Wall clock time and date at job start Tue Mar 31 2020 19:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.87486 * 2 1 4 4 C 1.54463 * 109.87802 * 121.15818 * 2 1 3 5 5 C 1.54369 * 102.87682 * 140.92299 * 4 2 1 6 6 C 1.54139 * 102.47546 * 325.36075 * 5 4 2 7 7 N 1.47086 * 109.87903 * 238.99118 * 2 1 3 8 8 C 1.34772 * 125.62440 * 61.59819 * 7 2 1 9 9 O 1.21282 * 120.00251 * 359.95082 * 8 7 2 10 10 C 1.50705 * 120.00009 * 179.97438 * 8 7 2 11 11 H 1.08990 * 109.47942 * 304.98253 * 10 8 7 12 12 C 1.53096 * 109.47519 * 65.00039 * 10 8 7 13 13 C 1.53173 * 109.16493 * 177.59145 * 12 10 8 14 14 C 1.53181 * 109.03662 * 303.02532 * 13 12 10 15 15 C 1.53094 * 109.16586 * 56.97300 * 14 13 12 16 16 O 1.42897 * 109.41616 * 302.39539 * 15 14 13 17 17 C 1.52110 * 110.56279 * 207.40791 * 5 4 2 18 18 C 1.53337 * 109.44246 * 177.19684 * 17 5 4 19 19 N 1.46931 * 108.68650 * 53.30122 * 18 17 5 20 20 C 1.36934 * 120.55140 * 125.63870 * 19 18 17 21 21 H 1.08002 * 119.99827 * 332.15554 * 20 19 18 22 22 C 1.38810 * 120.00391 * 152.15312 * 20 19 18 23 23 N 1.31621 * 119.99829 * 342.66867 * 22 20 19 24 24 Si 1.86803 * 120.00127 * 162.94266 * 22 20 19 25 25 H 1.48498 * 109.46777 * 179.72799 * 24 22 20 26 26 H 1.48499 * 109.47009 * 299.72421 * 24 22 20 27 27 H 1.48498 * 109.47055 * 59.72837 * 24 22 20 28 28 C 1.46933 * 118.90026 * 305.91242 * 19 18 17 29 29 C 1.52110 * 110.55543 * 83.31478 * 5 4 2 30 30 H 1.09002 * 109.47097 * 179.55297 * 1 2 3 31 31 H 1.08999 * 109.46906 * 299.55482 * 1 2 3 32 32 H 1.08998 * 109.46868 * 59.55168 * 1 2 3 33 33 H 1.09004 * 110.73378 * 22.57467 * 4 2 1 34 34 H 1.09003 * 110.73597 * 259.27151 * 4 2 1 35 35 H 1.09000 * 110.37326 * 154.90596 * 6 5 4 36 36 H 1.08998 * 110.37790 * 277.13960 * 6 5 4 37 37 H 1.09002 * 109.52169 * 297.49981 * 12 10 8 38 38 H 1.09005 * 109.52540 * 57.62359 * 12 10 8 39 39 H 1.09008 * 109.54203 * 62.88363 * 13 12 10 40 40 H 1.08996 * 109.55049 * 183.06354 * 13 12 10 41 41 H 1.09001 * 109.52616 * 176.88317 * 14 13 12 42 42 H 1.09001 * 109.51891 * 297.00519 * 14 13 12 43 43 H 1.09001 * 109.47459 * 62.37878 * 15 14 13 44 44 H 1.08996 * 109.47681 * 182.39928 * 15 14 13 45 45 H 1.09000 * 109.47753 * 57.20824 * 17 5 4 46 46 H 1.09002 * 109.47968 * 297.18829 * 17 5 4 47 47 H 1.09007 * 109.60367 * 293.53996 * 18 17 5 48 48 H 1.09003 * 109.73776 * 173.14059 * 18 17 5 49 49 H 0.96998 * 119.99934 * 179.97438 * 23 22 20 50 50 H 1.09000 * 109.60012 * 173.84908 * 28 19 18 51 51 H 1.09005 * 109.59922 * 294.32192 * 28 19 18 52 52 H 1.08999 * 109.47146 * 302.79705 * 29 5 4 53 53 H 1.09001 * 109.47725 * 62.80810 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0552 -0.7516 1.2430 5 6 3.2708 -1.5252 0.6892 6 6 2.8169 -1.8791 -0.7407 7 7 2.0301 -0.7126 -1.1855 8 6 1.8070 -0.3583 -2.4666 9 8 1.1419 0.6245 -2.7169 10 6 2.3836 -1.1836 -3.5880 11 1 3.4615 -1.2745 -3.4553 12 6 1.7484 -2.5765 -3.5754 13 6 2.2944 -3.3889 -4.7535 14 6 2.0119 -2.6328 -6.0554 15 6 2.6369 -1.2377 -5.9722 16 8 2.1089 -0.5475 -4.8378 17 6 3.5162 -2.7874 1.5018 18 6 4.6831 -3.5705 0.8884 19 7 5.8382 -2.6714 0.7611 20 6 7.0472 -3.0097 1.3081 21 1 7.0867 -3.6532 2.1745 22 6 8.2218 -2.5256 0.7489 23 7 8.2167 -2.0385 -0.4738 24 14 9.8114 -2.5723 1.7291 25 1 10.9141 -2.0066 0.9110 26 1 9.6525 -1.7697 2.9683 27 1 10.1311 -3.9776 2.0869 28 6 5.6731 -1.4006 0.0424 29 6 4.5019 -0.6325 0.6558 30 1 -0.3633 -1.0276 -0.0080 31 1 -0.3633 0.5069 0.8939 32 1 -0.3633 0.5208 -0.8859 33 1 1.3012 -1.4399 1.6250 34 1 2.3649 -0.0489 2.0166 35 1 3.6815 -2.0230 -1.3886 36 1 2.1972 -2.7757 -0.7313 37 1 1.9939 -3.0803 -2.6405 38 1 0.6660 -2.4842 -3.6660 39 1 3.3698 -3.5237 -4.6362 40 1 1.8059 -4.3628 -4.7826 41 1 2.4459 -3.1769 -6.8943 42 1 0.9350 -2.5426 -6.1979 43 1 3.7183 -1.3294 -5.8710 44 1 2.4026 -0.6799 -6.8788 45 1 2.6188 -3.4059 1.4926 46 1 3.7605 -2.5166 2.5290 47 1 4.3976 -3.9407 -0.0964 48 1 4.9425 -4.4100 1.5334 49 1 9.0375 -1.6999 -0.8644 50 1 6.5839 -0.8086 0.1323 51 1 5.4658 -1.5994 -1.0092 52 1 4.2924 0.2531 0.0560 53 1 4.7600 -0.3312 1.6710 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086916642.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:42 Heat of formation + Delta-G solvation = -84.700741 kcal Electronic energy + Delta-G solvation = -32073.021088 eV Core-core repulsion = 28136.841981 eV Total energy + Delta-G solvation = -3936.179107 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.99331 -40.53876 -39.20334 -37.49026 -34.91848 -34.63384 -33.57977 -32.50571 -31.71804 -31.55119 -28.75666 -27.22784 -26.57973 -25.90433 -24.86197 -23.95764 -23.16194 -22.16438 -21.34005 -20.32715 -19.66785 -18.50540 -18.34832 -17.46446 -16.90183 -16.83502 -16.63465 -16.36792 -15.74069 -15.53604 -15.32040 -15.29508 -15.03894 -14.82308 -14.73263 -14.41033 -14.28646 -13.90904 -13.71828 -13.68246 -13.44928 -13.17841 -13.05724 -12.95286 -12.87089 -12.56863 -12.54024 -12.34842 -12.28245 -12.19206 -12.00988 -11.95803 -11.84089 -11.77978 -11.51079 -11.36420 -11.05898 -10.92645 -10.72423 -10.50443 -10.46311 -9.69430 -8.61062 -7.83952 -5.27703 1.46959 1.47763 1.50255 1.56023 1.66338 2.53706 2.86508 3.29689 3.33997 3.51125 3.69777 3.71240 3.75654 3.82192 3.87268 3.97908 3.99904 4.13217 4.15321 4.24410 4.30394 4.43205 4.47152 4.54810 4.56581 4.58784 4.69332 4.73248 4.77241 4.77428 4.83050 4.84682 4.94893 4.97552 4.98402 5.03228 5.07636 5.09135 5.13756 5.24112 5.30457 5.32152 5.34517 5.39665 5.43303 5.45826 5.58618 5.69107 5.80812 6.06429 6.42922 6.43247 7.06789 7.19428 7.92783 8.42434 9.21437 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011404 B = 0.004028 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.714845 B = 6949.368138 C = 8364.222643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.131 3.869 3 H 0.056 0.944 4 C -0.106 4.106 5 C -0.054 4.054 6 C 0.109 3.891 7 N -0.603 5.603 8 C 0.532 3.468 9 O -0.568 6.568 10 C 0.078 3.922 11 H 0.077 0.923 12 C -0.139 4.139 13 C -0.121 4.121 14 C -0.151 4.151 15 C 0.049 3.951 16 O -0.386 6.386 17 C -0.104 4.104 18 C 0.138 3.862 19 N -0.607 5.607 20 C -0.258 4.258 21 H 0.067 0.933 22 C -0.049 4.049 23 N -0.934 5.934 24 Si 0.958 3.042 25 H -0.299 1.299 26 H -0.281 1.281 27 H -0.275 1.275 28 C 0.182 3.818 29 C -0.113 4.113 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.040 0.960 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.053 0.947 44 H 0.112 0.888 45 H 0.093 0.907 46 H 0.063 0.937 47 H 0.022 0.978 48 H 0.054 0.946 49 H 0.247 0.753 50 H 0.044 0.956 51 H -0.002 1.002 52 H 0.046 0.954 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.028 -3.140 -3.127 16.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.029 3.971 3 H 0.075 0.925 4 C -0.143 4.143 5 C -0.055 4.055 6 C -0.013 4.013 7 N -0.337 5.337 8 C 0.321 3.679 9 O -0.447 6.447 10 C 0.017 3.983 11 H 0.094 0.906 12 C -0.177 4.177 13 C -0.159 4.159 14 C -0.189 4.189 15 C -0.027 4.027 16 O -0.305 6.305 17 C -0.144 4.144 18 C 0.013 3.987 19 N -0.330 5.330 20 C -0.388 4.388 21 H 0.085 0.915 22 C -0.244 4.244 23 N -0.581 5.581 24 Si 0.787 3.213 25 H -0.225 1.225 26 H -0.207 1.207 27 H -0.200 1.200 28 C 0.056 3.944 29 C -0.152 4.152 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.059 0.941 33 H 0.123 0.877 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.130 0.870 45 H 0.112 0.888 46 H 0.082 0.918 47 H 0.040 0.960 48 H 0.072 0.928 49 H 0.056 0.944 50 H 0.063 0.937 51 H 0.016 0.984 52 H 0.064 0.936 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.364 -2.390 -3.449 16.893 hybrid contribution 1.713 0.247 0.026 1.731 sum -14.651 -2.142 -3.423 15.197 Atomic orbital electron populations 1.22048 0.93672 1.02700 1.02481 1.21725 0.95191 0.95766 0.84462 0.92535 1.22764 0.96743 0.99432 0.95374 1.20909 0.94252 0.96387 0.93938 1.22582 0.94539 0.88207 0.95956 1.48563 1.51820 1.29034 1.04295 1.20150 0.80121 0.84674 0.82976 1.90644 1.41351 1.28851 1.83834 1.21843 0.99297 0.92984 0.84153 0.90576 1.22141 1.01087 0.92885 1.01584 1.21625 1.01653 0.99315 0.93262 1.22181 1.02155 0.95646 0.98893 1.22928 0.97603 0.94037 0.88151 1.87978 1.78576 1.50156 1.13786 1.21740 0.98847 0.94988 0.98784 1.21152 0.87450 0.92440 0.97651 1.44236 1.07024 1.17202 1.64544 1.19473 0.84251 1.28184 1.06890 0.91530 1.25681 1.00438 1.02289 0.95981 1.70167 1.27169 1.46925 1.13792 0.85474 0.79721 0.78031 0.78047 1.22499 1.20689 1.20036 1.20438 0.95414 0.86767 0.91756 1.21721 0.95640 0.97279 1.00535 0.91449 0.89569 0.94090 0.87748 0.89235 0.91714 0.88754 0.89126 0.90901 0.91610 0.88960 0.88455 0.90945 0.92854 0.87049 0.88817 0.91833 0.96038 0.92755 0.94393 0.93710 0.98431 0.93553 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 9.10 71.98 0.66 -2.66 16 2 C 0.13 3.30 3.10 45.38 0.14 3.44 16 3 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 4 C -0.11 -2.21 5.42 31.56 0.17 -2.04 16 5 C -0.05 -1.46 0.54 -51.92 -0.03 -1.48 16 6 C 0.11 2.88 3.33 86.56 0.29 3.16 16 7 N -0.60 -17.13 3.06 -788.80 -2.41 -19.54 16 8 C 0.53 17.71 7.03 87.66 0.62 18.32 16 9 O -0.57 -22.96 15.54 15.95 0.25 -22.72 16 10 C 0.08 2.28 2.42 29.88 0.07 2.35 16 11 H 0.08 2.32 7.63 -2.39 -0.02 2.30 16 12 C -0.14 -3.08 5.26 30.68 0.16 -2.92 16 13 C -0.12 -2.21 6.03 30.71 0.19 -2.02 16 14 C -0.15 -2.60 6.14 30.69 0.19 -2.41 16 15 C 0.05 1.07 6.84 72.01 0.49 1.56 16 16 O -0.39 -11.99 9.94 -130.00 -1.29 -13.28 16 17 C -0.10 -2.75 4.83 30.41 0.15 -2.61 16 18 C 0.14 4.91 6.25 86.41 0.54 5.45 16 19 N -0.61 -28.11 2.99 -699.34 -2.09 -30.20 16 20 C -0.26 -13.51 9.57 84.03 0.80 -12.70 16 21 H 0.07 3.39 7.89 -2.91 -0.02 3.37 16 22 C -0.05 -2.64 4.91 84.86 0.42 -2.22 16 23 N -0.93 -54.17 11.20 21.65 0.24 -53.92 16 24 Si 0.96 43.98 29.59 68.60 2.03 46.01 16 25 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 26 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 27 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 28 C 0.18 8.32 4.99 86.26 0.43 8.75 16 29 C -0.11 -3.98 4.82 30.27 0.15 -3.84 16 30 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.04 1.13 6.88 -2.39 -0.02 1.12 16 33 H 0.10 1.67 7.70 -2.38 -0.02 1.65 16 34 H 0.09 1.78 8.01 -2.39 -0.02 1.76 16 35 H 0.06 2.03 5.42 -2.39 -0.01 2.02 16 36 H 0.09 2.01 6.98 -2.39 -0.02 2.00 16 37 H 0.09 1.84 5.61 -2.39 -0.01 1.83 16 38 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.09 1.81 8.09 -2.39 -0.02 1.79 16 46 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.02 0.75 7.63 -2.38 -0.02 0.73 16 48 H 0.05 1.92 7.93 -2.39 -0.02 1.90 16 49 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 50 H 0.04 2.42 6.02 -2.39 -0.01 2.40 16 51 H 0.00 -0.11 6.58 -2.38 -0.02 -0.12 16 52 H 0.05 1.65 7.84 -2.39 -0.02 1.63 16 53 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -69.54 390.42 3.03 -66.51 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.87 Total: 19.00 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 5.43 Total: 8.13 kcal Atomic # 7 Polarization: -99.41 SS G_CDS: -4.26 Total: -103.66 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -1.04 Total: -36.00 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -69.54 3.03 -66.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086916642.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.192 kcal (2) G-P(sol) polarization free energy of solvation -69.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds