Wall clock time and date at job start Tue Mar 31 2020 19:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.31358 * 2 1 4 4 C 1.55024 * 110.44916 * 237.73487 * 2 1 3 5 5 C 1.54515 * 101.53514 * 204.71838 * 4 2 1 6 6 C 1.53695 * 103.64806 * 34.82010 * 5 4 2 7 7 N 1.47182 * 107.10770 * 338.45493 * 6 5 4 8 8 C 1.34783 * 125.65980 * 178.46928 * 7 6 5 9 9 O 1.21277 * 119.99782 * 180.02562 * 8 7 6 10 10 C 1.50702 * 120.00117 * 0.02960 * 8 7 6 11 11 C 1.52995 * 109.47281 * 179.97438 * 10 8 7 12 12 H 1.08997 * 110.80585 * 305.70748 * 11 10 8 13 13 C 1.54805 * 110.90813 * 182.06924 * 11 10 8 14 14 C 1.54097 * 104.19062 * 220.92072 * 13 11 10 15 15 O 1.43751 * 107.29511 * 357.97607 * 14 13 11 16 16 C 1.44423 * 106.99542 * 26.48265 * 15 14 13 17 17 C 1.52277 * 110.20385 * 276.41031 * 5 4 2 18 18 C 1.53315 * 109.41041 * 177.77717 * 17 5 4 19 19 N 1.46926 * 108.70541 * 53.51494 * 18 17 5 20 20 C 1.36943 * 120.56083 * 125.78046 * 19 18 17 21 21 H 1.07997 * 119.99744 * 332.19953 * 20 19 18 22 22 C 1.38806 * 120.00050 * 152.19822 * 20 19 18 23 23 N 1.31621 * 120.00043 * 342.68880 * 22 20 19 24 24 Si 1.86801 * 119.99741 * 162.68560 * 22 20 19 25 25 H 1.48510 * 109.46821 * 179.97438 * 24 22 20 26 26 H 1.48495 * 109.47290 * 299.99780 * 24 22 20 27 27 H 1.48490 * 109.47244 * 60.00190 * 24 22 20 28 28 C 1.46924 * 118.88326 * 306.04912 * 19 18 17 29 29 C 1.52276 * 110.21086 * 153.22343 * 5 4 2 30 30 H 1.08996 * 109.47680 * 299.25069 * 1 2 3 31 31 H 1.08999 * 109.46861 * 59.25577 * 1 2 3 32 32 H 1.09003 * 109.47128 * 179.24814 * 1 2 3 33 33 H 1.08999 * 111.01401 * 86.65483 * 4 2 1 34 34 H 1.08996 * 111.00986 * 322.78237 * 4 2 1 35 35 H 1.09001 * 109.91189 * 97.82166 * 6 5 4 36 36 H 1.08996 * 109.91047 * 219.09193 * 6 5 4 37 37 H 1.08999 * 109.46730 * 299.99923 * 10 8 7 38 38 H 1.09002 * 109.47156 * 59.99554 * 10 8 7 39 39 H 1.08994 * 110.49016 * 339.60356 * 13 11 10 40 40 H 1.09007 * 110.48560 * 102.11716 * 13 11 10 41 41 H 1.09000 * 109.87856 * 117.39490 * 14 13 11 42 42 H 1.09002 * 109.88522 * 238.54836 * 14 13 11 43 43 H 1.09006 * 110.65057 * 201.48060 * 16 15 14 44 44 H 1.09002 * 110.59810 * 78.47939 * 16 15 14 45 45 H 1.09001 * 109.47991 * 57.79902 * 17 5 4 46 46 H 1.08999 * 109.48572 * 297.76617 * 17 5 4 47 47 H 1.08991 * 109.60418 * 293.74576 * 18 17 5 48 48 H 1.09000 * 109.59630 * 173.27408 * 18 17 5 49 49 H 0.97008 * 120.00118 * 180.02562 * 23 22 20 50 50 H 1.08997 * 109.59984 * 173.71995 * 28 19 18 51 51 H 1.09005 * 109.59631 * 294.18810 * 28 19 18 52 52 H 1.08992 * 109.48100 * 302.20218 * 29 5 4 53 53 H 1.09004 * 109.48198 * 62.23067 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9084 1.0222 0.0000 4 6 2.0716 -0.7754 -1.2283 5 6 3.4681 -1.2088 -0.7288 6 6 3.2507 -1.4763 0.7690 7 7 2.0430 -0.7368 1.1700 8 6 1.4962 -0.7340 2.4020 9 8 0.4950 -0.0852 2.6195 10 6 2.1292 -1.5370 3.5091 11 6 1.3183 -1.3609 4.7945 12 1 1.2038 -0.3048 5.0385 13 6 1.9696 -2.1318 5.9685 14 6 0.7770 -2.7574 6.7174 15 8 -0.4207 -2.3276 6.0486 16 6 -0.0630 -2.0542 4.6764 17 6 4.4724 -0.0824 -0.9325 18 6 5.8372 -0.5107 -0.3809 19 7 6.2090 -1.7956 -0.9888 20 6 7.4087 -1.9397 -1.6333 21 1 7.8801 -1.0843 -2.0944 22 6 8.0188 -3.1850 -1.6940 23 7 7.6470 -4.1409 -0.8691 24 14 9.3675 -3.5042 -2.9464 25 1 9.8523 -4.9010 -2.8065 26 1 8.8298 -3.3012 -4.3156 27 1 10.4930 -2.5644 -2.7122 28 6 5.2695 -2.9215 -0.8989 29 6 3.9109 -2.4793 -1.4419 30 1 -0.3634 0.5021 0.8966 31 1 -0.3633 0.5254 -0.8832 32 1 -0.3633 -1.0276 -0.0135 33 1 2.1525 -0.1231 -2.0977 34 1 1.4489 -1.6424 -1.4487 35 1 3.1059 -2.5433 0.9383 36 1 4.1096 -1.1208 1.3380 37 1 2.1449 -2.5906 3.2304 38 1 3.1491 -1.1892 3.6728 39 1 2.6342 -2.9094 5.5922 40 1 2.5144 -1.4473 6.6188 41 1 0.8489 -3.8446 6.6864 42 1 0.7674 -2.4140 7.7519 43 1 -0.7900 -1.3854 4.2156 44 1 0.0201 -2.9815 4.1096 45 1 4.1308 0.8087 -0.4059 46 1 4.5626 0.1363 -1.9965 47 1 5.7754 -0.6227 0.7015 48 1 6.5850 0.2419 -0.6307 49 1 8.0736 -5.0111 -0.9112 50 1 5.6432 -3.7576 -1.4899 51 1 5.1622 -3.2259 0.1423 52 1 3.1763 -3.2663 -1.2720 53 1 3.9953 -2.2854 -2.5112 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086911922.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:11 Heat of formation + Delta-G solvation = -83.323147 kcal Electronic energy + Delta-G solvation = -31134.924811 eV Core-core repulsion = 27198.805441 eV Total energy + Delta-G solvation = -3936.119370 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.81486 -40.55576 -39.48831 -37.45868 -34.76645 -34.62824 -32.97726 -32.53034 -31.54879 -30.70524 -28.78423 -27.99367 -26.65351 -25.94157 -24.14807 -23.72105 -23.07502 -22.25893 -21.26871 -20.25272 -19.55786 -18.39737 -18.02686 -17.54409 -16.95146 -16.82083 -16.69954 -16.35796 -15.81452 -15.74857 -15.46238 -15.30270 -14.86865 -14.75163 -14.57591 -14.46049 -14.12949 -13.95131 -13.65978 -13.28791 -13.21890 -13.14103 -12.99637 -12.91587 -12.74216 -12.60014 -12.52630 -12.43880 -12.34735 -12.22348 -11.99709 -11.95259 -11.83520 -11.80645 -11.56992 -11.43940 -11.04187 -10.91365 -10.65551 -10.49809 -10.44927 -9.60511 -8.60272 -7.83526 -5.27110 1.48952 1.50918 1.57032 1.64045 1.99219 2.54143 3.00069 3.29647 3.34416 3.54461 3.61501 3.73411 3.79074 3.83152 3.89648 3.97460 4.14433 4.19877 4.24425 4.29915 4.34243 4.40389 4.47759 4.53625 4.59054 4.61644 4.71541 4.72364 4.77487 4.81227 4.81957 4.84466 4.88300 4.89695 4.95653 4.98241 5.09031 5.10824 5.17829 5.23982 5.24737 5.27790 5.34159 5.39005 5.44067 5.56889 5.59592 5.70151 5.84491 5.90617 6.43962 6.56962 7.19173 7.20729 7.92934 8.42458 9.21685 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014224 B = 0.003016 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.064506 B = 9281.903030 C =10658.803979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.132 3.868 3 H 0.074 0.926 4 C -0.111 4.111 5 C -0.053 4.053 6 C 0.116 3.884 7 N -0.612 5.612 8 C 0.525 3.475 9 O -0.568 6.568 10 C -0.125 4.125 11 C -0.099 4.099 12 H 0.079 0.921 13 C -0.148 4.148 14 C 0.040 3.960 15 O -0.406 6.406 16 C 0.055 3.945 17 C -0.106 4.106 18 C 0.141 3.859 19 N -0.608 5.608 20 C -0.261 4.261 21 H 0.062 0.938 22 C -0.046 4.046 23 N -0.930 5.930 24 Si 0.959 3.041 25 H -0.295 1.295 26 H -0.280 1.280 27 H -0.279 1.279 28 C 0.178 3.822 29 C -0.113 4.113 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.062 0.938 45 H 0.072 0.928 46 H 0.061 0.939 47 H 0.019 0.981 48 H 0.048 0.952 49 H 0.249 0.751 50 H 0.049 0.951 51 H 0.004 0.996 52 H 0.069 0.931 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.235 4.946 7.199 15.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.030 3.970 3 H 0.092 0.908 4 C -0.149 4.149 5 C -0.053 4.053 6 C -0.007 4.007 7 N -0.346 5.346 8 C 0.315 3.685 9 O -0.448 6.448 10 C -0.165 4.165 11 C -0.118 4.118 12 H 0.098 0.902 13 C -0.186 4.186 14 C -0.037 4.037 15 O -0.326 6.326 16 C -0.021 4.021 17 C -0.145 4.145 18 C 0.016 3.984 19 N -0.331 5.331 20 C -0.392 4.392 21 H 0.080 0.920 22 C -0.242 4.242 23 N -0.576 5.576 24 Si 0.788 3.212 25 H -0.222 1.222 26 H -0.207 1.207 27 H -0.205 1.205 28 C 0.052 3.948 29 C -0.152 4.152 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.114 0.886 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.086 0.914 42 H 0.112 0.888 43 H 0.103 0.897 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.080 0.920 47 H 0.037 0.963 48 H 0.067 0.933 49 H 0.058 0.942 50 H 0.068 0.932 51 H 0.022 0.978 52 H 0.087 0.913 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.915 5.152 7.511 16.631 hybrid contribution 1.330 -0.517 -0.716 1.596 sum -12.585 4.635 6.796 15.035 Atomic orbital electron populations 1.22062 0.93805 1.02077 1.03258 1.21998 0.94984 0.95556 0.84501 0.90781 1.22901 0.94449 1.00586 0.96948 1.20836 0.95168 0.96087 0.93245 1.22109 0.86450 0.96282 0.95813 1.48781 1.28161 1.48208 1.09417 1.20660 0.83639 0.81597 0.82585 1.90612 1.26595 1.45366 1.82222 1.21687 1.01115 1.01683 0.92000 1.22374 0.94603 1.00935 0.93884 0.90239 1.23024 0.98315 1.00657 0.96605 1.23343 0.83454 0.99312 0.97569 1.88845 1.32804 1.87928 1.22999 1.23624 0.96484 0.98765 0.83238 1.21770 0.94796 0.96673 1.01304 1.21083 0.94995 0.87675 0.94637 1.44252 1.16321 1.08578 1.63969 1.19426 0.98070 0.94935 1.26729 0.92026 1.25660 1.00434 0.97910 1.00161 1.70152 1.45677 1.04237 1.37524 0.85469 0.79600 0.76423 0.79707 1.22152 1.20659 1.20453 1.20522 0.87248 0.90316 0.96712 1.21830 0.97685 0.96101 0.99586 0.91553 0.90462 0.93365 0.88643 0.90141 0.91165 0.91370 0.87494 0.87299 0.89044 0.89044 0.91439 0.88783 0.89699 0.92005 0.90963 0.92043 0.96328 0.93347 0.94212 0.93209 0.97766 0.91272 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.71 71.98 0.63 -2.77 16 2 C 0.13 2.98 3.44 45.50 0.16 3.14 16 3 H 0.07 1.68 7.76 -2.39 -0.02 1.66 16 4 C -0.11 -2.39 5.41 31.80 0.17 -2.22 16 5 C -0.05 -1.41 0.53 -51.91 -0.03 -1.44 16 6 C 0.12 2.99 4.68 86.48 0.41 3.39 16 7 N -0.61 -14.95 3.25 -788.63 -2.56 -17.52 16 8 C 0.52 13.22 7.45 87.66 0.65 13.88 16 9 O -0.57 -17.02 12.40 -3.02 -0.04 -17.05 16 10 C -0.13 -2.47 4.30 29.85 0.13 -2.34 16 11 C -0.10 -1.97 2.68 -9.50 -0.03 -1.99 16 12 H 0.08 1.81 7.97 -2.39 -0.02 1.79 16 13 C -0.15 -2.28 6.60 31.58 0.21 -2.07 16 14 C 0.04 0.68 7.70 72.35 0.56 1.23 16 15 O -0.41 -9.91 11.52 -148.98 -1.72 -11.63 16 16 C 0.06 1.26 6.56 72.67 0.48 1.73 16 17 C -0.11 -3.08 4.78 30.46 0.15 -2.93 16 18 C 0.14 5.28 6.22 86.40 0.54 5.82 16 19 N -0.61 -28.12 2.99 -699.54 -2.09 -30.21 16 20 C -0.26 -13.70 9.57 84.03 0.80 -12.89 16 21 H 0.06 3.19 7.89 -2.91 -0.02 3.16 16 22 C -0.05 -2.46 4.91 84.86 0.42 -2.04 16 23 N -0.93 -52.45 11.20 21.65 0.24 -52.21 16 24 Si 0.96 43.42 29.59 68.60 2.03 45.45 16 25 H -0.30 -13.48 7.11 99.48 0.71 -12.78 16 26 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 27 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 28 C 0.18 7.70 5.02 86.25 0.43 8.13 16 29 C -0.11 -3.64 4.69 30.30 0.14 -3.50 16 30 H 0.07 1.76 5.89 -2.39 -0.01 1.74 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.10 1.82 8.01 -2.39 -0.02 1.80 16 34 H 0.08 1.68 7.93 -2.39 -0.02 1.66 16 35 H 0.07 1.82 7.59 -2.39 -0.02 1.80 16 36 H 0.07 1.89 6.07 -2.39 -0.01 1.88 16 37 H 0.11 1.88 8.05 -2.39 -0.02 1.86 16 38 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.09 1.21 7.86 -2.39 -0.02 1.19 16 40 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.08 2.21 7.30 -2.38 -0.02 2.19 16 44 H 0.06 1.30 7.98 -2.39 -0.02 1.28 16 45 H 0.07 1.81 7.49 -2.39 -0.02 1.80 16 46 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.02 0.70 6.53 -2.39 -0.02 0.69 16 48 H 0.05 1.83 7.93 -2.39 -0.02 1.81 16 49 H 0.25 13.73 8.31 -92.70 -0.77 12.96 16 50 H 0.05 2.54 6.02 -2.39 -0.01 2.52 16 51 H 0.00 0.19 7.47 -2.38 -0.02 0.18 16 52 H 0.07 1.99 8.10 -2.39 -0.02 1.97 16 53 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -63.22 392.79 2.55 -60.67 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.87 Total: 19.38 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 5.81 Total: 3.11 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -4.41 Total: -99.94 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -1.75 Total: -28.68 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -63.22 2.55 -60.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086911922.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.648 kcal (2) G-P(sol) polarization free energy of solvation -63.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds