Wall clock time and date at job start Tue Mar 31 2020 19:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 113.99424 * 2 1 4 4 H 1.08993 * 109.47634 * 338.26250 * 3 2 1 5 5 C 1.50702 * 109.46994 * 218.25854 * 3 2 1 6 6 O 1.21282 * 120.00049 * 355.00444 * 5 3 2 7 7 N 1.34774 * 120.00392 * 175.00368 * 5 3 2 8 8 C 1.47176 * 125.65634 * 0.02562 * 7 5 3 9 9 C 1.53698 * 107.10907 * 181.47240 * 8 7 5 10 10 C 1.54517 * 103.64807 * 21.54082 * 9 8 7 11 11 C 1.47482 * 125.66471 * 179.72042 * 7 5 3 12 12 H 1.08999 * 110.35365 * 274.87475 * 11 7 5 13 13 C 1.52992 * 110.35497 * 37.16068 * 11 7 5 14 14 C 1.52275 * 110.63345 * 263.43223 * 9 8 7 15 15 C 1.53320 * 109.41580 * 296.23300 * 14 9 8 16 16 N 1.46918 * 108.71080 * 306.49289 * 15 14 9 17 17 C 1.36936 * 120.56403 * 234.25600 * 16 15 14 18 18 H 1.07999 * 120.00236 * 30.01712 * 17 16 15 19 19 C 1.38814 * 120.00074 * 210.01469 * 17 16 15 20 20 N 1.31615 * 119.99848 * 13.10781 * 19 17 16 21 21 Si 1.86803 * 119.99990 * 193.10250 * 19 17 16 22 22 H 1.48501 * 109.47018 * 90.00359 * 21 19 17 23 23 H 1.48503 * 109.47106 * 210.00219 * 21 19 17 24 24 H 1.48496 * 109.47178 * 330.00266 * 21 19 17 25 25 C 1.46935 * 118.87569 * 54.23200 * 16 15 14 26 26 C 1.52273 * 110.62432 * 139.65864 * 9 8 7 27 27 C 1.52998 * 109.46831 * 98.26472 * 3 2 1 28 28 C 1.52999 * 117.50141 * 351.10790 * 27 3 2 29 29 C 1.53001 * 117.50071 * 59.73293 * 27 3 2 30 30 H 1.09001 * 109.47335 * 305.44480 * 1 2 3 31 31 H 1.09002 * 109.47662 * 65.44993 * 1 2 3 32 32 H 1.09006 * 109.46982 * 185.44751 * 1 2 3 33 33 H 1.09001 * 109.90674 * 300.83664 * 8 7 5 34 34 H 1.08999 * 109.90859 * 61.91360 * 8 7 5 35 35 H 1.08998 * 111.01084 * 83.24916 * 10 9 8 36 36 H 1.08998 * 111.01452 * 207.11884 * 10 9 8 37 37 H 1.09006 * 109.47208 * 58.55030 * 13 11 7 38 38 H 1.09004 * 109.47165 * 178.54575 * 13 11 7 39 39 H 1.09004 * 109.47372 * 298.54831 * 13 11 7 40 40 H 1.09004 * 109.47939 * 56.21573 * 14 9 8 41 41 H 1.08998 * 109.48454 * 176.24937 * 14 9 8 42 42 H 1.08997 * 109.59570 * 186.72313 * 15 14 9 43 43 H 1.09002 * 109.72323 * 66.33710 * 15 14 9 44 44 H 0.97005 * 120.00321 * 179.97438 * 20 19 17 45 45 H 1.08998 * 109.60198 * 185.99776 * 25 16 15 46 46 H 1.08996 * 109.72775 * 65.59543 * 25 16 15 47 47 H 1.09002 * 109.47802 * 183.73877 * 26 9 8 48 48 H 1.08991 * 109.48011 * 303.75822 * 26 9 8 49 49 H 1.09004 * 115.55831 * 205.42246 * 27 3 2 50 50 H 1.08998 * 117.49779 * 214.98251 * 28 27 3 51 51 H 1.09002 * 117.49556 * 0.02562 * 28 27 3 52 52 H 1.08993 * 117.50127 * 359.97438 * 29 27 3 53 53 H 1.09000 * 117.49415 * 144.99734 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.2858 2.0257 -0.3806 5 6 3.2336 1.3108 -0.8798 6 8 3.6267 0.2772 -1.3780 7 7 3.8910 2.4639 -1.1131 8 6 3.5255 3.7839 -0.5745 9 6 4.5347 4.7972 -1.1376 10 6 5.0906 4.0965 -2.3976 11 6 5.0997 2.6115 -1.9453 12 1 5.9926 2.3970 -1.3582 13 6 5.0253 1.6851 -3.1606 14 6 5.6558 5.0498 -0.1386 15 6 5.0761 5.6948 1.1257 16 7 4.3068 6.8847 0.7374 17 6 4.5765 8.1030 1.3016 18 1 5.5787 8.3361 1.6298 19 6 3.5619 9.0384 1.4515 20 7 2.3057 8.6770 1.2975 21 14 3.9794 10.8099 1.8721 22 1 4.1696 11.5844 0.6194 23 1 2.8704 11.4063 2.6593 24 1 5.2300 10.8472 2.6719 25 6 3.2433 6.7455 -0.2669 26 6 3.8350 6.0939 -1.5222 27 6 2.4068 1.6871 1.4275 28 6 1.9451 0.7667 2.5591 29 6 3.4175 0.7890 2.1438 30 1 -0.3634 0.5960 0.8372 31 1 -0.3634 0.4270 -0.9347 32 1 -0.3633 -1.0231 0.0976 33 1 2.5171 4.0484 -0.8929 34 1 3.5789 3.7684 0.5140 35 1 4.4290 4.2446 -3.2511 36 1 6.0999 4.4407 -2.6231 37 1 4.1355 1.9219 -3.7440 38 1 5.9125 1.8244 -3.7784 39 1 4.9750 0.6492 -2.8254 40 1 6.1311 4.1038 0.1211 41 1 6.3941 5.7180 -0.5818 42 1 5.8876 5.9857 1.7927 43 1 4.4219 4.9860 1.6335 44 1 1.5966 9.3306 1.4026 45 1 2.8465 7.7291 -0.5180 46 1 2.4440 6.1186 0.1281 47 1 4.5544 6.7732 -1.9797 48 1 3.0360 5.8791 -2.2316 49 1 2.4488 2.7566 1.6341 50 1 1.6832 1.2306 3.5100 51 1 1.3589 -0.1110 2.2865 52 1 3.7994 -0.0738 1.5983 53 1 4.1245 1.2678 2.8213 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086920255.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:16 Heat of formation + Delta-G solvation = -41.848068 kcal Electronic energy + Delta-G solvation = -32014.593805 eV Core-core repulsion = 28080.272930 eV Total energy + Delta-G solvation = -3934.320875 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.94091 -40.39390 -38.94066 -37.39845 -36.87155 -34.74090 -33.21487 -32.55739 -31.51333 -29.73636 -28.71125 -27.08189 -26.76979 -25.95023 -24.11837 -23.50073 -23.16415 -22.33669 -21.77057 -20.23473 -19.68227 -18.43746 -18.04951 -17.85343 -17.35021 -16.91208 -16.82331 -16.15371 -15.79890 -15.65080 -15.41633 -15.25666 -14.89149 -14.84286 -14.69450 -14.36456 -14.22243 -13.83841 -13.72183 -13.28847 -13.24170 -13.07871 -12.95953 -12.85195 -12.71372 -12.56404 -12.44103 -12.38532 -12.35527 -12.27035 -11.99949 -11.90766 -11.81630 -11.56081 -11.46027 -11.28984 -11.02866 -10.91522 -10.85382 -10.47197 -10.25796 -9.63742 -8.56435 -7.82001 -5.29642 1.48749 1.50657 1.51449 1.58148 1.73719 2.54075 2.69546 2.88163 3.31798 3.44369 3.53369 3.59709 3.74627 3.77007 3.84455 3.88644 4.08715 4.13878 4.21269 4.24188 4.30855 4.33798 4.46673 4.51933 4.53941 4.59161 4.62134 4.69563 4.74244 4.74708 4.80129 4.81680 4.82124 4.94480 4.95685 4.98536 5.09649 5.12000 5.17179 5.22233 5.25702 5.27859 5.33519 5.39172 5.44842 5.54338 5.60933 5.70793 5.86512 6.01959 6.46288 6.49396 7.14023 7.22218 7.93289 8.43695 9.22771 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013521 B = 0.003709 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.319183 B = 7548.378404 C = 8651.361108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.378 6.378 3 C 0.108 3.892 4 H 0.099 0.901 5 C 0.532 3.468 6 O -0.560 6.560 7 N -0.604 5.604 8 C 0.112 3.888 9 C -0.051 4.051 10 C -0.110 4.110 11 C 0.133 3.867 12 H 0.077 0.923 13 C -0.156 4.156 14 C -0.107 4.107 15 C 0.142 3.858 16 N -0.606 5.606 17 C -0.259 4.259 18 H 0.062 0.938 19 C -0.044 4.044 20 N -0.932 5.932 21 Si 0.960 3.040 22 H -0.287 1.287 23 H -0.297 1.297 24 H -0.271 1.271 25 C 0.178 3.822 26 C -0.113 4.113 27 C -0.188 4.188 28 C -0.147 4.147 29 C -0.170 4.170 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.048 0.952 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.048 0.952 43 H 0.017 0.983 44 H 0.249 0.751 45 H 0.051 0.949 46 H 0.003 0.997 47 H 0.057 0.943 48 H 0.068 0.932 49 H 0.118 0.882 50 H 0.109 0.891 51 H 0.104 0.896 52 H 0.079 0.921 53 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.143 -14.048 -4.799 14.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.296 6.296 3 C 0.047 3.953 4 H 0.117 0.883 5 C 0.321 3.679 6 O -0.439 6.439 7 N -0.339 5.339 8 C -0.010 4.010 9 C -0.052 4.052 10 C -0.148 4.148 11 C 0.031 3.969 12 H 0.095 0.905 13 C -0.213 4.213 14 C -0.146 4.146 15 C 0.017 3.983 16 N -0.330 5.330 17 C -0.390 4.390 18 H 0.080 0.920 19 C -0.240 4.240 20 N -0.578 5.578 21 Si 0.789 3.211 22 H -0.213 1.213 23 H -0.223 1.223 24 H -0.196 1.196 25 C 0.052 3.948 26 C -0.153 4.153 27 C -0.207 4.207 28 C -0.184 4.184 29 C -0.207 4.207 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.123 0.877 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.067 0.933 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.035 0.965 44 H 0.058 0.942 45 H 0.070 0.930 46 H 0.021 0.979 47 H 0.076 0.924 48 H 0.086 0.914 49 H 0.135 0.865 50 H 0.127 0.873 51 H 0.123 0.877 52 H 0.098 0.902 53 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.280 -14.753 -5.010 15.583 hybrid contribution -0.364 1.475 0.448 1.584 sum -0.084 -13.278 -4.562 14.040 Atomic orbital electron populations 1.23128 0.78888 1.04399 1.01123 1.87959 1.21660 1.25303 1.94716 1.21313 0.93580 0.86923 0.93529 0.88324 1.20296 0.84774 0.82106 0.80738 1.90611 1.68407 1.32495 1.52369 1.48594 1.28835 1.07160 1.49276 1.22238 0.98742 0.81027 0.98978 1.20829 0.94998 0.93799 0.95547 1.22953 1.03137 0.91912 0.96775 1.22096 0.87028 0.96085 0.91690 0.90512 1.22074 1.02249 1.00322 0.96675 1.21772 0.96713 1.00097 0.95972 1.21069 0.94096 0.88274 0.94863 1.44221 1.39864 1.04123 1.44774 1.19476 0.93046 0.92023 1.34436 0.92028 1.25720 0.95036 1.02375 1.00859 1.70121 0.98761 1.33779 1.55185 0.85378 0.77049 0.81079 0.77590 1.21343 1.22344 1.19634 1.20621 0.88811 0.98404 0.86945 1.21922 0.99568 0.95501 0.98288 1.22687 1.07809 0.98341 0.91839 1.22978 0.96784 1.01135 0.97491 1.22829 0.93298 1.01310 1.03275 0.92291 0.93420 0.87699 0.91539 0.90975 0.89967 0.88285 0.93333 0.89976 0.91986 0.91027 0.91832 0.93355 0.96484 0.94227 0.93033 0.97882 0.92443 0.91389 0.86450 0.87312 0.87737 0.90202 0.88047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.11 113.37 1.15 1.51 16 2 O -0.38 -9.87 8.48 -129.99 -1.10 -10.97 16 3 C 0.11 2.77 2.43 29.85 0.07 2.85 16 4 H 0.10 2.28 7.72 -2.39 -0.02 2.26 16 5 C 0.53 15.95 6.68 87.66 0.59 16.53 16 6 O -0.56 -20.17 14.16 15.95 0.23 -19.94 16 7 N -0.60 -16.28 3.25 -788.23 -2.56 -18.84 16 8 C 0.11 3.08 4.25 86.49 0.37 3.45 16 9 C -0.05 -1.40 0.53 -51.91 -0.03 -1.43 16 10 C -0.11 -2.43 5.42 31.88 0.17 -2.26 16 11 C 0.13 3.20 3.45 45.57 0.16 3.36 16 12 H 0.08 1.83 7.74 -2.39 -0.02 1.82 16 13 C -0.16 -3.68 8.71 71.98 0.63 -3.05 16 14 C -0.11 -3.13 4.78 30.46 0.15 -2.99 16 15 C 0.14 5.36 6.22 86.41 0.54 5.89 16 16 N -0.61 -28.08 2.98 -698.61 -2.08 -30.16 16 17 C -0.26 -13.58 9.58 84.03 0.80 -12.78 16 18 H 0.06 3.19 7.86 -2.91 -0.02 3.16 16 19 C -0.04 -2.37 5.00 84.86 0.42 -1.95 16 20 N -0.93 -52.60 11.08 21.65 0.24 -52.36 16 21 Si 0.96 43.44 29.57 68.60 2.03 45.47 16 22 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 C 0.18 7.76 5.01 86.40 0.43 8.19 16 26 C -0.11 -3.71 4.70 30.46 0.14 -3.57 16 27 C -0.19 -4.53 4.94 -10.79 -0.05 -4.58 16 28 C -0.15 -3.07 9.73 30.59 0.30 -2.78 16 29 C -0.17 -4.09 9.81 30.60 0.30 -3.79 16 30 H 0.06 0.90 8.01 -2.39 -0.02 0.88 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.07 1.84 7.59 -2.39 -0.02 1.82 16 34 H 0.07 2.12 4.09 -2.39 -0.01 2.11 16 35 H 0.08 1.74 7.93 -2.39 -0.02 1.73 16 36 H 0.10 1.90 8.01 -2.39 -0.02 1.88 16 37 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.06 1.79 5.89 -2.39 -0.01 1.78 16 40 H 0.07 1.85 7.47 -2.39 -0.02 1.83 16 41 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.05 1.84 7.93 -2.39 -0.02 1.82 16 43 H 0.02 0.65 6.54 -2.39 -0.02 0.64 16 44 H 0.25 13.70 8.31 -92.70 -0.77 12.93 16 45 H 0.05 2.64 6.04 -2.39 -0.01 2.63 16 46 H 0.00 0.14 7.47 -2.39 -0.02 0.12 16 47 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.07 1.98 8.10 -2.39 -0.02 1.97 16 49 H 0.12 2.95 6.53 -2.38 -0.02 2.93 16 50 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 51 H 0.10 2.13 6.54 -2.39 -0.02 2.12 16 52 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 53 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -64.52 395.25 3.77 -60.75 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.88 Total: 23.42 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 6.13 Total: 2.62 kcal Atomic # 7 Polarization: -96.96 SS G_CDS: -4.40 Total: -101.35 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.88 Total: -30.91 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -64.52 3.77 -60.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086920255.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.906 kcal (2) G-P(sol) polarization free energy of solvation -64.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds