Wall clock time and date at job start Tue Mar 31 2020 19:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99821 * 2 1 4 4 C 1.53777 * 113.61472 * 210.00273 * 3 2 1 5 5 C 1.53776 * 87.08059 * 220.01876 * 4 3 2 6 6 C 1.50705 * 113.61989 * 139.97931 * 5 4 3 7 7 O 1.21282 * 119.99314 * 1.53015 * 6 5 4 8 8 N 1.34771 * 120.00250 * 181.52776 * 6 5 4 9 9 C 1.47176 * 125.66397 * 0.04275 * 8 6 5 10 10 C 1.53682 * 107.12070 * 181.46897 * 9 8 6 11 11 C 1.54538 * 103.63345 * 21.54726 * 10 9 8 12 12 C 1.47482 * 125.66213 * 180.02562 * 8 6 5 13 13 H 1.09005 * 110.35572 * 274.86763 * 12 8 6 14 14 C 1.52997 * 110.35567 * 37.15274 * 12 8 6 15 15 C 1.52271 * 110.66727 * 263.47269 * 10 9 8 16 16 C 1.53302 * 109.46539 * 296.00449 * 15 10 9 17 17 N 1.46924 * 108.70436 * 306.49778 * 16 15 10 18 18 C 1.36943 * 120.58154 * 234.28839 * 17 16 15 19 19 H 1.08004 * 119.99553 * 152.47104 * 18 17 16 20 20 C 1.38811 * 120.00060 * 332.46917 * 18 17 16 21 21 N 1.31621 * 119.99567 * 159.32697 * 20 18 17 22 22 Si 1.86800 * 120.00011 * 339.33085 * 20 18 17 23 23 H 1.48501 * 109.47121 * 93.27660 * 22 20 18 24 24 H 1.48497 * 109.46750 * 213.27366 * 22 20 18 25 25 H 1.48498 * 109.47212 * 333.27312 * 22 20 18 26 26 C 1.46932 * 118.83746 * 54.31709 * 17 16 15 27 27 C 1.52280 * 110.66650 * 139.61933 * 10 9 8 28 28 C 1.53782 * 87.17637 * 25.38934 * 5 4 3 29 29 H 1.08999 * 109.46657 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47357 * 299.99539 * 1 2 3 31 31 H 1.09002 * 109.47144 * 60.00260 * 1 2 3 32 32 H 1.09004 * 112.90819 * 341.24976 * 3 2 1 33 33 H 1.08995 * 113.61869 * 105.46878 * 4 3 2 34 34 H 1.08999 * 113.61531 * 334.56312 * 4 3 2 35 35 H 1.09002 * 113.61617 * 270.79565 * 5 4 3 36 36 H 1.08997 * 109.90669 * 62.09849 * 9 8 6 37 37 H 1.08999 * 109.90833 * 300.84015 * 9 8 6 38 38 H 1.09001 * 111.01217 * 83.23204 * 11 10 9 39 39 H 1.09002 * 111.01357 * 207.06208 * 11 10 9 40 40 H 1.09006 * 109.47206 * 175.47163 * 14 12 8 41 41 H 1.09001 * 109.47550 * 295.47173 * 14 12 8 42 42 H 1.08999 * 109.47118 * 55.47554 * 14 12 8 43 43 H 1.09000 * 109.47519 * 176.00765 * 15 10 9 44 44 H 1.08994 * 109.47395 * 56.00179 * 15 10 9 45 45 H 1.09002 * 109.60085 * 66.26651 * 16 15 10 46 46 H 1.09002 * 109.59967 * 186.57106 * 16 15 10 47 47 H 0.97001 * 119.99535 * 179.97438 * 21 20 18 48 48 H 1.08996 * 109.60317 * 65.44813 * 26 17 16 49 49 H 1.09002 * 109.60086 * 185.76819 * 26 17 16 50 50 H 1.09002 * 109.46446 * 303.99811 * 27 10 9 51 51 H 1.08999 * 109.47564 * 183.99810 * 27 10 9 52 52 H 1.09001 * 113.61191 * 89.15583 * 28 5 4 53 53 H 1.08994 * 113.61484 * 220.06597 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3755 1.3720 -0.7046 5 6 3.8226 2.3182 0.4221 6 6 5.2327 2.0719 0.8935 7 8 5.9060 1.2108 0.3679 8 7 5.7456 2.8085 1.8988 9 6 5.0426 3.8799 2.6228 10 6 6.0302 4.4551 3.6502 11 6 7.4135 4.0552 3.0893 12 6 7.1043 2.6745 2.4565 13 1 7.1264 1.8951 3.2182 14 6 8.1076 2.3620 1.3445 15 6 5.8144 3.8199 5.0172 16 6 4.4191 4.1860 5.5361 17 7 4.2703 5.6472 5.4972 18 6 3.9087 6.3408 6.6212 19 1 4.2147 7.3695 6.7426 20 6 3.1490 5.7219 7.6043 21 7 3.1374 6.2051 8.8286 22 14 2.1431 4.2035 7.1898 23 1 2.9398 2.9858 7.4863 24 1 0.9023 4.1939 8.0056 25 1 1.7875 4.2236 5.7482 26 6 4.5157 6.3510 4.2310 27 6 5.9105 5.9716 3.7201 28 6 2.7533 1.6512 1.3033 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.3142 2.0798 -0.3227 33 1 3.3384 1.8472 -1.6848 34 1 3.9089 0.4215 -0.7138 35 1 3.6235 3.3695 0.2143 36 1 4.1707 3.4721 3.1341 37 1 4.7362 4.6597 1.9256 38 1 7.7488 4.7651 2.3331 39 1 8.1481 3.9638 3.8894 40 1 9.1157 2.3455 1.7587 41 1 7.8773 1.3891 0.9103 42 1 8.0446 3.1286 0.5723 43 1 6.5687 4.1883 5.7123 44 1 5.8974 2.7365 4.9316 45 1 3.6609 3.7243 4.9035 46 1 4.3054 3.8317 6.5606 47 1 2.6062 5.7728 9.5156 48 1 3.7651 6.0567 3.4975 49 1 4.4642 7.4274 4.3950 50 1 6.0609 6.3940 2.7266 51 1 6.6660 6.3648 4.4003 52 1 3.1162 0.7770 1.8440 53 1 2.2145 2.3514 1.9416 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086927425.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:01 Heat of formation + Delta-G solvation = -52.083535 kcal Electronic energy + Delta-G solvation = -31522.442260 eV Core-core repulsion = 27587.677541 eV Total energy + Delta-G solvation = -3934.764719 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.99160 -40.68429 -39.27961 -37.66190 -36.72001 -34.79588 -33.15467 -32.72468 -32.00262 -28.94541 -28.19302 -27.00817 -26.73153 -26.32610 -25.67046 -24.40043 -23.34465 -22.28943 -20.92311 -20.25564 -19.61437 -18.57143 -18.35453 -17.42865 -17.26492 -16.96902 -16.79573 -16.06199 -15.99026 -15.67389 -15.56135 -15.34421 -15.19567 -14.91268 -14.77893 -14.40114 -14.15326 -14.11207 -13.73788 -13.54583 -13.51601 -13.19855 -13.11324 -13.08278 -12.84196 -12.71200 -12.55877 -12.38948 -12.20866 -12.17895 -12.07874 -12.00840 -11.87320 -11.70896 -11.62126 -11.53376 -11.13967 -11.00989 -10.63360 -10.57376 -10.40789 -9.63460 -8.86463 -8.14652 -5.44630 1.29928 1.40200 1.48715 1.57932 1.95685 2.42672 2.87028 3.08042 3.37164 3.38914 3.45067 3.50580 3.54515 3.72823 3.76493 3.84355 4.00832 4.10112 4.12379 4.28787 4.30062 4.37047 4.45598 4.48095 4.51711 4.56299 4.59379 4.67634 4.70940 4.71770 4.74179 4.75772 4.81399 4.84501 4.85985 4.92518 4.99328 5.02529 5.04619 5.13059 5.18097 5.20247 5.22823 5.27549 5.30515 5.34982 5.53205 5.57552 5.90956 6.16219 6.29225 6.54708 6.96258 7.16937 7.67076 8.07040 9.05578 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009915 B = 0.004291 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.442527 B = 6524.259346 C = 8623.785929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.403 6.403 3 C 0.068 3.932 4 C -0.111 4.111 5 C -0.128 4.128 6 C 0.537 3.463 7 O -0.573 6.573 8 N -0.609 5.609 9 C 0.111 3.889 10 C -0.055 4.055 11 C -0.108 4.108 12 C 0.128 3.872 13 H 0.065 0.935 14 C -0.150 4.150 15 C -0.111 4.111 16 C 0.123 3.877 17 N -0.617 5.617 18 C -0.242 4.242 19 H 0.054 0.946 20 C -0.034 4.034 21 N -0.959 5.959 22 Si 0.940 3.060 23 H -0.283 1.283 24 H -0.315 1.315 25 H -0.254 1.254 26 C 0.141 3.859 27 C -0.107 4.107 28 C -0.141 4.141 29 H 0.092 0.908 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.118 0.882 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.140 0.860 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.041 0.959 47 H 0.259 0.741 48 H 0.041 0.959 49 H 0.055 0.945 50 H 0.092 0.908 51 H 0.059 0.941 52 H 0.070 0.930 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.908 -7.132 -21.059 22.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.322 6.322 3 C 0.010 3.990 4 C -0.149 4.149 5 C -0.149 4.149 6 C 0.327 3.673 7 O -0.454 6.454 8 N -0.342 5.342 9 C -0.011 4.011 10 C -0.055 4.055 11 C -0.146 4.146 12 C 0.025 3.975 13 H 0.083 0.917 14 C -0.208 4.208 15 C -0.150 4.150 16 C -0.002 4.002 17 N -0.341 5.341 18 C -0.372 4.372 19 H 0.072 0.928 20 C -0.229 4.229 21 N -0.606 5.606 22 Si 0.770 3.230 23 H -0.210 1.210 24 H -0.244 1.244 25 H -0.178 1.178 26 C 0.016 3.984 27 C -0.146 4.146 28 C -0.180 4.180 29 H 0.110 0.890 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.136 0.864 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.158 0.842 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.051 0.949 46 H 0.060 0.940 47 H 0.068 0.932 48 H 0.059 0.941 49 H 0.074 0.926 50 H 0.110 0.890 51 H 0.078 0.922 52 H 0.088 0.912 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.273 -7.790 -21.272 22.768 hybrid contribution -0.850 -0.470 0.982 1.381 sum 1.423 -8.261 -20.290 21.953 Atomic orbital electron populations 1.22984 0.79669 1.03714 1.00977 1.87939 1.21458 1.28188 1.94591 1.23809 0.94178 0.85686 0.95335 1.23046 0.94553 0.99408 0.97906 1.22549 0.90313 1.02825 0.99241 1.20390 0.88854 0.79879 0.78195 1.90623 1.62194 1.34613 1.57924 1.48726 1.15085 1.36086 1.34334 1.22211 0.95251 0.89562 0.94077 1.20860 0.95187 0.96092 0.93392 1.22884 0.96118 0.94897 1.00693 1.22013 0.81906 0.98129 0.95441 0.91719 1.22004 0.98548 1.02454 0.97760 1.21792 0.97501 0.99530 0.96223 1.21367 0.95995 0.84384 0.98447 1.44452 1.80208 1.02175 1.07313 1.18896 1.25641 0.97222 0.95420 0.92848 1.25854 1.00285 1.01295 0.95451 1.69970 1.44070 1.44625 1.01932 0.86006 0.78156 0.80380 0.78463 1.21016 1.24426 1.17801 1.21196 0.95143 0.96067 0.85980 1.21800 0.97867 0.93149 1.01814 1.23430 0.96337 1.00384 0.97815 0.88972 0.93544 0.92326 0.86393 0.88538 0.90550 0.84220 0.91838 0.89198 0.88939 0.89034 0.90419 0.92349 0.92793 0.92105 0.91644 0.94853 0.94038 0.93159 0.94069 0.92620 0.88951 0.92216 0.91175 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.85 113.37 1.23 1.56 16 2 O -0.40 -8.69 10.72 -148.98 -1.60 -10.29 16 3 C 0.07 1.21 4.31 31.18 0.13 1.34 16 4 C -0.11 -2.16 7.23 31.12 0.22 -1.94 16 5 C -0.13 -2.51 3.34 -11.01 -0.04 -2.54 16 6 C 0.54 13.82 7.16 87.66 0.63 14.45 16 7 O -0.57 -18.39 13.64 -3.04 -0.04 -18.43 16 8 N -0.61 -14.43 3.25 -788.72 -2.56 -16.99 16 9 C 0.11 2.51 4.68 86.48 0.40 2.91 16 10 C -0.05 -1.31 0.53 -51.91 -0.03 -1.34 16 11 C -0.11 -2.12 5.41 31.80 0.17 -1.95 16 12 C 0.13 2.88 3.44 45.48 0.16 3.03 16 13 H 0.06 1.58 7.76 -2.38 -0.02 1.56 16 14 C -0.15 -3.26 8.60 71.98 0.62 -2.64 16 15 C -0.11 -3.41 4.77 30.45 0.15 -3.26 16 16 C 0.12 4.82 3.91 86.40 0.34 5.16 16 17 N -0.62 -26.59 2.76 -698.63 -1.92 -28.52 16 18 C -0.24 -13.14 10.03 84.03 0.84 -12.29 16 19 H 0.05 3.18 8.06 -2.91 -0.02 3.15 16 20 C -0.03 -1.96 5.23 84.86 0.44 -1.52 16 21 N -0.96 -59.62 13.97 21.65 0.30 -59.31 16 22 Si 0.94 45.53 24.36 68.60 1.67 47.20 16 23 H -0.28 -13.24 6.63 99.48 0.66 -12.58 16 24 H -0.31 -15.71 7.11 99.48 0.71 -15.00 16 25 H -0.25 -11.40 6.64 99.48 0.66 -10.74 16 26 C 0.14 4.61 6.24 86.40 0.54 5.15 16 27 C -0.11 -2.68 4.70 30.46 0.14 -2.53 16 28 C -0.14 -2.90 7.48 31.18 0.23 -2.66 16 29 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.12 1.46 7.87 -2.39 -0.02 1.44 16 33 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 1.94 7.45 -2.39 -0.02 1.92 16 35 H 0.14 1.99 8.12 -2.39 -0.02 1.97 16 36 H 0.06 1.61 6.09 -2.39 -0.01 1.60 16 37 H 0.09 1.68 7.60 -2.39 -0.02 1.67 16 38 H 0.09 1.57 7.92 -2.39 -0.02 1.55 16 39 H 0.09 1.69 8.01 -2.39 -0.02 1.68 16 40 H 0.08 1.36 8.14 -2.38 -0.02 1.35 16 41 H 0.06 1.58 6.09 -2.39 -0.01 1.56 16 42 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 43 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.06 1.86 7.49 -2.39 -0.02 1.84 16 45 H 0.03 1.26 5.52 -2.39 -0.01 1.25 16 46 H 0.04 1.89 4.46 -2.39 -0.01 1.88 16 47 H 0.26 15.43 8.31 -92.71 -0.77 14.65 16 48 H 0.04 1.22 7.49 -2.39 -0.02 1.20 16 49 H 0.06 1.91 7.93 -2.39 -0.02 1.89 16 50 H 0.09 1.73 8.10 -2.39 -0.02 1.71 16 51 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 52 H 0.07 1.77 8.09 -2.39 -0.02 1.75 16 53 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -70.81 392.61 2.82 -67.99 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.78 Total: 17.43 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: 6.19 Total: 0.91 kcal Atomic # 7 Polarization: -100.64 SS G_CDS: -4.18 Total: -104.82 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -1.64 Total: -28.71 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.67 Total: 47.20 kcal Total: -70.81 2.82 -67.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086927425.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.910 kcal (2) G-P(sol) polarization free energy of solvation -70.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds