Wall clock time and date at job start Tue Mar 31 2020 19:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.87014 * 2 1 4 4 C 1.54461 * 109.87998 * 238.99579 * 2 1 3 5 5 C 1.54389 * 102.87078 * 218.92331 * 4 2 1 6 6 C 1.54121 * 102.47858 * 34.64215 * 5 4 2 7 7 N 1.47083 * 110.00094 * 121.08650 * 2 1 3 8 8 C 1.34770 * 125.63015 * 298.48392 * 7 2 1 9 9 O 1.21279 * 119.99870 * 4.19956 * 8 7 2 10 10 C 1.50704 * 120.00071 * 184.19499 * 8 7 2 11 11 H 1.09000 * 109.47857 * 308.59283 * 10 8 7 12 12 C 1.53089 * 109.48164 * 68.61800 * 10 8 7 13 13 C 1.53168 * 109.16261 * 177.58925 * 12 10 8 14 14 C 1.53181 * 109.04254 * 303.02015 * 13 12 10 15 15 C 1.53087 * 109.15886 * 56.98146 * 14 13 12 16 16 O 1.42908 * 109.47767 * 188.56253 * 10 8 7 17 17 C 1.52111 * 110.50429 * 152.62950 * 5 4 2 18 18 C 1.53345 * 109.44110 * 64.09328 * 17 5 4 19 19 N 1.46936 * 108.68938 * 53.30081 * 18 17 5 20 20 C 1.36932 * 120.55425 * 125.63573 * 19 18 17 21 21 H 1.08004 * 119.99747 * 333.24323 * 20 19 18 22 22 C 1.38802 * 120.00485 * 153.52384 * 20 19 18 23 23 N 1.31625 * 119.99468 * 342.87516 * 22 20 19 24 24 Si 1.86801 * 120.00508 * 162.87672 * 22 20 19 25 25 H 1.48497 * 109.47042 * 89.99732 * 24 22 20 26 26 H 1.48490 * 109.47336 * 209.99857 * 24 22 20 27 27 H 1.48497 * 109.46800 * 329.99999 * 24 22 20 28 28 C 1.46933 * 118.89711 * 305.91204 * 19 18 17 29 29 C 1.52104 * 110.51714 * 276.65609 * 5 4 2 30 30 H 1.09008 * 109.46994 * 181.00013 * 1 2 3 31 31 H 1.08998 * 109.47336 * 301.00445 * 1 2 3 32 32 H 1.08998 * 109.46692 * 61.00548 * 1 2 3 33 33 H 1.09002 * 110.72878 * 100.57900 * 4 2 1 34 34 H 1.09001 * 110.73096 * 337.27124 * 4 2 1 35 35 H 1.08996 * 110.37247 * 82.75231 * 6 5 4 36 36 H 1.08998 * 110.37540 * 205.09144 * 6 5 4 37 37 H 1.08997 * 109.52195 * 297.50225 * 12 10 8 38 38 H 1.09004 * 109.51835 * 57.68313 * 12 10 8 39 39 H 1.08999 * 109.54724 * 62.89460 * 13 12 10 40 40 H 1.09004 * 109.54483 * 183.15484 * 13 12 10 41 41 H 1.08991 * 109.52545 * 176.88522 * 14 13 12 42 42 H 1.08997 * 109.52031 * 297.01535 * 14 13 12 43 43 H 1.09002 * 109.48498 * 62.37474 * 15 14 13 44 44 H 1.09004 * 109.47905 * 182.40180 * 15 14 13 45 45 H 1.09000 * 109.47595 * 304.10363 * 17 5 4 46 46 H 1.09000 * 109.47998 * 184.08145 * 17 5 4 47 47 H 1.09001 * 109.60263 * 293.54063 * 18 17 5 48 48 H 1.09001 * 109.60299 * 173.05927 * 18 17 5 49 49 H 0.97003 * 119.99877 * 180.02562 * 23 22 20 50 50 H 1.09000 * 109.60088 * 173.84840 * 28 19 18 51 51 H 1.09000 * 109.60042 * 294.32384 * 28 19 18 52 52 H 1.09002 * 109.47691 * 55.89637 * 29 5 4 53 53 H 1.08994 * 109.48099 * 175.91944 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0553 -0.7482 -1.2450 5 6 3.2734 -1.5202 -0.6939 6 6 2.8221 -1.8776 0.7358 7 7 2.0331 -0.7136 1.1836 8 6 1.8107 -0.3623 2.4656 9 8 1.0825 0.5735 2.7203 10 6 2.4669 -1.1322 3.5826 11 1 2.2785 -2.1975 3.4494 12 6 3.9758 -0.8742 3.5629 13 6 4.6273 -1.6115 4.7368 14 6 3.9751 -1.1469 6.0427 15 6 2.4663 -1.3945 5.9666 16 8 1.9283 -0.7059 4.8358 17 6 3.5200 -2.7796 -1.5104 18 6 3.8921 -2.3920 -2.9467 19 7 5.0129 -1.4429 -2.9028 20 6 6.1624 -1.6902 -3.6047 21 1 6.4489 -2.7067 -3.8307 22 6 6.9622 -0.6348 -4.0208 23 7 6.4759 0.5879 -4.0494 24 14 8.7287 -0.9498 -4.5401 25 1 8.7734 -1.2326 -5.9972 26 1 9.5533 0.2489 -4.2430 27 1 9.2638 -2.1162 -3.7929 28 6 4.8823 -0.2270 -2.0883 29 6 4.5022 -0.6244 -0.6615 30 1 -0.3633 -1.0276 0.0179 31 1 -0.3634 0.5293 0.8808 32 1 -0.3632 0.4981 -0.8989 33 1 2.3625 -0.0434 -2.0177 34 1 1.3022 -1.4374 -1.6272 35 1 2.2028 -2.7745 0.7252 36 1 3.6878 -2.0208 1.3824 37 1 4.3955 -1.2389 2.6255 38 1 4.1635 0.1956 3.6553 39 1 4.4823 -2.6853 4.6186 40 1 5.6936 -1.3869 4.7618 41 1 4.3943 -1.7068 6.8785 42 1 4.1638 -0.0830 6.1857 43 1 2.2779 -2.4633 5.8647 44 1 1.9913 -1.0267 6.8761 45 1 2.6161 -3.3887 -1.5210 46 1 4.3361 -3.3480 -1.0644 47 1 3.0358 -1.9244 -3.4328 48 1 4.1887 -3.2826 -3.5007 49 1 7.0347 1.3255 -4.3405 50 1 5.8313 0.3091 -2.0766 51 1 4.1042 0.4115 -2.5066 52 1 4.2839 0.2711 -0.0795 53 1 5.3321 -1.1622 -0.2034 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086916641.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:37 Heat of formation + Delta-G solvation = -82.166627 kcal Electronic energy + Delta-G solvation = -31702.360710 eV Core-core repulsion = 27766.291491 eV Total energy + Delta-G solvation = -3936.069219 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.97036 -40.54084 -39.19949 -37.47760 -34.88684 -34.64408 -33.52841 -32.56203 -31.66231 -31.56606 -28.72380 -27.22348 -26.73629 -25.73541 -24.88698 -23.93416 -22.88601 -22.53985 -21.27681 -20.25302 -19.64122 -18.51066 -18.14393 -17.50109 -16.99793 -16.86629 -16.75536 -15.93509 -15.81836 -15.65381 -15.38989 -15.17151 -15.11949 -14.87028 -14.62602 -14.40612 -14.21135 -14.07090 -13.83525 -13.65288 -13.34339 -13.23305 -13.11319 -12.94874 -12.84373 -12.55001 -12.52155 -12.28284 -12.25291 -12.15706 -12.02823 -11.89321 -11.75333 -11.71837 -11.47971 -11.30318 -11.06366 -11.00922 -10.65990 -10.48843 -10.45855 -9.68167 -8.61649 -7.82947 -5.26222 1.47592 1.49704 1.49813 1.58445 1.66443 2.54220 2.91078 3.30078 3.35904 3.51648 3.69802 3.72904 3.78465 3.83111 3.86775 4.00065 4.02553 4.13965 4.17290 4.25033 4.29076 4.35528 4.48228 4.53629 4.58937 4.62233 4.66151 4.75377 4.81103 4.81371 4.83590 4.85433 4.94591 4.96041 5.03692 5.05743 5.09717 5.12628 5.15008 5.24355 5.30394 5.32478 5.34619 5.40754 5.42749 5.47622 5.60643 5.69909 5.85369 6.11925 6.43461 6.48873 7.09381 7.19897 7.93832 8.42969 9.22507 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014334 B = 0.003334 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.867378 B = 8395.185649 C = 9509.230261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.137 3.863 3 H 0.049 0.951 4 C -0.110 4.110 5 C -0.053 4.053 6 C 0.103 3.897 7 N -0.604 5.604 8 C 0.528 3.472 9 O -0.571 6.571 10 C 0.085 3.915 11 H 0.107 0.893 12 C -0.147 4.147 13 C -0.117 4.117 14 C -0.156 4.156 15 C 0.053 3.947 16 O -0.390 6.390 17 C -0.104 4.104 18 C 0.141 3.859 19 N -0.608 5.608 20 C -0.255 4.255 21 H 0.068 0.932 22 C -0.054 4.054 23 N -0.936 5.936 24 Si 0.961 3.039 25 H -0.287 1.287 26 H -0.297 1.297 27 H -0.269 1.269 28 C 0.180 3.820 29 C -0.109 4.109 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.053 0.947 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.106 0.894 45 H 0.091 0.909 46 H 0.065 0.935 47 H 0.017 0.983 48 H 0.053 0.947 49 H 0.247 0.753 50 H 0.049 0.951 51 H -0.004 1.004 52 H 0.047 0.953 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.877 -9.945 17.543 21.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.034 3.966 3 H 0.068 0.932 4 C -0.147 4.147 5 C -0.054 4.054 6 C -0.018 4.018 7 N -0.338 5.338 8 C 0.317 3.683 9 O -0.450 6.450 10 C 0.024 3.976 11 H 0.124 0.876 12 C -0.185 4.185 13 C -0.155 4.155 14 C -0.194 4.194 15 C -0.023 4.023 16 O -0.309 6.309 17 C -0.143 4.143 18 C 0.016 3.984 19 N -0.332 5.332 20 C -0.385 4.385 21 H 0.086 0.914 22 C -0.249 4.249 23 N -0.583 5.583 24 Si 0.790 3.210 25 H -0.214 1.214 26 H -0.224 1.224 27 H -0.193 1.193 28 C 0.054 3.946 29 C -0.149 4.149 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.118 0.882 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.124 0.876 45 H 0.110 0.890 46 H 0.084 0.916 47 H 0.035 0.965 48 H 0.072 0.928 49 H 0.056 0.944 50 H 0.068 0.932 51 H 0.014 0.986 52 H 0.065 0.935 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.343 -9.159 17.730 21.630 hybrid contribution 1.237 0.724 -0.769 1.626 sum -7.107 -8.435 16.961 20.232 Atomic orbital electron populations 1.22040 0.93958 1.02680 1.02242 1.21569 0.94950 0.95449 0.84619 0.93239 1.22706 0.97298 0.99419 0.95322 1.20894 0.94158 0.96178 0.94122 1.22744 0.95782 0.88248 0.95033 1.48547 1.51945 1.29207 1.04075 1.20396 0.80870 0.84140 0.82889 1.90662 1.39229 1.31491 1.83645 1.21848 0.93604 0.98490 0.83611 0.87597 1.22217 0.92879 1.01695 1.01738 1.21612 1.00360 1.00758 0.92736 1.22212 0.95808 1.02290 0.99041 1.22919 0.94001 0.97373 0.88038 1.88012 1.64951 1.64057 1.13919 1.21713 1.01985 0.95286 0.95363 1.21096 0.89349 0.92531 0.95469 1.44295 1.13674 1.22511 1.52715 1.19528 0.98881 0.92118 1.28018 0.91385 1.25705 1.02794 0.95857 1.00497 1.70187 1.35891 0.99797 1.52417 0.85365 0.80888 0.76860 0.77892 1.21422 1.22374 1.19343 1.20490 0.98401 0.87797 0.87899 1.21688 0.96860 0.98356 0.97946 0.91316 0.93574 0.90590 0.91575 0.88618 0.88321 0.88864 0.89104 0.92767 0.89494 0.90183 0.88204 0.92354 0.91062 0.87579 0.89016 0.91616 0.96517 0.92833 0.94424 0.93235 0.98606 0.93459 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 9.09 71.98 0.65 -3.16 16 2 C 0.14 3.81 3.10 45.38 0.14 3.95 16 3 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 4 C -0.11 -2.96 4.45 31.56 0.14 -2.81 16 5 C -0.05 -1.41 0.55 -51.92 -0.03 -1.44 16 6 C 0.10 2.15 5.44 86.55 0.47 2.62 16 7 N -0.60 -15.68 3.06 -788.83 -2.41 -18.09 16 8 C 0.53 15.62 7.01 87.66 0.61 16.24 16 9 O -0.57 -22.04 15.43 15.87 0.24 -21.79 16 10 C 0.09 1.91 2.40 29.88 0.07 1.99 16 11 H 0.11 1.77 8.01 -2.39 -0.02 1.75 16 12 C -0.15 -2.90 5.24 30.68 0.16 -2.74 16 13 C -0.12 -1.61 6.03 30.71 0.19 -1.42 16 14 C -0.16 -2.08 6.14 30.68 0.19 -1.89 16 15 C 0.05 0.81 6.84 72.01 0.49 1.31 16 16 O -0.39 -9.93 9.95 -130.09 -1.29 -11.23 16 17 C -0.10 -2.75 4.84 30.42 0.15 -2.61 16 18 C 0.14 5.14 6.25 86.41 0.54 5.68 16 19 N -0.61 -28.60 2.99 -699.31 -2.09 -30.69 16 20 C -0.26 -13.47 9.59 84.03 0.81 -12.66 16 21 H 0.07 3.48 7.88 -2.91 -0.02 3.45 16 22 C -0.05 -2.94 4.93 84.86 0.42 -2.52 16 23 N -0.94 -54.83 11.08 21.65 0.24 -54.59 16 24 Si 0.96 44.09 29.59 68.60 2.03 46.12 16 25 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 26 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 28 C 0.18 8.28 5.01 86.27 0.43 8.71 16 29 C -0.11 -3.79 4.84 30.27 0.15 -3.64 16 30 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.05 1.38 6.78 -2.39 -0.02 1.36 16 32 H 0.08 1.70 8.14 -2.39 -0.02 1.69 16 33 H 0.07 2.17 6.18 -2.39 -0.01 2.16 16 34 H 0.10 2.18 7.68 -2.39 -0.02 2.16 16 35 H 0.10 1.55 7.99 -2.39 -0.02 1.54 16 36 H 0.09 1.71 5.01 -2.39 -0.01 1.69 16 37 H 0.09 1.69 5.47 -2.39 -0.01 1.67 16 38 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 45 H 0.09 1.81 8.09 -2.39 -0.02 1.79 16 46 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.02 0.63 7.62 -2.39 -0.02 0.61 16 48 H 0.05 1.93 7.93 -2.39 -0.02 1.91 16 49 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 50 H 0.05 2.68 5.90 -2.39 -0.01 2.67 16 51 H 0.00 -0.20 6.55 -2.39 -0.02 -0.22 16 52 H 0.05 1.64 7.82 -2.39 -0.02 1.62 16 53 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -71.23 390.08 3.17 -68.06 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.88 Total: 16.61 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 5.58 Total: 5.60 kcal Atomic # 7 Polarization: -99.10 SS G_CDS: -4.27 Total: -103.37 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -1.05 Total: -33.02 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -71.23 3.17 -68.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086916641.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.103 kcal (2) G-P(sol) polarization free energy of solvation -71.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds