Wall clock time and date at job start Tue Mar 31 2020 19:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 114.00369 * 2 1 4 4 H 1.09004 * 109.46645 * 22.45135 * 3 2 1 5 5 C 1.50693 * 109.47179 * 142.45062 * 3 2 1 6 6 O 1.21283 * 120.00145 * 10.87353 * 5 3 2 7 7 N 1.34778 * 119.99939 * 190.87072 * 5 3 2 8 8 C 1.47580 * 125.62787 * 354.88111 * 7 5 3 9 9 C 1.54113 * 104.78666 * 203.29627 * 8 7 5 10 10 C 1.54398 * 102.48012 * 323.92533 * 9 8 7 11 11 C 1.47083 * 125.63030 * 174.85545 * 7 5 3 12 12 H 1.09002 * 109.87757 * 59.61479 * 11 7 5 13 13 C 1.52997 * 110.00322 * 298.53047 * 11 7 5 14 14 C 1.52110 * 110.70249 * 206.07294 * 9 8 7 15 15 C 1.53340 * 109.44042 * 176.91725 * 14 9 8 16 16 N 1.46931 * 108.68779 * 53.30664 * 15 14 9 17 17 C 1.36931 * 120.55636 * 125.63179 * 16 15 14 18 18 H 1.08002 * 119.99666 * 332.39597 * 17 16 15 19 19 C 1.38805 * 120.00700 * 152.39468 * 17 16 15 20 20 N 1.31624 * 120.00569 * 143.70422 * 19 17 16 21 21 Si 1.86800 * 119.99835 * 323.70863 * 19 17 16 22 22 H 1.48501 * 109.47027 * 269.99445 * 21 19 17 23 23 H 1.48500 * 109.47250 * 29.99708 * 21 19 17 24 24 H 1.48499 * 109.47384 * 149.99607 * 21 19 17 25 25 C 1.46932 * 118.89759 * 305.90656 * 16 15 14 26 26 C 1.52110 * 110.69224 * 81.78308 * 9 8 7 27 27 C 1.52999 * 109.47155 * 262.45485 * 3 2 1 28 28 C 1.53010 * 117.49582 * 8.62987 * 27 3 2 29 29 C 1.52995 * 117.49712 * 300.00963 * 27 3 2 30 30 H 1.08997 * 109.46883 * 63.15944 * 1 2 3 31 31 H 1.09002 * 109.46986 * 183.15954 * 1 2 3 32 32 H 1.09001 * 109.46875 * 303.15437 * 1 2 3 33 33 H 1.09003 * 110.36922 * 84.47221 * 8 7 5 34 34 H 1.08998 * 110.37678 * 322.12772 * 8 7 5 35 35 H 1.09000 * 110.73216 * 152.98223 * 10 9 8 36 36 H 1.08999 * 110.73261 * 276.29769 * 10 9 8 37 37 H 1.08995 * 109.47078 * 302.08795 * 13 11 7 38 38 H 1.09001 * 109.46960 * 62.08866 * 13 11 7 39 39 H 1.09002 * 109.46568 * 182.08800 * 13 11 7 40 40 H 1.09007 * 109.47226 * 56.93397 * 14 9 8 41 41 H 1.08991 * 109.47398 * 296.91329 * 14 9 8 42 42 H 1.09000 * 109.60504 * 293.54249 * 15 14 9 43 43 H 1.09004 * 109.59895 * 173.05850 * 15 14 9 44 44 H 0.96998 * 119.99623 * 354.90843 * 20 19 17 45 45 H 1.08994 * 109.60352 * 173.84856 * 25 16 15 46 46 H 1.09006 * 109.59671 * 294.32704 * 25 16 15 47 47 H 1.09004 * 109.47656 * 303.07143 * 26 9 8 48 48 H 1.08993 * 109.47519 * 63.08889 * 26 9 8 49 49 H 1.09000 * 115.55142 * 154.33637 * 27 3 2 50 50 H 1.08997 * 117.49672 * 0.02562 * 28 27 3 51 51 H 1.09000 * 117.49444 * 145.02093 * 28 27 3 52 52 H 1.09001 * 117.49653 * 214.97806 * 29 27 3 53 53 H 1.09000 * 117.50024 * 359.97438 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2904 2.0237 0.3925 5 6 3.2437 1.3061 0.8659 6 8 3.7038 0.2580 1.2668 7 7 3.8355 2.4715 1.1947 8 6 3.4482 3.8041 0.6927 9 6 4.7148 4.6676 0.8514 10 6 5.3237 4.1287 2.1639 11 6 4.9737 2.6251 2.1136 12 1 5.8279 2.0580 1.7436 13 6 4.5887 2.1336 3.5104 14 6 4.3492 6.1368 0.9974 15 6 5.6225 6.9590 1.2302 16 7 6.5817 6.6544 0.1597 17 6 7.1233 7.6594 -0.5964 18 1 6.5753 8.5779 -0.7459 19 6 8.3766 7.4977 -1.1707 20 7 8.6248 8.0005 -2.3616 21 14 9.7112 6.5664 -0.2536 22 1 10.4908 7.5142 0.5826 23 1 9.0878 5.5365 0.6159 24 1 10.6158 5.9082 -1.2300 25 6 6.9456 5.2529 -0.0901 26 6 5.6690 4.4410 -0.3114 27 6 2.3908 1.6943 -1.4300 28 6 1.9211 0.7763 -2.5604 29 6 3.3976 0.8032 -2.1602 30 1 -0.3633 0.4640 -0.9169 31 1 -0.3633 -1.0261 0.0566 32 1 -0.3633 0.5620 0.8604 33 1 2.6332 4.2125 1.2902 34 1 3.1582 3.7449 -0.3564 35 1 6.4040 4.2732 2.1759 36 1 4.8600 4.6041 3.0281 37 1 3.7234 2.6926 3.8665 38 1 4.3431 1.0725 3.4673 39 1 5.4253 2.2856 4.1924 40 1 3.6762 6.2612 1.8459 41 1 3.8557 6.4806 0.0885 42 1 6.0560 6.6965 2.1952 43 1 5.3800 8.0215 1.2123 44 1 7.9122 8.4192 -2.8693 45 1 7.5750 5.1912 -0.9778 46 1 7.4836 4.8559 0.7708 47 1 5.9173 3.3816 -0.3766 48 1 5.1940 4.7607 -1.2388 49 1 2.4266 2.7647 -1.6324 50 1 1.3407 -0.1043 -2.2853 51 1 1.6476 1.2429 -3.5068 52 1 4.0955 1.2874 -2.8433 53 1 3.7892 -0.0598 -1.6217 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086920254.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:11 Heat of formation + Delta-G solvation = -41.908087 kcal Electronic energy + Delta-G solvation = -31889.834182 eV Core-core repulsion = 27955.510704 eV Total energy + Delta-G solvation = -3934.323478 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.95916 -40.48772 -38.94575 -37.56316 -36.87505 -34.90125 -33.10015 -32.92728 -31.93470 -29.78954 -28.62762 -27.17015 -27.01206 -25.31380 -24.37363 -23.60171 -23.14047 -22.48987 -21.77745 -20.20693 -19.95331 -18.85510 -18.12666 -17.88464 -17.47826 -16.92794 -16.67030 -16.08873 -16.03874 -15.65926 -15.55672 -15.30603 -15.15221 -14.89208 -14.82550 -14.30151 -14.14898 -14.03544 -13.88600 -13.72807 -13.46940 -13.27357 -13.09099 -12.87166 -12.75324 -12.42383 -12.40059 -12.29914 -12.13984 -12.11633 -11.99354 -11.74296 -11.68945 -11.55001 -11.37442 -11.25072 -11.09206 -11.02242 -10.86869 -10.40127 -10.37150 -9.64998 -8.94278 -8.53218 -5.37624 1.52184 1.52599 1.56198 1.71249 1.74443 2.61313 2.68948 2.90072 2.98565 3.44140 3.44302 3.54531 3.58461 3.77138 3.80111 3.86777 4.06174 4.15031 4.18850 4.19432 4.27279 4.29199 4.43129 4.44152 4.51216 4.53652 4.56574 4.61109 4.70294 4.74644 4.75688 4.79462 4.84614 4.86623 4.88714 4.94448 4.99142 5.07891 5.09485 5.13298 5.22935 5.24073 5.24868 5.26194 5.31857 5.39848 5.42557 5.60954 5.89876 6.05256 6.32470 6.50806 6.95548 7.13119 7.71172 8.19816 8.83425 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015684 B = 0.003536 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.840577 B = 7916.965636 C = 8531.776237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.384 6.384 3 C 0.111 3.889 4 H 0.115 0.885 5 C 0.529 3.471 6 O -0.570 6.570 7 N -0.604 5.604 8 C 0.106 3.894 9 C -0.053 4.053 10 C -0.112 4.112 11 C 0.135 3.865 12 H 0.052 0.948 13 C -0.151 4.151 14 C -0.105 4.105 15 C 0.140 3.860 16 N -0.611 5.611 17 C -0.343 4.343 18 H 0.031 0.969 19 C -0.048 4.048 20 N -0.940 5.940 21 Si 1.056 2.944 22 H -0.297 1.297 23 H -0.237 1.237 24 H -0.304 1.304 25 C 0.143 3.857 26 C -0.109 4.109 27 C -0.182 4.182 28 C -0.144 4.144 29 C -0.184 4.184 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.041 0.959 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.054 0.946 42 H 0.038 0.962 43 H 0.045 0.955 44 H 0.253 0.747 45 H 0.033 0.967 46 H 0.039 0.961 47 H 0.058 0.942 48 H 0.050 0.950 49 H 0.133 0.867 50 H 0.102 0.898 51 H 0.113 0.887 52 H 0.096 0.904 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.545 -12.723 8.094 24.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.303 6.303 3 C 0.049 3.951 4 H 0.133 0.867 5 C 0.318 3.682 6 O -0.449 6.449 7 N -0.338 5.338 8 C -0.016 4.016 9 C -0.054 4.054 10 C -0.150 4.150 11 C 0.032 3.968 12 H 0.071 0.929 13 C -0.209 4.209 14 C -0.145 4.145 15 C 0.015 3.985 16 N -0.336 5.336 17 C -0.472 4.472 18 H 0.049 0.951 19 C -0.246 4.246 20 N -0.580 5.580 21 Si 0.882 3.118 22 H -0.225 1.225 23 H -0.162 1.162 24 H -0.232 1.232 25 C 0.018 3.982 26 C -0.148 4.148 27 C -0.201 4.201 28 C -0.181 4.181 29 C -0.221 4.221 30 H 0.081 0.919 31 H 0.116 0.884 32 H 0.072 0.928 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.118 0.882 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.098 0.902 40 H 0.114 0.886 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.052 0.948 46 H 0.057 0.943 47 H 0.076 0.924 48 H 0.069 0.931 49 H 0.151 0.849 50 H 0.120 0.880 51 H 0.131 0.869 52 H 0.115 0.885 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.688 -13.970 8.237 23.998 hybrid contribution -1.048 1.063 -0.543 1.589 sum -18.737 -12.907 7.695 24.018 Atomic orbital electron populations 1.23148 0.78663 1.04197 1.01539 1.87992 1.21873 1.25689 1.94700 1.21372 0.93207 0.87136 0.93362 0.86734 1.20519 0.85414 0.82126 0.80154 1.90669 1.65842 1.32231 1.56162 1.48548 1.33275 1.06491 1.45488 1.22643 0.97312 0.80781 1.00878 1.20869 0.94316 0.95310 0.94889 1.22772 1.02020 0.92132 0.98027 1.21592 0.88068 0.97056 0.90074 0.92945 1.22029 1.02709 1.00826 0.95310 1.21701 0.97774 0.92640 1.02342 1.21150 0.89631 0.97537 0.90192 1.44391 1.50650 1.01175 1.37422 1.19897 1.00695 0.98701 1.27951 0.95139 1.27048 0.99850 1.01145 0.96599 1.70998 1.37172 1.40281 1.09552 0.84109 0.75046 0.76689 0.75956 1.22518 1.16151 1.23161 1.21291 0.95204 0.83984 0.97735 1.21636 0.96811 0.98648 0.97747 1.22810 1.06881 0.98771 0.91612 1.22984 0.96032 1.01268 0.97781 1.22819 0.93727 1.01801 1.03794 0.91948 0.88400 0.92761 0.88379 0.89521 0.90645 0.88155 0.91246 0.93975 0.90248 0.88649 0.92682 0.94424 0.93611 0.93801 0.94846 0.94337 0.92353 0.93085 0.84922 0.87953 0.86863 0.88536 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.24 113.37 1.16 1.42 16 2 O -0.38 -8.59 8.51 -130.17 -1.11 -9.70 16 3 C 0.11 2.23 2.40 29.85 0.07 2.30 16 4 H 0.12 1.63 7.59 -2.39 -0.02 1.61 16 5 C 0.53 14.20 6.59 87.65 0.58 14.78 16 6 O -0.57 -20.39 15.78 15.77 0.25 -20.14 16 7 N -0.60 -13.98 3.06 -788.83 -2.42 -16.39 16 8 C 0.11 1.99 5.46 86.55 0.47 2.46 16 9 C -0.05 -1.27 0.55 -51.92 -0.03 -1.30 16 10 C -0.11 -2.49 4.45 31.57 0.14 -2.35 16 11 C 0.14 3.22 3.05 45.38 0.14 3.36 16 12 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 13 C -0.15 -3.20 9.10 71.98 0.66 -2.54 16 14 C -0.11 -2.62 4.84 30.41 0.15 -2.47 16 15 C 0.14 4.76 6.25 86.41 0.54 5.30 16 16 N -0.61 -26.94 2.71 -699.33 -1.89 -28.83 16 17 C -0.34 -18.80 9.69 84.03 0.81 -17.98 16 18 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 19 C -0.05 -2.78 4.81 84.86 0.41 -2.37 16 20 N -0.94 -58.69 13.70 21.65 0.30 -58.40 16 21 Si 1.06 50.87 26.99 68.60 1.85 52.72 16 22 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 23 H -0.24 -10.01 4.76 99.48 0.47 -9.53 16 24 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 25 C 0.14 5.72 4.03 86.27 0.35 6.07 16 26 C -0.11 -3.45 4.84 30.27 0.15 -3.30 16 27 C -0.18 -3.38 5.05 -10.79 -0.05 -3.44 16 28 C -0.14 -2.44 9.60 30.60 0.29 -2.15 16 29 C -0.18 -4.15 9.81 30.59 0.30 -3.85 16 30 H 0.06 0.61 7.66 -2.39 -0.02 0.59 16 31 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.05 0.58 8.04 -2.39 -0.02 0.56 16 33 H 0.10 1.34 7.99 -2.39 -0.02 1.32 16 34 H 0.09 1.53 5.21 -2.39 -0.01 1.52 16 35 H 0.07 1.93 6.18 -2.39 -0.01 1.92 16 36 H 0.10 1.80 7.68 -2.39 -0.02 1.78 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.04 1.10 7.08 -2.39 -0.02 1.08 16 39 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 40 H 0.10 1.70 8.09 -2.38 -0.02 1.68 16 41 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.04 1.19 7.62 -2.39 -0.02 1.17 16 43 H 0.05 1.65 7.93 -2.38 -0.02 1.63 16 44 H 0.25 15.86 8.73 -92.71 -0.81 15.05 16 45 H 0.03 1.54 5.76 -2.39 -0.01 1.52 16 46 H 0.04 1.49 5.07 -2.38 -0.01 1.48 16 47 H 0.06 1.80 7.82 -2.39 -0.02 1.78 16 48 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.13 2.09 6.32 -2.39 -0.02 2.08 16 50 H 0.10 1.76 6.37 -2.39 -0.02 1.74 16 51 H 0.11 1.51 8.14 -2.39 -0.02 1.50 16 52 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 53 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -73.59 392.96 3.72 -69.87 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.61 Total: 16.93 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: 6.13 Total: -6.05 kcal Atomic # 7 Polarization: -99.61 SS G_CDS: -4.01 Total: -103.62 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.86 Total: -29.84 kcal Atomic # 14 Polarization: 50.87 SS G_CDS: 1.85 Total: 52.72 kcal Total: -73.59 3.72 -69.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086920254.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.957 kcal (2) G-P(sol) polarization free energy of solvation -73.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds