Wall clock time and date at job start Tue Mar 31 2020 19:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.39913 * 2 1 4 4 C 1.55240 * 110.33081 * 122.41063 * 2 1 3 5 5 C 1.54516 * 101.44185 * 155.44480 * 4 2 1 6 6 C 1.53697 * 103.64397 * 325.01445 * 5 4 2 7 7 N 1.47165 * 107.11396 * 21.54289 * 6 5 4 8 8 C 1.34780 * 125.66708 * 181.46635 * 7 6 5 9 9 O 1.21273 * 120.00863 * 184.93295 * 8 7 6 10 10 C 1.50705 * 119.99182 * 4.93462 * 8 7 6 11 11 H 1.08997 * 109.48103 * 44.91440 * 10 8 7 12 12 C 1.53088 * 109.48521 * 284.88385 * 10 8 7 13 13 C 1.53177 * 109.21769 * 182.38154 * 12 10 8 14 14 C 1.53312 * 108.96679 * 56.95477 * 13 12 10 15 15 C 1.53098 * 109.19205 * 303.05586 * 14 13 12 16 16 O 1.42908 * 109.47409 * 164.94279 * 10 8 7 17 17 C 1.52268 * 110.20309 * 83.42078 * 5 4 2 18 18 C 1.53314 * 109.42185 * 182.19742 * 17 5 4 19 19 N 1.46921 * 108.70787 * 306.49794 * 18 17 5 20 20 C 1.36938 * 120.56448 * 234.20496 * 19 18 17 21 21 H 1.08005 * 119.99701 * 32.79838 * 20 19 18 22 22 C 1.38807 * 120.00423 * 212.79479 * 20 19 18 23 23 N 1.31623 * 119.99862 * 15.33154 * 22 20 19 24 24 Si 1.86803 * 120.00251 * 195.33030 * 22 20 19 25 25 H 1.48506 * 109.47025 * 90.00148 * 24 22 20 26 26 H 1.48503 * 109.47371 * 210.00164 * 24 22 20 27 27 H 1.48502 * 109.47097 * 330.00113 * 24 22 20 28 28 C 1.46935 * 118.87644 * 54.23300 * 19 18 17 29 29 C 1.52270 * 110.21134 * 206.61333 * 5 4 2 30 30 H 1.08997 * 109.47032 * 180.80069 * 1 2 3 31 31 H 1.08997 * 109.47290 * 300.80456 * 1 2 3 32 32 H 1.09007 * 109.46996 * 60.80746 * 1 2 3 33 33 H 1.09007 * 111.20002 * 37.35095 * 4 2 1 34 34 H 1.09003 * 110.94629 * 273.42798 * 4 2 1 35 35 H 1.08998 * 109.91131 * 262.17071 * 6 5 4 36 36 H 1.08999 * 110.06100 * 141.00054 * 6 5 4 37 37 H 1.09007 * 109.52206 * 302.31787 * 12 10 8 38 38 H 1.09004 * 109.52002 * 62.43858 * 12 10 8 39 39 H 1.08996 * 109.54145 * 176.87824 * 13 12 10 40 40 H 1.09002 * 109.54157 * 297.14711 * 13 12 10 41 41 H 1.08996 * 109.50868 * 183.14588 * 14 13 12 42 42 H 1.08999 * 109.56070 * 63.00127 * 14 13 12 43 43 H 1.08997 * 109.48040 * 297.62975 * 15 14 13 44 44 H 1.08996 * 109.48774 * 177.59325 * 15 14 13 45 45 H 1.09000 * 109.48392 * 302.18767 * 17 5 4 46 46 H 1.09009 * 109.47846 * 62.21829 * 17 5 4 47 47 H 1.09001 * 109.60121 * 186.72785 * 18 17 5 48 48 H 1.09007 * 109.59046 * 66.26317 * 18 17 5 49 49 H 0.97001 * 120.00078 * 179.97438 * 23 22 20 50 50 H 1.09001 * 109.60388 * 185.99643 * 28 19 18 51 51 H 1.08999 * 109.73210 * 65.59555 * 28 19 18 52 52 H 1.09000 * 109.47690 * 297.77426 * 29 5 4 53 53 H 1.09003 * 109.48343 * 57.79685 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9099 1.0216 0.0000 4 6 2.0693 -0.7802 1.2289 5 6 3.4675 -1.2091 0.7302 6 6 3.2522 -1.4748 -0.7682 7 7 2.0430 -0.7381 -1.1693 8 6 1.4981 -0.7338 -2.4020 9 8 0.5491 -0.0183 -2.6432 10 6 2.0682 -1.6184 -3.4808 11 1 2.2527 -2.6132 -3.0754 12 6 3.3836 -1.0218 -3.9882 13 6 3.9271 -1.8932 -5.1247 14 6 2.8675 -1.9906 -6.2284 15 6 1.5720 -2.5498 -5.6345 16 8 1.1391 -1.7093 -4.5628 17 6 4.4685 -0.0803 0.9366 18 6 5.8353 -0.5041 0.3863 19 7 6.2098 -1.7888 0.9929 20 6 7.4090 -1.9307 1.6386 21 1 7.8383 -1.0942 2.1702 22 6 8.0728 -3.1494 1.6100 23 7 7.7243 -4.0682 0.7344 24 14 9.4609 -3.4854 2.8141 25 1 8.9077 -4.0977 4.0488 26 1 10.4386 -4.4162 2.1952 27 1 10.1398 -2.2096 3.1555 28 6 5.2760 -2.9190 0.8944 29 6 3.9130 -2.4795 1.4417 30 1 -0.3633 -1.0275 0.0144 31 1 -0.3634 0.5263 0.8826 32 1 -0.3633 0.5013 -0.8972 33 1 1.4487 -1.6493 1.4475 34 1 2.1477 -0.1295 2.0999 35 1 3.1105 -2.5419 -0.9394 36 1 4.1102 -1.1184 -1.3382 37 1 3.2070 -0.0112 -4.3566 38 1 4.1077 -0.9914 -3.1741 39 1 4.8346 -1.4431 -5.5271 40 1 4.1504 -2.8902 -4.7449 41 1 3.2230 -2.6541 -7.0167 42 1 2.6803 -1.0000 -6.6430 43 1 1.7501 -3.5569 -5.2574 44 1 0.8023 -2.5811 -6.4055 45 1 4.1252 0.8106 0.4108 46 1 4.5568 0.1371 2.0011 47 1 6.5807 0.2503 0.6381 48 1 5.7750 -0.6147 -0.6965 49 1 8.1884 -4.9197 0.7141 50 1 5.6527 -3.7568 1.4812 51 1 5.1716 -3.2203 -0.1479 52 1 3.9957 -2.2870 2.5114 53 1 3.1806 -3.2683 1.2698 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086916640.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:33 Heat of formation + Delta-G solvation = -83.583323 kcal Electronic energy + Delta-G solvation = -31869.967283 eV Core-core repulsion = 27933.836631 eV Total energy + Delta-G solvation = -3936.130652 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.97473 -40.54368 -39.22971 -37.41916 -34.87460 -34.63078 -33.59190 -32.59578 -31.67376 -31.55231 -28.75013 -27.20943 -26.48009 -25.88305 -24.89539 -24.03372 -23.11672 -22.20168 -21.29599 -20.39687 -19.71960 -18.43886 -18.16812 -17.35701 -17.13057 -16.85131 -16.80159 -15.96747 -15.82507 -15.75131 -15.39688 -15.24134 -15.00335 -14.85589 -14.69804 -14.46564 -14.27860 -13.96148 -13.74247 -13.66034 -13.29008 -13.14746 -13.05273 -12.95163 -12.79902 -12.57027 -12.56210 -12.44632 -12.37566 -12.16844 -12.03820 -11.96292 -11.86017 -11.82459 -11.51411 -11.34861 -11.03901 -10.90298 -10.62254 -10.49523 -10.44554 -9.68687 -8.54397 -7.83722 -5.32869 1.44769 1.48307 1.50457 1.57946 1.67102 2.53555 2.87191 3.30096 3.33580 3.50900 3.69622 3.71004 3.78223 3.78481 3.82563 3.96725 3.99696 4.10460 4.14387 4.23007 4.30865 4.37650 4.47622 4.53683 4.56218 4.60505 4.68578 4.70996 4.75259 4.79198 4.81496 4.82117 4.94291 4.96574 4.98764 5.03357 5.08998 5.09342 5.15714 5.20627 5.26464 5.30206 5.32634 5.37499 5.43836 5.51748 5.56709 5.71030 5.81617 6.06913 6.43664 6.46171 7.07936 7.21582 7.91594 8.44355 9.21253 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012532 B = 0.003739 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.734252 B = 7486.828687 C = 9103.019427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.133 3.867 3 H 0.079 0.921 4 C -0.109 4.109 5 C -0.051 4.051 6 C 0.111 3.889 7 N -0.607 5.607 8 C 0.534 3.466 9 O -0.559 6.559 10 C 0.081 3.919 11 H 0.088 0.912 12 C -0.142 4.142 13 C -0.121 4.121 14 C -0.152 4.152 15 C 0.052 3.948 16 O -0.385 6.385 17 C -0.107 4.107 18 C 0.141 3.859 19 N -0.605 5.605 20 C -0.264 4.264 21 H 0.060 0.940 22 C -0.040 4.040 23 N -0.930 5.930 24 Si 0.958 3.042 25 H -0.286 1.286 26 H -0.296 1.296 27 H -0.271 1.271 28 C 0.181 3.819 29 C -0.113 4.113 30 H 0.049 0.951 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.113 0.887 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.048 0.952 48 H 0.016 0.984 49 H 0.249 0.751 50 H 0.042 0.958 51 H 0.004 0.996 52 H 0.059 0.941 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.059 4.106 -6.988 14.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.031 3.969 3 H 0.096 0.904 4 C -0.147 4.147 5 C -0.052 4.052 6 C -0.011 4.011 7 N -0.342 5.342 8 C 0.323 3.677 9 O -0.438 6.438 10 C 0.020 3.980 11 H 0.105 0.895 12 C -0.180 4.180 13 C -0.158 4.158 14 C -0.190 4.190 15 C -0.024 4.024 16 O -0.304 6.304 17 C -0.146 4.146 18 C 0.016 3.984 19 N -0.329 5.329 20 C -0.394 4.394 21 H 0.078 0.922 22 C -0.236 4.236 23 N -0.575 5.575 24 Si 0.787 3.213 25 H -0.213 1.213 26 H -0.223 1.223 27 H -0.196 1.196 28 C 0.055 3.945 29 C -0.152 4.152 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.119 0.881 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.116 0.884 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.131 0.869 45 H 0.090 0.910 46 H 0.084 0.916 47 H 0.067 0.933 48 H 0.034 0.966 49 H 0.058 0.942 50 H 0.061 0.939 51 H 0.023 0.977 52 H 0.078 0.922 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.692 4.442 -7.233 15.268 hybrid contribution 1.365 -0.667 0.424 1.578 sum -11.326 3.774 -6.809 13.744 Atomic orbital electron populations 1.22061 0.93866 1.02199 1.03325 1.22123 0.95013 0.95730 0.84071 0.90356 1.22956 0.94296 1.00685 0.96732 1.20831 0.95336 0.96307 0.92695 1.22258 0.86246 0.96239 0.96353 1.48633 1.28270 1.48520 1.08744 1.20109 0.82666 0.82821 0.82151 1.90613 1.29322 1.42858 1.80981 1.21842 0.90108 0.98654 0.87397 0.89454 1.22098 0.95178 1.00409 1.00333 1.21632 0.98968 1.00181 0.95036 1.22212 0.95218 1.02844 0.98698 1.22927 0.97688 0.93023 0.88797 1.87983 1.43038 1.70022 1.29309 1.21784 0.94728 0.96569 1.01545 1.21085 0.94953 0.87856 0.94492 1.44191 1.16595 1.08220 1.63863 1.19420 0.97781 0.97563 1.24664 0.92228 1.25775 1.00021 0.98578 0.99238 1.70142 1.44473 1.07128 1.35751 0.85410 0.79299 0.77668 0.78903 1.21275 1.22315 1.19563 1.20548 0.87413 0.90031 0.96490 1.21916 0.97580 0.95960 0.99770 0.93229 0.89658 0.92198 0.89847 0.88064 0.91327 0.91123 0.91510 0.90287 0.90006 0.91023 0.88366 0.91411 0.91973 0.86897 0.91005 0.91640 0.93300 0.96639 0.94177 0.93915 0.97747 0.92201 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 8.77 71.98 0.63 -3.07 16 2 C 0.13 3.19 3.43 45.57 0.16 3.34 16 3 H 0.08 1.85 7.74 -2.39 -0.02 1.84 16 4 C -0.11 -2.37 5.42 31.88 0.17 -2.20 16 5 C -0.05 -1.39 0.53 -51.91 -0.03 -1.42 16 6 C 0.11 3.06 4.28 86.49 0.37 3.43 16 7 N -0.61 -16.57 3.25 -788.23 -2.56 -19.13 16 8 C 0.53 16.47 6.88 87.66 0.60 17.08 16 9 O -0.56 -20.75 14.37 15.58 0.22 -20.53 16 10 C 0.08 2.16 2.45 29.88 0.07 2.24 16 11 H 0.09 2.16 7.71 -2.39 -0.02 2.14 16 12 C -0.14 -3.40 5.31 30.68 0.16 -3.24 16 13 C -0.12 -2.34 6.04 30.76 0.19 -2.16 16 14 C -0.15 -2.55 6.14 30.73 0.19 -2.36 16 15 C 0.05 0.98 6.84 72.01 0.49 1.47 16 16 O -0.38 -10.77 9.98 -130.39 -1.30 -12.07 16 17 C -0.11 -3.13 4.78 30.46 0.15 -2.99 16 18 C 0.14 5.34 6.22 86.40 0.54 5.88 16 19 N -0.61 -28.01 2.96 -698.59 -2.07 -30.08 16 20 C -0.26 -13.82 9.53 84.03 0.80 -13.02 16 21 H 0.06 3.09 7.88 -2.91 -0.02 3.07 16 22 C -0.04 -2.13 4.92 84.86 0.42 -1.71 16 23 N -0.93 -52.53 11.44 21.65 0.25 -52.29 16 24 Si 0.96 43.33 29.58 68.60 2.03 45.36 16 25 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 26 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 27 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 28 C 0.18 7.84 5.00 86.40 0.43 8.28 16 29 C -0.11 -3.64 4.70 30.46 0.14 -3.50 16 30 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.06 1.74 5.93 -2.38 -0.01 1.73 16 33 H 0.08 1.74 7.93 -2.38 -0.02 1.72 16 34 H 0.10 1.88 8.01 -2.39 -0.02 1.87 16 35 H 0.07 1.90 7.31 -2.39 -0.02 1.89 16 36 H 0.07 2.09 4.21 -2.39 -0.01 2.08 16 37 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.08 1.96 5.90 -2.38 -0.01 1.94 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.10 1.20 8.14 -2.39 -0.02 1.19 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.07 1.84 7.47 -2.39 -0.02 1.82 16 46 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 47 H 0.05 1.87 7.93 -2.39 -0.02 1.85 16 48 H 0.02 0.60 6.53 -2.38 -0.02 0.58 16 49 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 50 H 0.04 2.16 6.34 -2.39 -0.02 2.15 16 51 H 0.00 0.20 7.48 -2.39 -0.02 0.19 16 52 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 53 H 0.07 1.99 8.10 -2.39 -0.02 1.97 16 Total: -1.00 -65.63 388.48 2.94 -62.69 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.88 Total: 19.99 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 5.49 Total: 6.05 kcal Atomic # 7 Polarization: -97.11 SS G_CDS: -4.38 Total: -101.49 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -1.08 Total: -32.60 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -65.63 2.94 -62.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086916640.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.892 kcal (2) G-P(sol) polarization free energy of solvation -65.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds