 45 H 0.107 0.893 46 H 0.089 0.911 47 H 0.074 0.926 48 H 0.026 0.974 49 H 0.057 0.943 50 H 0.066 0.934 51 H 0.005 0.995 52 H 0.081 0.919 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -18.839 4.182 4.113 19.731 hybrid contribution 1.640 -0.072 -0.073 1.643 sum -17.199 4.110 4.040 18.139 Atomic orbital electron populations 1.22049 0.92878 1.02628 1.03284 1.21916 0.95709 0.96133 0.83919 0.91083 1.22794 0.96443 0.99503 0.95741 1.20963 0.94724 0.96521 0.93577 1.22615 0.95047 0.87420 0.96184 1.48868 1.49810 1.28167 1.05114 1.20790 0.82313 0.86507 0.83451 1.90646 1.39508 1.26781 1.83246 1.25443 0.76192 0.82975 0.93347 1.90466 1.28638 1.24498 1.86642 1.21046 1.00157 0.98907 0.89289 1.21786 0.99751 0.97874 0.99668 1.21892 1.00034 0.93318 1.04471 1.21858 0.90377 1.02599 1.04336 1.21714 0.98503 0.95022 0.98977 1.21129 0.87860 0.92729 0.97077 1.44293 1.06979 1.17608 1.64155 1.19592 0.84139 1.28448 1.06696 0.91261 1.25794 1.00767 1.02209 0.95987 1.70224 1.27066 1.47325 1.13823 0.85242 0.79772 0.76911 0.78761 1.18737 1.21848 1.22174 1.20516 0.95701 0.86826 0.91226 1.21776 0.95279 0.97101 1.00767 0.92881 0.89106 0.92068 0.88494 0.88004 0.91251 0.90517 0.93668 0.88702 0.92423 0.91406 0.88506 0.93668 0.92418 0.88725 0.91382 0.89298 0.91135 0.92589 0.97376 0.94343 0.93382 0.99505 0.91941 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.10 71.98 0.66 -2.30 16 2 C 0.13 3.02 3.11 45.38 0.14 3.16 16 3 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 4 C -0.11 -2.33 5.43 31.56 0.17 -2.16 16 5 C -0.06 -1.71 0.54 -51.92 -0.03 -1.74 16 6 C 0.11 3.53 4.01 86.56 0.35 3.88 16 7 N -0.59 -17.37 3.06 -790.78 -2.42 -19.79 16 8 C 0.48 14.87 7.37 87.16 0.64 15.51 16 9 O -0.52 -16.25 12.43 -3.29 -0.04 -16.29 16 10 C 0.35 10.61 6.00 28.61 0.17 10.78 16 11 O -0.43 -15.59 13.41 -1.51 -0.02 -15.61 16 12 C -0.09 -2.14 0.76 -52.93 -0.04 -2.18 16 13 C -0.13 -2.88 7.76 71.98 0.56 -2.32 16 14 C -0.14 -3.04 8.29 71.98 0.60 -2.44 16 15 C -0.13 -2.49 8.29 71.98 0.60 -1.89 16 16 C -0.10 -3.10 4.83 30.41 0.15 -2.95 16 17 C 0.14 5.57 6.24 86.41 0.54 6.11 16 18 N -0.61 -30.52 2.98 -698.47 -2.08 -32.60 16 19 C -0.26 -14.28 9.57 84.03 0.80 -13.48 16 20 H 0.07 3.70 7.89 -2.91 -0.02 3.68 16 21 C -0.05 -2.98 4.90 84.86 0.42 -2.57 16 22 N -0.94 -57.10 11.20 21.65 0.24 -56.86 16 23 Si 0.96 45.42 29.59 68.60 2.03 47.45 16 24 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 26 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 27 C 0.18 9.06 5.02 86.41 0.43 9.49 16 28 C -0.11 -4.13 4.83 30.41 0.15 -3.98 16 29 H 0.05 1.22 6.88 -2.38 -0.02 1.21 16 30 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.10 1.89 8.01 -2.39 -0.02 1.87 16 33 H 0.10 1.75 7.69 -2.39 -0.02 1.74 16 34 H 0.07 2.82 4.26 -2.39 -0.01 2.81 16 35 H 0.08 2.30 7.97 -2.39 -0.02 2.28 16 36 H 0.04 1.14 8.10 -2.38 -0.02 1.12 16 37 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.06 1.27 8.10 -2.38 -0.02 1.25 16 39 H 0.07 1.64 6.43 -2.39 -0.02 1.62 16 40 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 42 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 44 H 0.07 1.43 6.43 -2.39 -0.02 1.42 16 45 H 0.09 2.10 8.10 -2.39 -0.02 2.08 16 46 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.06 2.21 7.93 -2.39 -0.02 2.19 16 48 H 0.01 0.35 7.64 -2.39 -0.02 0.33 16 49 H 0.25 14.62 8.31 -92.72 -0.77 13.84 16 50 H 0.05 2.73 6.01 -2.39 -0.01 2.72 16 51 H -0.01 -0.71 6.57 -2.39 -0.02 -0.73 16 52 H 0.06 2.30 8.14 -2.39 -0.02 2.29 16 53 H 0.05 1.78 7.85 -2.39 -0.02 1.77 16 Total: -1.00 -68.78 395.65 4.89 -63.89 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.88 Total: 18.89 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 6.30 Total: 10.92 kcal Atomic # 7 Polarization: -104.99 SS G_CDS: -4.26 Total: -109.24 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -0.06 Total: -31.90 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -68.78 4.89 -63.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086910539.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.338 kcal (2) G-P(sol) polarization free energy of solvation -68.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds