Wall clock time and date at job start Tue Mar 31 2020 19:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.99340 * 2 1 4 4 C 1.54474 * 110.00357 * 238.97873 * 2 1 3 5 5 C 1.54367 * 102.96239 * 219.39784 * 4 2 1 6 6 C 1.54140 * 102.47553 * 34.42129 * 5 4 2 7 7 N 1.47090 * 109.87305 * 121.07872 * 2 1 3 8 8 C 1.34767 * 125.63191 * 298.41842 * 7 2 1 9 9 O 1.21287 * 120.00155 * 359.72225 * 8 7 2 10 10 C 1.50702 * 120.00412 * 179.72105 * 8 7 2 11 11 H 1.08996 * 109.47828 * 54.97095 * 10 8 7 12 12 C 1.53094 * 109.48796 * 294.95014 * 10 8 7 13 13 C 1.53171 * 109.16420 * 182.39972 * 12 10 8 14 14 C 1.53182 * 109.03901 * 56.98089 * 13 12 10 15 15 C 1.53096 * 109.15815 * 303.01965 * 14 13 12 16 16 O 1.42898 * 109.41385 * 57.61070 * 15 14 13 17 17 C 1.52109 * 110.56544 * 152.37406 * 5 4 2 18 18 C 1.53341 * 109.43986 * 182.79775 * 17 5 4 19 19 N 1.46925 * 108.69270 * 306.70084 * 18 17 5 20 20 C 1.36933 * 120.55546 * 234.36830 * 19 18 17 21 21 H 1.07997 * 120.00230 * 27.95568 * 20 19 18 22 22 C 1.38812 * 119.99978 * 207.96023 * 20 19 18 23 23 N 1.31619 * 120.00291 * 17.46143 * 22 20 19 24 24 Si 1.86803 * 120.00128 * 197.46726 * 22 20 19 25 25 H 1.48497 * 109.47166 * 59.99741 * 24 22 20 26 26 H 1.48499 * 109.47399 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47026 * 299.99899 * 24 22 20 28 28 C 1.46936 * 118.89293 * 54.34910 * 19 18 17 29 29 C 1.52104 * 110.55480 * 276.47008 * 5 4 2 30 30 H 1.09003 * 109.47220 * 300.37820 * 1 2 3 31 31 H 1.09007 * 109.46969 * 60.37445 * 1 2 3 32 32 H 1.08998 * 109.47704 * 180.37480 * 1 2 3 33 33 H 1.09005 * 110.88143 * 100.93529 * 4 2 1 34 34 H 1.09001 * 110.65061 * 337.75765 * 4 2 1 35 35 H 1.09003 * 110.37656 * 205.08310 * 6 5 4 36 36 H 1.09003 * 110.37958 * 82.73585 * 6 5 4 37 37 H 1.08997 * 109.52462 * 62.49173 * 12 10 8 38 38 H 1.09002 * 109.52476 * 302.30532 * 12 10 8 39 39 H 1.08997 * 109.54771 * 297.11499 * 13 12 10 40 40 H 1.09004 * 109.54669 * 176.84219 * 13 12 10 41 41 H 1.09002 * 109.52066 * 62.92117 * 14 13 12 42 42 H 1.08998 * 109.52839 * 183.05276 * 14 13 12 43 43 H 1.09009 * 109.47889 * 177.58569 * 15 14 13 44 44 H 1.08991 * 109.48128 * 297.62195 * 15 14 13 45 45 H 1.09002 * 109.47515 * 302.79201 * 17 5 4 46 46 H 1.08998 * 109.47456 * 62.80649 * 17 5 4 47 47 H 1.09005 * 109.59626 * 186.94170 * 18 17 5 48 48 H 1.09002 * 109.60471 * 66.47309 * 18 17 5 49 49 H 0.97000 * 120.00679 * 179.97438 * 23 22 20 50 50 H 1.08997 * 109.60708 * 185.89034 * 28 19 18 51 51 H 1.09005 * 109.60420 * 65.40741 * 28 19 18 52 52 H 1.09001 * 109.47708 * 297.18282 * 29 5 4 53 53 H 1.09005 * 109.47140 * 57.19509 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0584 -0.7481 -1.2439 5 6 3.2692 -1.5291 -0.6899 6 6 2.8114 -1.8837 0.7385 7 7 2.0300 -0.7141 1.1847 8 6 1.8067 -0.3616 2.4662 9 8 1.1463 0.6241 2.7178 10 6 2.3774 -1.1923 3.5867 11 1 3.4550 -1.2888 3.4550 12 6 1.7347 -2.5817 3.5709 13 6 2.2753 -3.3991 4.7481 14 6 1.9956 -2.6440 6.0511 15 6 2.6283 -1.2522 5.9710 16 8 2.1049 -0.5571 4.8375 17 6 3.5096 -2.7907 -1.5049 18 6 4.6717 -3.5809 -0.8914 19 7 5.8311 -2.6880 -0.7604 20 6 7.0391 -3.0310 -1.3063 21 1 7.0768 -3.6712 -2.1753 22 6 8.2154 -2.5558 -0.7429 23 7 8.2112 -2.0761 0.4828 24 14 9.8044 -2.5972 -1.7241 25 1 9.6451 -1.7872 -2.9585 26 1 10.9077 -2.0363 -0.9035 27 1 10.1235 -4.0004 -2.0906 28 6 5.6725 -1.4206 -0.0341 29 6 4.5048 -0.6427 -0.6527 30 1 -0.3634 0.5197 0.8866 31 1 -0.3633 0.5080 -0.8934 32 1 -0.3634 -1.0276 0.0067 33 1 2.3729 -0.0452 -2.0155 34 1 1.3028 -1.4315 -1.6313 35 1 3.6743 -2.0337 1.3874 36 1 2.1853 -2.7760 0.7259 37 1 1.9783 -3.0852 2.6354 38 1 0.6529 -2.4837 3.6619 39 1 3.3499 -3.5395 4.6316 40 1 1.7803 -4.3699 4.7759 41 1 0.9191 -2.5472 6.1921 42 1 2.4249 -3.1925 6.8895 43 1 2.3959 -0.6945 6.8784 44 1 3.7092 -1.3495 5.8707 45 1 2.6090 -3.4047 -1.4984 46 1 3.7567 -2.5188 -2.5311 47 1 4.9269 -4.4188 -1.5403 48 1 4.3828 -3.9520 0.0920 49 1 9.0332 -1.7444 0.8767 50 1 6.5875 -0.8342 -0.1177 51 1 5.4608 -1.6245 1.0156 52 1 4.7660 -0.3405 -1.6668 53 1 4.2987 0.2428 -0.0512 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086916639.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:28 Heat of formation + Delta-G solvation = -84.671052 kcal Electronic energy + Delta-G solvation = -32072.316434 eV Core-core repulsion = 28136.138615 eV Total energy + Delta-G solvation = -3936.177819 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.98875 -40.53443 -39.19965 -37.48644 -34.91871 -34.63365 -33.57713 -32.50450 -31.70759 -31.53391 -28.75142 -27.22920 -26.58127 -25.90655 -24.86206 -23.95934 -23.16434 -22.16191 -21.33889 -20.32497 -19.66699 -18.50409 -18.34871 -17.46387 -16.90224 -16.83282 -16.63428 -16.36642 -15.73864 -15.53719 -15.31461 -15.29463 -15.04157 -14.82029 -14.72953 -14.41221 -14.28429 -13.90787 -13.71951 -13.68189 -13.45041 -13.17729 -13.05326 -12.95104 -12.87013 -12.56784 -12.53770 -12.34882 -12.28120 -12.19378 -12.00796 -11.95430 -11.84212 -11.78500 -11.50999 -11.36440 -11.06131 -10.92458 -10.72403 -10.50407 -10.46266 -9.69434 -8.61056 -7.83993 -5.27595 1.47044 1.47671 1.50367 1.56015 1.66293 2.53672 2.86545 3.29659 3.34003 3.51171 3.69757 3.71252 3.75637 3.82329 3.87528 3.97929 3.99852 4.13265 4.15399 4.24462 4.30477 4.43241 4.47196 4.54465 4.56669 4.58901 4.69288 4.73096 4.77103 4.77292 4.83107 4.84666 4.94796 4.97539 4.98301 5.03250 5.07605 5.09138 5.13691 5.24094 5.30513 5.32244 5.34492 5.39550 5.43387 5.45695 5.58565 5.69162 5.80807 6.06454 6.42939 6.43265 7.06831 7.19388 7.92769 8.42477 9.21349 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011404 B = 0.004029 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.584598 B = 6948.267552 C = 8363.191849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.131 3.869 3 H 0.056 0.944 4 C -0.106 4.106 5 C -0.054 4.054 6 C 0.109 3.891 7 N -0.603 5.603 8 C 0.532 3.468 9 O -0.568 6.568 10 C 0.078 3.922 11 H 0.077 0.923 12 C -0.139 4.139 13 C -0.121 4.121 14 C -0.151 4.151 15 C 0.049 3.951 16 O -0.386 6.386 17 C -0.104 4.104 18 C 0.138 3.862 19 N -0.607 5.607 20 C -0.258 4.258 21 H 0.067 0.933 22 C -0.048 4.048 23 N -0.934 5.934 24 Si 0.958 3.042 25 H -0.281 1.281 26 H -0.299 1.299 27 H -0.275 1.275 28 C 0.182 3.818 29 C -0.113 4.113 30 H 0.040 0.960 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.097 0.903 43 H 0.111 0.889 44 H 0.053 0.947 45 H 0.093 0.907 46 H 0.063 0.937 47 H 0.054 0.946 48 H 0.022 0.978 49 H 0.247 0.753 50 H 0.045 0.955 51 H -0.002 1.002 52 H 0.055 0.945 53 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.048 -3.069 3.108 16.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.029 3.971 3 H 0.075 0.925 4 C -0.144 4.144 5 C -0.055 4.055 6 C -0.013 4.013 7 N -0.337 5.337 8 C 0.321 3.679 9 O -0.447 6.447 10 C 0.017 3.983 11 H 0.094 0.906 12 C -0.177 4.177 13 C -0.159 4.159 14 C -0.189 4.189 15 C -0.027 4.027 16 O -0.305 6.305 17 C -0.144 4.144 18 C 0.013 3.987 19 N -0.330 5.330 20 C -0.388 4.388 21 H 0.085 0.915 22 C -0.244 4.244 23 N -0.581 5.581 24 Si 0.787 3.213 25 H -0.207 1.207 26 H -0.225 1.225 27 H -0.200 1.200 28 C 0.056 3.944 29 C -0.152 4.152 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.122 0.878 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.110 0.890 41 H 0.090 0.910 42 H 0.116 0.884 43 H 0.129 0.871 44 H 0.072 0.928 45 H 0.112 0.888 46 H 0.082 0.918 47 H 0.072 0.928 48 H 0.040 0.960 49 H 0.056 0.944 50 H 0.063 0.937 51 H 0.016 0.984 52 H 0.073 0.927 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.380 -2.311 3.428 16.894 hybrid contribution 1.710 0.237 -0.023 1.727 sum -14.670 -2.073 3.405 15.202 Atomic orbital electron populations 1.22044 0.93642 1.02707 1.02484 1.21720 0.95171 0.95772 0.84466 0.92547 1.22761 0.96790 0.99436 0.95366 1.20905 0.94238 0.96387 0.93942 1.22592 0.94627 0.88108 0.95959 1.48567 1.51988 1.28875 1.04290 1.20148 0.80047 0.84756 0.82966 1.90646 1.41503 1.28743 1.83805 1.21843 0.99335 0.92958 0.84141 0.90572 1.22140 1.01052 0.92913 1.01589 1.21627 1.01688 0.99283 0.93260 1.22184 1.02122 0.95681 0.98896 1.22929 0.97632 0.93990 0.88169 1.87978 1.78872 1.49885 1.13763 1.21743 0.98883 0.94969 0.98764 1.21153 0.87413 0.92507 0.97630 1.44251 1.06883 1.17637 1.64231 1.19473 0.84240 1.28397 1.06694 0.91523 1.25681 1.00448 1.02309 0.95948 1.70160 1.27075 1.47262 1.13561 0.85476 0.79717 0.78038 0.78049 1.20705 1.22502 1.20031 1.20537 0.95459 0.86743 0.91661 1.21795 0.95622 0.97259 1.00496 0.94082 0.89563 0.91440 0.89249 0.87790 0.91679 0.88768 0.89119 0.90903 0.91594 0.88962 0.90957 0.88445 0.87054 0.92850 0.88830 0.91841 0.92758 0.96021 0.94382 0.93678 0.98361 0.92658 0.93589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 9.11 71.98 0.66 -2.65 16 2 C 0.13 3.30 3.11 45.38 0.14 3.44 16 3 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 4 C -0.11 -2.22 5.43 31.56 0.17 -2.05 16 5 C -0.05 -1.45 0.54 -51.92 -0.03 -1.48 16 6 C 0.11 2.87 3.33 86.56 0.29 3.16 16 7 N -0.60 -17.14 3.06 -788.75 -2.41 -19.55 16 8 C 0.53 17.71 7.03 87.66 0.62 18.32 16 9 O -0.57 -22.97 15.55 15.93 0.25 -22.73 16 10 C 0.08 2.28 2.41 29.88 0.07 2.35 16 11 H 0.08 2.32 7.63 -2.39 -0.02 2.30 16 12 C -0.14 -3.08 5.26 30.68 0.16 -2.92 16 13 C -0.12 -2.21 6.03 30.71 0.19 -2.02 16 14 C -0.15 -2.60 6.14 30.69 0.19 -2.41 16 15 C 0.05 1.07 6.84 72.01 0.49 1.56 16 16 O -0.39 -11.99 9.94 -130.00 -1.29 -13.28 16 17 C -0.10 -2.76 4.83 30.41 0.15 -2.61 16 18 C 0.14 4.91 6.25 86.41 0.54 5.45 16 19 N -0.61 -28.09 2.98 -698.49 -2.08 -30.18 16 20 C -0.26 -13.51 9.57 84.03 0.80 -12.70 16 21 H 0.07 3.39 7.89 -2.91 -0.02 3.37 16 22 C -0.05 -2.64 4.90 84.86 0.42 -2.22 16 23 N -0.93 -54.14 11.20 21.65 0.24 -53.90 16 24 Si 0.96 43.98 29.59 68.60 2.03 46.01 16 25 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 26 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 27 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 28 C 0.18 8.30 5.02 86.41 0.43 8.74 16 29 C -0.11 -3.98 4.83 30.41 0.15 -3.83 16 30 H 0.04 1.13 6.89 -2.39 -0.02 1.12 16 31 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.09 1.78 8.01 -2.38 -0.02 1.76 16 34 H 0.10 1.67 7.69 -2.39 -0.02 1.65 16 35 H 0.06 2.04 5.40 -2.39 -0.01 2.03 16 36 H 0.09 2.01 6.99 -2.39 -0.02 1.99 16 37 H 0.09 1.84 5.62 -2.39 -0.01 1.83 16 38 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 44 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.09 1.81 8.09 -2.39 -0.02 1.79 16 46 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.05 1.92 7.93 -2.38 -0.02 1.90 16 48 H 0.02 0.76 7.63 -2.39 -0.02 0.74 16 49 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 50 H 0.04 2.44 6.01 -2.39 -0.01 2.42 16 51 H 0.00 -0.07 6.57 -2.38 -0.02 -0.09 16 52 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 53 H 0.05 1.63 7.85 -2.38 -0.02 1.62 16 Total: -1.00 -69.49 390.49 3.04 -66.45 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.87 Total: 19.04 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 5.43 Total: 8.13 kcal Atomic # 7 Polarization: -99.37 SS G_CDS: -4.25 Total: -103.62 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -1.04 Total: -36.01 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -69.49 3.04 -66.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086916639.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.220 kcal (2) G-P(sol) polarization free energy of solvation -69.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds