Wall clock time and date at job start Tue Mar 31 2020 19:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 110.31358 * 2 1 4 4 C 1.55014 * 110.35661 * 122.20515 * 2 1 3 5 5 C 1.54536 * 101.52585 * 155.24588 * 4 2 1 6 6 C 1.53682 * 103.64466 * 325.16913 * 5 4 2 7 7 N 1.47180 * 107.11065 * 21.55004 * 6 5 4 8 8 C 1.34781 * 125.66050 * 181.46073 * 7 6 5 9 9 O 1.21376 * 119.99757 * 180.02562 * 8 7 6 10 10 C 1.49083 * 120.00153 * 0.05311 * 8 7 6 11 11 O 1.20775 * 119.99967 * 359.97438 * 10 8 7 12 12 C 1.50707 * 119.99993 * 180.02562 * 10 8 7 13 13 C 1.53001 * 109.47114 * 179.97438 * 12 10 8 14 14 C 1.52996 * 109.47144 * 300.00083 * 12 10 8 15 15 C 1.53005 * 109.46757 * 60.00098 * 12 10 8 16 16 C 1.52277 * 110.16873 * 83.59397 * 5 4 2 17 17 C 1.53316 * 109.41548 * 62.85316 * 16 5 4 18 18 N 1.46928 * 108.70910 * 53.51544 * 17 16 5 19 19 C 1.36944 * 120.56090 * 125.76866 * 18 17 16 20 20 H 1.07996 * 119.99889 * 332.11513 * 19 18 17 21 21 C 1.38817 * 119.99702 * 152.12212 * 19 18 17 22 22 N 1.31616 * 119.99839 * 144.11996 * 21 19 18 23 23 Si 1.86797 * 119.99759 * 324.12116 * 21 19 18 24 24 H 1.48509 * 109.46858 * 270.00050 * 23 21 19 25 25 H 1.48495 * 109.47409 * 29.99657 * 23 21 19 26 26 H 1.48504 * 109.47075 * 150.00488 * 23 21 19 27 27 C 1.46920 * 118.87021 * 306.04310 * 18 17 16 28 28 C 1.52270 * 110.17087 * 206.72888 * 5 4 2 29 29 H 1.09008 * 109.46844 * 297.78937 * 1 2 3 30 30 H 1.08993 * 109.47835 * 57.79323 * 1 2 3 31 31 H 1.08997 * 109.46809 * 177.79528 * 1 2 3 32 32 H 1.09001 * 111.01561 * 37.18579 * 4 2 1 33 33 H 1.09001 * 111.01855 * 273.30324 * 4 2 1 34 34 H 1.08997 * 109.91046 * 140.92030 * 6 5 4 35 35 H 1.09005 * 109.90983 * 262.18530 * 6 5 4 36 36 H 1.08999 * 109.46667 * 59.99649 * 13 12 10 37 37 H 1.08991 * 109.47030 * 179.97438 * 13 12 10 38 38 H 1.09000 * 109.47160 * 300.00155 * 13 12 10 39 39 H 1.09006 * 109.47130 * 59.99668 * 14 12 10 40 40 H 1.09000 * 109.47490 * 179.97438 * 14 12 10 41 41 H 1.08997 * 109.47292 * 300.00192 * 14 12 10 42 42 H 1.08993 * 109.47610 * 60.00236 * 15 12 10 43 43 H 1.09000 * 109.46673 * 180.02562 * 15 12 10 44 44 H 1.09006 * 109.47129 * 299.99481 * 15 12 10 45 45 H 1.08997 * 109.47993 * 302.87119 * 16 5 4 46 46 H 1.09000 * 109.47836 * 182.83648 * 16 5 4 47 47 H 1.08999 * 109.59866 * 293.75015 * 17 16 5 48 48 H 1.09001 * 109.59784 * 173.28685 * 17 16 5 49 49 H 0.96995 * 120.00195 * 354.89999 * 22 21 19 50 50 H 1.08997 * 109.60229 * 173.72670 * 27 18 17 51 51 H 1.09001 * 109.59884 * 294.19169 * 27 18 17 52 52 H 1.09001 * 109.48009 * 57.13560 * 28 5 4 53 53 H 1.09002 * 109.47655 * 177.16334 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9085 1.0223 0.0000 4 6 2.0693 -0.7746 1.2297 5 6 3.4659 -1.2104 0.7320 6 6 3.2493 -1.4797 -0.7654 7 7 2.0430 -0.7391 -1.1686 8 6 1.4981 -0.7362 -2.4013 9 8 0.4975 -0.0852 -2.6210 10 6 2.1239 -1.5331 -3.4949 11 8 3.1195 -2.1809 -3.2763 12 6 1.5149 -1.5294 -4.8734 13 6 2.3450 -2.4200 -5.8001 14 6 0.0831 -2.0634 -4.7998 15 6 1.4989 -0.1004 -5.4199 16 6 4.4708 -0.0846 0.9358 17 6 4.6065 0.2126 2.4337 18 7 4.9212 -1.0391 3.1358 19 6 6.0192 -1.1237 3.9499 20 1 6.8800 -0.4992 3.7621 21 6 6.0255 -2.0122 5.0165 22 7 7.1380 -2.6310 5.3508 23 14 4.4552 -2.3294 5.9772 24 1 4.3604 -1.3654 7.1029 25 1 3.2837 -2.1601 5.0806 26 1 4.4734 -3.7146 6.5120 27 6 4.0414 -2.2002 2.9449 28 6 3.9060 -2.4799 1.4484 29 1 -0.3633 0.4792 0.9092 30 1 -0.3634 0.5477 -0.8694 31 1 -0.3633 -1.0269 -0.0395 32 1 1.4452 -1.6405 1.4507 33 1 2.1503 -0.1213 2.0985 34 1 4.1093 -1.1261 -1.3343 35 1 3.1032 -2.5467 -0.9334 36 1 2.3569 -3.4380 -5.4108 37 1 1.9043 -2.4176 -6.7969 38 1 3.3650 -2.0391 -5.8524 39 1 -0.5080 -1.4286 -4.1397 40 1 -0.3576 -2.0603 -5.7968 41 1 0.0945 -3.0814 -4.4104 42 1 2.5189 0.2801 -5.4724 43 1 1.0580 -0.0976 -6.4168 44 1 0.9077 0.5345 -4.7599 45 1 4.1246 0.8098 0.4177 46 1 5.4391 -0.3849 0.5355 47 1 3.6683 0.6182 2.8124 48 1 5.4092 0.9327 2.5923 49 1 7.9346 -2.5238 4.8079 50 1 4.4717 -3.0704 3.4404 51 1 3.0582 -1.9868 3.3643 52 1 3.1644 -3.2628 1.2892 53 1 4.8685 -2.8050 1.0535 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086910540.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:33 Heat of formation + Delta-G solvation = -64.916868 kcal Electronic energy + Delta-G solvation = -31557.849075 eV Core-core repulsion = 27622.527861 eV Total energy + Delta-G solvation = -3935.321214 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.33614 -41.01282 -39.48525 -37.84925 -36.70627 -34.90298 -33.02613 -32.89556 -31.97384 -28.88094 -28.37870 -28.25342 -27.33327 -26.71614 -25.23338 -24.42359 -23.39239 -22.64201 -21.21517 -20.05174 -19.49372 -18.87341 -18.15498 -17.70034 -17.08851 -16.72542 -16.38869 -16.12629 -16.01561 -15.51349 -15.36652 -15.25675 -15.04289 -14.78118 -14.66740 -14.40755 -14.12603 -13.99798 -13.76002 -13.73161 -13.44364 -13.16810 -13.13165 -13.06005 -13.03569 -12.90916 -12.59540 -12.50105 -12.40575 -12.26809 -12.16999 -11.96420 -11.95663 -11.74496 -11.63652 -11.62301 -11.32398 -11.12115 -11.05146 -10.39564 -10.18135 -9.82615 -8.96642 -8.55539 -5.40340 -0.11078 1.51010 1.53976 1.59205 1.77934 1.87086 2.62604 2.77561 2.98131 3.35311 3.46330 3.51540 3.61853 3.69884 3.84107 3.87045 4.04365 4.10606 4.23139 4.26848 4.38096 4.39691 4.49366 4.55522 4.62993 4.64067 4.67945 4.69243 4.71188 4.80141 4.83566 4.85746 4.90806 4.91626 4.95113 4.99181 5.01776 5.07825 5.12849 5.17255 5.17970 5.19471 5.26585 5.29506 5.31355 5.34760 5.43499 5.54269 5.82895 5.87248 6.26885 6.29902 6.80844 6.94674 7.67947 8.17602 8.81300 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022039 B = 0.002995 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.158840 B = 9347.820630 C = 9820.147284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.131 3.869 3 H 0.085 0.915 4 C -0.116 4.116 5 C -0.056 4.056 6 C 0.124 3.876 7 N -0.589 5.589 8 C 0.485 3.515 9 O -0.518 6.518 10 C 0.357 3.643 11 O -0.431 6.431 12 C -0.092 4.092 13 C -0.133 4.133 14 C -0.139 4.139 15 C -0.139 4.139 16 C -0.109 4.109 17 C 0.143 3.857 18 N -0.612 5.612 19 C -0.348 4.348 20 H 0.024 0.976 21 C -0.050 4.050 22 N -0.939 5.939 23 Si 1.063 2.937 24 H -0.298 1.298 25 H -0.230 1.230 26 H -0.301 1.301 27 C 0.142 3.858 28 C -0.114 4.114 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.091 0.909 44 H 0.066 0.934 45 H 0.077 0.923 46 H 0.045 0.955 47 H 0.045 0.955 48 H 0.042 0.958 49 H 0.251 0.749 50 H 0.039 0.961 51 H 0.049 0.951 52 H 0.080 0.920 53 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.549 3.611 -22.117 28.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.029 3.971 3 H 0.103 0.897 4 C -0.153 4.153 5 C -0.057 4.057 6 C 0.001 3.999 7 N -0.323 5.323 8 C 0.271 3.729 9 O -0.395 6.395 10 C 0.227 3.773 11 O -0.301 6.301 12 C -0.094 4.094 13 C -0.190 4.190 14 C -0.196 4.196 15 C -0.196 4.196 16 C -0.148 4.148 17 C 0.018 3.982 18 N -0.337 5.337 19 C -0.477 4.477 20 H 0.042 0.958 21 C -0.248 4.248 22 N -0.579 5.579 23 Si 0.888 3.112 24 H -0.226 1.226 25 H -0.154 1.154 26 H -0.229 1.229 27 C 0.017 3.983 28 C -0.153 4.153 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.110 0.890 44 H 0.085 0.915 45 H 0.095 0.905 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.061 0.939 49 H 0.060 0.940 50 H 0.058 0.942 51 H 0.066 0.934 52 H 0.099 0.901 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.155 2.826 -20.911 27.836 hybrid contribution 1.873 0.722 -0.755 2.145 sum -16.282 3.547 -21.666 27.333 Atomic orbital electron populations 1.22053 0.92833 1.02472 1.03663 1.22186 0.95764 0.95704 0.83433 0.89740 1.22966 0.94330 1.00987 0.97047 1.20902 0.95928 0.96041 0.92817 1.22150 0.86491 0.96563 0.94701 1.48848 1.27769 1.46535 1.09165 1.20864 0.85239 0.83769 0.83076 1.90652 1.24566 1.42840 1.81468 1.25331 0.83247 0.77158 0.91565 1.90430 1.22187 1.33538 1.83968 1.21036 0.98322 0.99828 0.90182 1.21782 0.99274 0.98569 0.99420 1.21881 0.92463 1.00712 1.04543 1.21886 1.02467 0.92445 1.02838 1.21773 0.97839 0.97704 0.97441 1.21128 0.98402 0.87716 0.90954 1.44378 1.29251 1.07828 1.52256 1.19883 0.92959 1.25080 1.09822 0.95801 1.27229 1.04920 0.95361 0.97245 1.71003 1.03728 1.38683 1.44476 0.84047 0.75602 0.75149 0.76446 1.22628 1.15352 1.22853 1.21336 0.93515 0.89152 0.94253 1.21785 1.00775 0.96313 0.96466 0.90103 0.90937 0.93086 0.89759 0.88787 0.91393 0.90768 0.92643 0.89151 0.92726 0.91463 0.89012 0.92686 0.92777 0.88983 0.91495 0.90489 0.93630 0.93720 0.93946 0.93992 0.94223 0.93375 0.90113 0.93573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.60 71.98 0.62 -2.41 16 2 C 0.13 2.85 3.44 45.49 0.16 3.00 16 3 H 0.08 1.80 7.75 -2.38 -0.02 1.78 16 4 C -0.12 -2.69 4.35 31.81 0.14 -2.55 16 5 C -0.06 -1.53 0.55 -51.91 -0.03 -1.56 16 6 C 0.12 3.15 4.67 86.48 0.40 3.56 16 7 N -0.59 -14.10 3.25 -790.66 -2.57 -16.67 16 8 C 0.48 11.57 7.36 87.16 0.64 12.22 16 9 O -0.52 -12.92 11.11 -3.33 -0.04 -12.95 16 10 C 0.36 7.85 6.00 28.60 0.17 8.02 16 11 O -0.43 -11.10 13.74 -1.49 -0.02 -11.12 16 12 C -0.09 -1.49 0.76 -52.92 -0.04 -1.53 16 13 C -0.13 -1.87 7.76 71.98 0.56 -1.31 16 14 C -0.14 -1.94 8.29 71.98 0.60 -1.34 16 15 C -0.14 -1.97 8.29 71.98 0.60 -1.38 16 16 C -0.11 -3.28 4.74 30.46 0.14 -3.13 16 17 C 0.14 5.24 6.19 86.40 0.53 5.78 16 18 N -0.61 -27.74 2.70 -699.54 -1.89 -29.63 16 19 C -0.35 -19.53 9.70 84.03 0.82 -18.71 16 20 H 0.02 1.50 8.06 -2.91 -0.02 1.47 16 21 C -0.05 -2.89 4.82 84.86 0.41 -2.48 16 22 N -0.94 -59.14 13.70 21.65 0.30 -58.84 16 23 Si 1.06 50.08 26.99 68.60 1.85 51.93 16 24 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 25 H -0.23 -9.23 4.73 99.48 0.47 -8.75 16 26 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 27 C 0.14 5.64 4.04 86.25 0.35 5.99 16 28 C -0.11 -3.66 4.70 30.30 0.14 -3.51 16 29 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.07 1.62 6.09 -2.39 -0.01 1.60 16 31 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.87 7.92 -2.39 -0.02 1.85 16 33 H 0.09 2.23 6.08 -2.39 -0.01 2.22 16 34 H 0.07 1.83 7.41 -2.39 -0.02 1.82 16 35 H 0.07 1.94 7.20 -2.38 -0.02 1.92 16 36 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 37 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 39 H 0.07 1.14 6.43 -2.38 -0.02 1.13 16 40 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 44 H 0.07 1.15 6.43 -2.38 -0.02 1.14 16 45 H 0.08 1.97 7.47 -2.39 -0.02 1.95 16 46 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.05 1.47 6.47 -2.39 -0.02 1.46 16 48 H 0.04 1.66 7.93 -2.39 -0.02 1.64 16 49 H 0.25 16.00 8.73 -92.71 -0.81 15.19 16 50 H 0.04 1.78 5.78 -2.39 -0.01 1.76 16 51 H 0.05 1.76 6.05 -2.39 -0.01 1.74 16 52 H 0.08 2.20 8.11 -2.39 -0.02 2.18 16 53 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -66.86 388.07 4.44 -62.41 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.61 Total: 16.22 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: 6.21 Total: -1.35 kcal Atomic # 7 Polarization: -100.97 SS G_CDS: -4.16 Total: -105.14 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.06 Total: -24.07 kcal Atomic # 14 Polarization: 50.08 SS G_CDS: 1.85 Total: 51.93 kcal Total: -66.86 4.44 -62.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086910540.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.505 kcal (2) G-P(sol) polarization free energy of solvation -66.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds