Wall clock time and date at job start Tue Mar 31 2020 19:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99821 * 2 1 4 4 C 1.53777 * 113.61472 * 210.00273 * 3 2 1 5 5 C 1.53776 * 87.08059 * 220.01876 * 4 3 2 6 6 C 1.50705 * 113.61989 * 139.97931 * 5 4 3 7 7 O 1.21282 * 119.99314 * 1.53015 * 6 5 4 8 8 N 1.34771 * 120.00250 * 181.52776 * 6 5 4 9 9 C 1.47176 * 125.66397 * 0.04275 * 8 6 5 10 10 C 1.53682 * 107.12070 * 181.46897 * 9 8 6 11 11 C 1.54538 * 103.63345 * 21.54726 * 10 9 8 12 12 C 1.47482 * 125.66213 * 180.02562 * 8 6 5 13 13 H 1.09005 * 110.35572 * 274.86763 * 12 8 6 14 14 C 1.52997 * 110.35567 * 37.15274 * 12 8 6 15 15 C 1.52271 * 110.66727 * 263.47269 * 10 9 8 16 16 C 1.53302 * 109.46539 * 296.00449 * 15 10 9 17 17 N 1.46924 * 108.70436 * 306.49778 * 16 15 10 18 18 C 1.36943 * 120.58154 * 234.28839 * 17 16 15 19 19 H 1.08004 * 119.99553 * 152.47104 * 18 17 16 20 20 C 1.38811 * 120.00060 * 332.46917 * 18 17 16 21 21 N 1.31621 * 119.99567 * 159.32697 * 20 18 17 22 22 Si 1.86800 * 120.00011 * 339.33085 * 20 18 17 23 23 H 1.48501 * 109.47121 * 93.27660 * 22 20 18 24 24 H 1.48497 * 109.46750 * 213.27366 * 22 20 18 25 25 H 1.48498 * 109.47212 * 333.27312 * 22 20 18 26 26 C 1.46932 * 118.83746 * 54.31709 * 17 16 15 27 27 C 1.52280 * 110.66650 * 139.61933 * 10 9 8 28 28 C 1.53782 * 87.17637 * 25.38934 * 5 4 3 29 29 H 1.08999 * 109.46657 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47357 * 299.99539 * 1 2 3 31 31 H 1.09002 * 109.47144 * 60.00260 * 1 2 3 32 32 H 1.09004 * 112.90819 * 341.24976 * 3 2 1 33 33 H 1.08995 * 113.61869 * 105.46878 * 4 3 2 34 34 H 1.08999 * 113.61531 * 334.56312 * 4 3 2 35 35 H 1.09002 * 113.61617 * 270.79565 * 5 4 3 36 36 H 1.08997 * 109.90669 * 62.09849 * 9 8 6 37 37 H 1.08999 * 109.90833 * 300.84015 * 9 8 6 38 38 H 1.09001 * 111.01217 * 83.23204 * 11 10 9 39 39 H 1.09002 * 111.01357 * 207.06208 * 11 10 9 40 40 H 1.09006 * 109.47206 * 175.47163 * 14 12 8 41 41 H 1.09001 * 109.47550 * 295.47173 * 14 12 8 42 42 H 1.08999 * 109.47118 * 55.47554 * 14 12 8 43 43 H 1.09000 * 109.47519 * 176.00765 * 15 10 9 44 44 H 1.08994 * 109.47395 * 56.00179 * 15 10 9 45 45 H 1.09002 * 109.60085 * 66.26651 * 16 15 10 46 46 H 1.09002 * 109.59967 * 186.57106 * 16 15 10 47 47 H 0.97001 * 119.99535 * 179.97438 * 21 20 18 48 48 H 1.08996 * 109.60317 * 65.44813 * 26 17 16 49 49 H 1.09002 * 109.60086 * 185.76819 * 26 17 16 50 50 H 1.09002 * 109.46446 * 303.99811 * 27 10 9 51 51 H 1.08999 * 109.47564 * 183.99810 * 27 10 9 52 52 H 1.09001 * 113.61191 * 89.15583 * 28 5 4 53 53 H 1.08994 * 113.61484 * 220.06597 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3755 1.3720 -0.7046 5 6 3.8226 2.3182 0.4221 6 6 5.2327 2.0719 0.8935 7 8 5.9060 1.2108 0.3679 8 7 5.7456 2.8085 1.8988 9 6 5.0426 3.8799 2.6228 10 6 6.0302 4.4551 3.6502 11 6 7.4135 4.0552 3.0893 12 6 7.1043 2.6745 2.4565 13 1 7.1264 1.8951 3.2182 14 6 8.1076 2.3620 1.3445 15 6 5.8144 3.8199 5.0172 16 6 4.4191 4.1860 5.5361 17 7 4.2703 5.6472 5.4972 18 6 3.9087 6.3408 6.6212 19 1 4.2147 7.3695 6.7426 20 6 3.1490 5.7219 7.6043 21 7 3.1374 6.2051 8.8286 22 14 2.1431 4.2035 7.1898 23 1 2.9398 2.9858 7.4863 24 1 0.9023 4.1939 8.0056 25 1 1.7875 4.2236 5.7482 26 6 4.5157 6.3510 4.2310 27 6 5.9105 5.9716 3.7201 28 6 2.7533 1.6512 1.3033 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.3142 2.0798 -0.3227 33 1 3.3384 1.8472 -1.6848 34 1 3.9089 0.4215 -0.7138 35 1 3.6235 3.3695 0.2143 36 1 4.1707 3.4721 3.1341 37 1 4.7362 4.6597 1.9256 38 1 7.7488 4.7651 2.3331 39 1 8.1481 3.9638 3.8894 40 1 9.1157 2.3455 1.7587 41 1 7.8773 1.3891 0.9103 42 1 8.0446 3.1286 0.5723 43 1 6.5687 4.1883 5.7123 44 1 5.8974 2.7365 4.9316 45 1 3.6609 3.7243 4.9035 46 1 4.3054 3.8317 6.5606 47 1 2.6062 5.7728 9.5156 48 1 3.7651 6.0567 3.4975 49 1 4.4642 7.4274 4.3950 50 1 6.0609 6.3940 2.7266 51 1 6.6660 6.3648 4.4003 52 1 3.1162 0.7770 1.8440 53 1 2.2145 2.3514 1.9416 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086927425.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:03 Heat of formation + Delta-G solvation = -32.514709 kcal Electronic energy + Delta-G solvation = -31521.593692 eV Core-core repulsion = 27587.677541 eV Total energy + Delta-G solvation = -3933.916151 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.96066 -39.68774 -38.22628 -36.37835 -35.78159 -33.19084 -31.94975 -31.15852 -30.58202 -27.62960 -27.37731 -26.08384 -25.89037 -25.36113 -24.10897 -22.96404 -22.11632 -21.01147 -20.03168 -19.15676 -18.37173 -17.44084 -16.89021 -16.32937 -16.09650 -15.95705 -15.38337 -15.31373 -14.76054 -14.63955 -14.28641 -13.93998 -13.82018 -13.78235 -13.55500 -13.23551 -12.94796 -12.67962 -12.59914 -12.37633 -12.20239 -12.16085 -12.02228 -11.94574 -11.79786 -11.69776 -11.40721 -11.17596 -11.08491 -10.97774 -10.89356 -10.87985 -10.61978 -10.52746 -10.13190 -9.87470 -9.74097 -9.63797 -9.46798 -9.43933 -8.66528 -8.57523 -7.01095 -5.99249 -3.35031 2.60456 2.93119 3.27581 3.43426 3.45475 3.60152 4.22306 4.32864 4.44702 4.48272 4.52567 4.55715 4.62578 4.83826 4.88269 4.93084 5.02789 5.12845 5.14296 5.17034 5.27571 5.31417 5.37446 5.40383 5.48957 5.51714 5.57015 5.60830 5.68242 5.73135 5.76708 5.79130 5.82200 5.83730 5.91032 5.99277 6.01180 6.11125 6.15521 6.19440 6.29278 6.39144 6.42295 6.51024 6.59964 6.62214 6.63510 6.88479 6.99186 7.56934 7.92225 8.19766 8.28902 8.89998 9.67950 10.05356 11.16867 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009915 B = 0.004291 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.442527 B = 6524.259346 C = 8623.785929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.375 6.375 3 C 0.062 3.938 4 C -0.111 4.111 5 C -0.134 4.134 6 C 0.543 3.457 7 O -0.542 6.542 8 N -0.610 5.610 9 C 0.108 3.892 10 C -0.057 4.057 11 C -0.122 4.122 12 C 0.134 3.866 13 H 0.074 0.926 14 C -0.160 4.160 15 C -0.121 4.121 16 C 0.126 3.874 17 N -0.604 5.604 18 C -0.260 4.260 19 H 0.085 0.915 20 C 0.025 3.975 21 N -0.908 5.908 22 Si 0.881 3.119 23 H -0.289 1.289 24 H -0.303 1.303 25 H -0.271 1.271 26 C 0.147 3.853 27 C -0.119 4.119 28 C -0.139 4.139 29 H 0.084 0.916 30 H 0.043 0.957 31 H 0.041 0.959 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.052 0.948 43 H 0.070 0.930 44 H 0.054 0.946 45 H 0.024 0.976 46 H 0.073 0.927 47 H 0.263 0.737 48 H 0.021 0.979 49 H 0.064 0.936 50 H 0.056 0.944 51 H 0.069 0.931 52 H 0.094 0.906 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.872 -7.165 -18.179 19.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.293 6.293 3 C 0.004 3.996 4 C -0.149 4.149 5 C -0.155 4.155 6 C 0.332 3.668 7 O -0.420 6.420 8 N -0.344 5.344 9 C -0.015 4.015 10 C -0.057 4.057 11 C -0.160 4.160 12 C 0.031 3.969 13 H 0.092 0.908 14 C -0.217 4.217 15 C -0.160 4.160 16 C 0.001 3.999 17 N -0.328 5.328 18 C -0.388 4.388 19 H 0.103 0.897 20 C -0.174 4.174 21 N -0.551 5.551 22 Si 0.711 3.289 23 H -0.217 1.217 24 H -0.232 1.232 25 H -0.196 1.196 26 C 0.021 3.979 27 C -0.159 4.159 28 C -0.177 4.177 29 H 0.103 0.897 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.123 0.877 35 H 0.131 0.869 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.042 0.958 46 H 0.091 0.909 47 H 0.072 0.928 48 H 0.039 0.961 49 H 0.083 0.917 50 H 0.075 0.925 51 H 0.088 0.912 52 H 0.113 0.887 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.221 -7.816 -18.341 20.060 hybrid contribution -0.902 -0.485 0.105 1.030 sum 1.319 -8.302 -18.236 20.080 Atomic orbital electron populations 1.22806 0.81211 1.02767 1.00018 1.87970 1.19621 1.27216 1.94524 1.23731 0.94018 0.85401 0.96453 1.23099 0.94393 1.00581 0.96803 1.22462 0.92267 1.01378 0.99421 1.19884 0.88023 0.80444 0.78434 1.90626 1.61138 1.33356 1.56845 1.48672 1.14866 1.36225 1.34633 1.22249 0.96045 0.89219 0.93950 1.20942 0.93359 0.96654 0.94767 1.22957 0.97402 0.95390 1.00254 1.21929 0.81851 0.97740 0.95388 0.90841 1.22117 0.97704 1.03867 0.98024 1.21934 1.00598 0.98607 0.94851 1.21364 0.93236 0.85527 0.99811 1.44327 1.80094 1.01382 1.06959 1.18925 1.27447 0.98278 0.94189 0.89696 1.25270 0.98617 0.97945 0.95608 1.69838 1.42238 1.42222 1.00778 0.86980 0.80332 0.83356 0.78191 1.21689 1.23168 1.19626 1.20964 0.92475 0.96823 0.87603 1.21922 1.00721 0.92839 1.00372 1.23463 0.95899 1.01089 0.97259 0.89722 0.93854 0.94030 0.89126 0.90531 0.87744 0.86852 0.90699 0.91373 0.90701 0.89868 0.92294 0.89981 0.92883 0.91105 0.92772 0.95829 0.90929 0.92758 0.96105 0.91749 0.92491 0.91241 0.88746 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.85 101.05 1.10 1.33 16 2 O -0.37 -4.31 10.72 -35.23 -0.38 -4.69 16 3 C 0.06 0.63 4.31 -25.83 -0.11 0.52 16 4 C -0.11 -1.18 7.23 -25.92 -0.19 -1.37 16 5 C -0.13 -1.48 3.34 -90.96 -0.30 -1.79 16 6 C 0.54 7.49 7.16 -10.99 -0.08 7.42 16 7 O -0.54 -8.85 13.64 5.56 0.08 -8.77 16 8 N -0.61 -8.05 3.25 -163.23 -0.53 -8.59 16 9 C 0.11 1.42 4.68 -3.32 -0.02 1.40 16 10 C -0.06 -0.78 0.53 -154.09 -0.08 -0.86 16 11 C -0.12 -1.43 5.41 -24.87 -0.13 -1.56 16 12 C 0.13 1.68 3.44 -66.34 -0.23 1.45 16 13 H 0.07 0.96 7.76 -51.93 -0.40 0.56 16 14 C -0.16 -1.91 8.60 37.16 0.32 -1.59 16 15 C -0.12 -1.97 4.77 -26.95 -0.13 -2.10 16 16 C 0.13 2.57 3.91 -3.65 -0.01 2.56 16 17 N -0.60 -13.36 2.76 -172.17 -0.47 -13.83 16 18 C -0.26 -6.97 10.03 -15.06 -0.15 -7.12 16 19 H 0.09 2.44 8.06 -52.48 -0.42 2.01 16 20 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 21 N -0.91 -27.28 13.97 55.49 0.78 -26.50 16 22 Si 0.88 21.78 24.36 -169.99 -4.14 17.64 16 23 H -0.29 -6.96 6.63 56.52 0.37 -6.58 16 24 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 25 H -0.27 -6.48 6.64 56.52 0.38 -6.11 16 26 C 0.15 2.61 6.24 -3.65 -0.02 2.59 16 27 C -0.12 -1.71 4.70 -26.94 -0.13 -1.83 16 28 C -0.14 -1.56 7.48 -25.83 -0.19 -1.75 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.09 0.74 7.87 -51.93 -0.41 0.33 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 1.33 7.45 -51.93 -0.39 0.94 16 35 H 0.11 1.06 8.12 -51.93 -0.42 0.64 16 36 H 0.07 1.08 6.09 -51.93 -0.32 0.77 16 37 H 0.07 0.82 7.60 -51.93 -0.39 0.43 16 38 H 0.07 0.82 7.92 -51.93 -0.41 0.41 16 39 H 0.08 0.92 8.01 -51.93 -0.42 0.51 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.08 1.15 6.09 -51.93 -0.32 0.83 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.05 0.82 7.49 -51.93 -0.39 0.43 16 45 H 0.02 0.48 5.52 -51.93 -0.29 0.19 16 46 H 0.07 1.67 4.46 -51.93 -0.23 1.44 16 47 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 48 H 0.02 0.35 7.49 -51.93 -0.39 -0.04 16 49 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 50 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 51 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 52 H 0.09 1.21 8.09 -51.93 -0.42 0.79 16 53 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 392.61 15.07 5.92 5.92 Total: -1.00 -31.40 392.61 -8.65 -40.04 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -9.44 Total: 0.90 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -0.45 Total: -2.12 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.23 Total: -48.92 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.30 Total: -13.46 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.14 Total: 17.64 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.40 -8.65 -40.04 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086927425.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.529 kcal (2) G-P(sol) polarization free energy of solvation -31.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds