Wall clock time and date at job start Tue Mar 31 2020 21:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.54319 * 2 1 4 4 C 1.55134 * 110.52599 * 237.21653 * 2 1 3 5 5 C 1.55002 * 102.09477 * 220.39607 * 4 2 1 6 6 O 1.44378 * 103.48706 * 37.10869 * 5 4 2 7 7 C 1.43746 * 106.97365 * 319.93434 * 6 5 4 8 8 H 1.08999 * 109.87986 * 266.93725 * 7 6 5 9 9 C 1.50705 * 109.87692 * 145.94263 * 7 6 5 10 10 O 1.21285 * 119.99875 * 344.39897 * 9 7 6 11 11 N 1.34772 * 120.00279 * 164.40124 * 9 7 6 12 12 C 1.47573 * 125.62508 * 355.25015 * 11 9 7 13 13 C 1.54130 * 104.78329 * 156.68232 * 12 11 9 14 14 C 1.54390 * 102.47281 * 36.08026 * 13 12 11 15 15 C 1.47082 * 125.63387 * 175.25704 * 11 9 7 16 16 H 1.09005 * 109.99503 * 300.47817 * 15 11 9 17 17 C 1.53001 * 109.87974 * 61.55634 * 15 11 9 18 18 C 1.52099 * 110.70097 * 153.94030 * 13 12 11 19 19 C 1.53343 * 109.44687 * 183.05903 * 18 13 12 20 20 N 1.46931 * 108.68730 * 306.69966 * 19 18 13 21 21 C 1.36934 * 120.55741 * 234.37042 * 20 19 18 22 22 H 1.08004 * 120.00013 * 143.99564 * 21 20 19 23 23 C 1.38811 * 120.00253 * 324.00779 * 21 20 19 24 24 N 1.31617 * 120.00294 * 169.98197 * 23 21 20 25 25 Si 1.86799 * 119.99958 * 349.97381 * 23 21 20 26 26 H 1.48501 * 109.46919 * 85.69484 * 25 23 21 27 27 H 1.48494 * 109.47397 * 205.69516 * 25 23 21 28 28 H 1.48503 * 109.47014 * 325.69896 * 25 23 21 29 29 C 1.46933 * 118.88692 * 54.35556 * 20 19 18 30 30 C 1.52107 * 110.68459 * 278.23299 * 13 12 11 31 31 H 1.08994 * 109.46880 * 301.93897 * 1 2 3 32 32 H 1.08999 * 109.47345 * 61.94564 * 1 2 3 33 33 H 1.09000 * 109.47069 * 181.94096 * 1 2 3 34 34 H 1.08995 * 110.83829 * 102.22839 * 4 2 1 35 35 H 1.09002 * 110.97696 * 338.62247 * 4 2 1 36 36 H 1.08995 * 110.61662 * 278.60224 * 5 4 2 37 37 H 1.09004 * 110.61736 * 155.60455 * 5 4 2 38 38 H 1.08997 * 110.37590 * 37.86044 * 12 11 9 39 39 H 1.08998 * 110.38330 * 275.50829 * 12 11 9 40 40 H 1.09002 * 110.73547 * 207.00817 * 14 13 12 41 41 H 1.09003 * 110.73219 * 83.70049 * 14 13 12 42 42 H 1.09004 * 109.46758 * 177.84209 * 17 15 11 43 43 H 1.08991 * 109.46978 * 57.83743 * 17 15 11 44 44 H 1.09004 * 109.46876 * 297.83633 * 17 15 11 45 45 H 1.09006 * 109.47423 * 303.05105 * 18 13 12 46 46 H 1.08994 * 109.47839 * 63.06300 * 18 13 12 47 47 H 1.08999 * 109.59963 * 186.94437 * 19 18 13 48 48 H 1.08997 * 109.73316 * 66.54288 * 19 18 13 49 49 H 0.96993 * 120.00540 * 179.97438 * 24 23 21 50 50 H 1.09001 * 109.59944 * 185.87762 * 29 20 19 51 51 H 1.09001 * 109.73662 * 65.48430 * 29 20 19 52 52 H 1.08998 * 109.47709 * 296.91686 * 30 13 12 53 53 H 1.08997 * 109.48115 * 56.93161 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0739 -0.7867 -1.2214 5 6 3.2688 -1.5580 -0.6051 6 8 2.7977 -1.9109 0.7133 7 6 2.0694 -0.7780 1.2158 8 1 2.7330 -0.1401 1.7996 9 6 0.9227 -1.2459 2.0746 10 8 0.5606 -2.4024 2.0250 11 7 0.2997 -0.3794 2.8975 12 6 0.6972 1.0226 3.1299 13 6 -0.5869 1.7193 3.6210 14 6 -1.2595 0.6190 4.4698 15 6 -0.8886 -0.6749 3.7123 16 1 -1.7153 -0.9780 3.0697 17 6 -0.5706 -1.7895 4.7110 18 6 -0.2481 2.9255 4.4834 19 6 -1.5422 3.5505 5.0181 20 7 -2.4376 3.8209 3.8850 21 6 -2.9493 5.0753 3.6859 22 1 -3.0857 5.4499 2.6821 23 6 -3.2926 5.8657 4.7742 24 7 -3.5960 7.1341 4.5968 25 14 -3.3241 5.1291 6.4905 26 1 -1.9617 5.1858 7.0786 27 1 -4.2638 5.9005 7.3432 28 1 -3.7718 3.7152 6.4142 29 6 -2.7746 2.7227 2.9688 30 6 -1.4734 2.1024 2.4458 31 1 -0.3633 0.5436 0.8721 32 1 -0.3634 0.4833 -0.9069 33 1 -0.3633 -1.0271 0.0348 34 1 2.4119 -0.1053 -2.0022 35 1 1.3231 -1.4764 -1.6072 36 1 4.1473 -0.9162 -0.5398 37 1 3.4886 -2.4534 -1.1865 38 1 1.0446 1.4774 2.2022 39 1 1.4734 1.0756 3.8933 40 1 -2.3406 0.7562 4.4931 41 1 -0.8493 0.6059 5.4797 42 1 -1.4434 -1.9766 5.3367 43 1 0.2680 -1.4871 5.3381 44 1 -0.3100 -2.6990 4.1696 45 1 0.3760 2.6104 5.3198 46 1 0.2902 3.6604 3.8850 47 1 -1.3122 4.4833 5.5330 48 1 -2.0257 2.8607 5.7098 49 1 -3.8363 7.6863 5.3572 50 1 -3.3571 3.1097 2.1328 51 1 -3.3534 1.9659 3.4984 52 1 -0.9527 2.8257 1.8184 53 1 -1.7046 1.2129 1.8598 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086944221.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:24 Heat of formation + Delta-G solvation = -73.061669 kcal Electronic energy + Delta-G solvation = -32220.992694 eV Core-core repulsion = 28285.318295 eV Total energy + Delta-G solvation = -3935.674399 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.19811 -40.74984 -39.16967 -37.58148 -34.91299 -34.68676 -33.01560 -32.94534 -31.97828 -30.70542 -28.83458 -27.90172 -27.17197 -25.63092 -24.46843 -24.18346 -22.85938 -22.69719 -21.73380 -19.88801 -19.75269 -18.56199 -18.14753 -17.70520 -17.44125 -17.10134 -16.59129 -15.97478 -15.78623 -15.70568 -15.38593 -15.17109 -15.09226 -14.93491 -14.67980 -14.39322 -14.19782 -14.12558 -13.75204 -13.62293 -13.56273 -13.42397 -13.25471 -13.08042 -12.95203 -12.58105 -12.40566 -12.25916 -12.23073 -12.13706 -12.03380 -11.95446 -11.84717 -11.69620 -11.56397 -11.46619 -11.15845 -11.06697 -11.03213 -10.63509 -10.41606 -9.65295 -8.71624 -8.12734 -5.55818 1.32499 1.44052 1.52635 1.52977 1.77365 2.44377 2.96135 3.17157 3.29083 3.35681 3.44468 3.47271 3.71058 3.73476 3.81261 4.00752 4.12016 4.15110 4.22018 4.26075 4.27004 4.40090 4.42849 4.43776 4.52371 4.57523 4.59507 4.65043 4.70743 4.72730 4.78536 4.82351 4.83077 4.87194 4.91132 4.93686 5.01769 5.04865 5.08627 5.12723 5.19608 5.22653 5.25314 5.30924 5.33283 5.39758 5.42512 5.57804 5.80192 5.97876 6.19475 6.49438 7.00410 7.13495 7.66430 8.09790 9.07282 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020000 B = 0.003401 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.687748 B = 8230.101265 C = 8978.000266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.109 4.109 3 H 0.120 0.880 4 C -0.146 4.146 5 C 0.039 3.961 6 O -0.385 6.385 7 C 0.063 3.937 8 H 0.109 0.891 9 C 0.535 3.465 10 O -0.572 6.572 11 N -0.605 5.605 12 C 0.107 3.893 13 C -0.054 4.054 14 C -0.116 4.116 15 C 0.139 3.861 16 H 0.063 0.937 17 C -0.155 4.155 18 C -0.108 4.108 19 C 0.117 3.883 20 N -0.618 5.618 21 C -0.246 4.246 22 H 0.044 0.956 23 C -0.034 4.034 24 N -0.966 5.966 25 Si 0.957 3.043 26 H -0.266 1.266 27 H -0.318 1.318 28 H -0.259 1.259 29 C 0.145 3.855 30 C -0.108 4.108 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.034 0.966 34 H 0.111 0.889 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.061 0.939 44 H 0.045 0.955 45 H 0.087 0.913 46 H 0.065 0.935 47 H 0.048 0.952 48 H 0.034 0.966 49 H 0.261 0.739 50 H 0.047 0.953 51 H 0.033 0.967 52 H 0.062 0.938 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.618 -16.097 -6.711 22.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.128 4.128 3 H 0.138 0.862 4 C -0.183 4.183 5 C -0.037 4.037 6 O -0.304 6.304 7 C 0.002 3.998 8 H 0.127 0.873 9 C 0.324 3.676 10 O -0.451 6.451 11 N -0.340 5.340 12 C -0.015 4.015 13 C -0.054 4.054 14 C -0.154 4.154 15 C 0.037 3.963 16 H 0.081 0.919 17 C -0.213 4.213 18 C -0.147 4.147 19 C -0.007 4.007 20 N -0.343 5.343 21 C -0.377 4.377 22 H 0.062 0.938 23 C -0.228 4.228 24 N -0.612 5.612 25 Si 0.786 3.214 26 H -0.192 1.192 27 H -0.248 1.248 28 H -0.183 1.183 29 C 0.020 3.980 30 C -0.146 4.146 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.129 0.871 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.121 0.879 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.080 0.920 44 H 0.064 0.936 45 H 0.105 0.895 46 H 0.083 0.917 47 H 0.066 0.934 48 H 0.052 0.948 49 H 0.069 0.931 50 H 0.066 0.934 51 H 0.050 0.950 52 H 0.081 0.919 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 14.458 -16.858 -6.629 23.177 hybrid contribution -0.670 0.372 0.717 1.050 sum 13.787 -16.486 -5.912 22.290 Atomic orbital electron populations 1.22181 0.94492 1.01324 1.03999 1.22583 0.96758 1.00924 0.92520 0.86237 1.23306 0.97789 0.99488 0.97764 1.23868 0.96892 1.01001 0.81918 1.88944 1.70881 1.37311 1.33268 1.22876 0.92120 0.88577 0.96240 0.87342 1.20390 0.83598 0.84522 0.79058 1.90665 1.66957 1.19425 1.68047 1.48586 1.29874 1.12729 1.42769 1.22565 0.96992 0.79443 1.02496 1.20876 0.94598 0.94306 0.95663 1.22789 1.01841 0.91624 0.99113 1.21560 0.87052 0.95841 0.91893 0.91910 1.22066 1.02456 0.98080 0.98656 1.21712 0.97149 0.96317 0.99552 1.21490 0.91096 0.98065 0.90073 1.44382 1.53090 1.06135 1.30737 1.18794 1.35458 0.90785 0.92618 0.93801 1.26158 0.98336 0.96088 1.02265 1.69903 1.52325 1.07067 1.31881 0.85807 0.77122 0.78346 0.80133 1.19238 1.24765 1.18336 1.21109 0.95223 0.89050 0.92598 1.21752 0.96431 0.99839 0.96595 0.90786 0.90599 0.94661 0.87085 0.91395 0.89604 0.87922 0.88842 0.89176 0.90246 0.89269 0.90520 0.92035 0.93603 0.89492 0.91669 0.93399 0.94801 0.93050 0.93406 0.94954 0.91898 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 7.93 71.98 0.57 -2.52 16 2 C -0.11 -1.68 2.94 -9.69 -0.03 -1.71 16 3 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 4 C -0.15 -1.93 6.72 32.01 0.21 -1.71 16 5 C 0.04 0.57 7.72 72.67 0.56 1.13 16 6 O -0.39 -9.27 10.78 -130.76 -1.41 -10.68 16 7 C 0.06 1.27 3.05 30.22 0.09 1.36 16 8 H 0.11 1.70 7.73 -2.39 -0.02 1.68 16 9 C 0.53 13.92 4.83 87.66 0.42 14.35 16 10 O -0.57 -19.95 15.37 15.18 0.23 -19.72 16 11 N -0.61 -13.29 2.14 -788.82 -1.69 -14.98 16 12 C 0.11 1.93 4.69 86.56 0.41 2.33 16 13 C -0.05 -1.22 0.55 -51.92 -0.03 -1.25 16 14 C -0.12 -2.57 4.46 31.56 0.14 -2.43 16 15 C 0.14 3.18 3.11 45.37 0.14 3.32 16 16 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 17 C -0.15 -3.45 9.08 71.98 0.65 -2.80 16 18 C -0.11 -2.86 4.84 30.41 0.15 -2.72 16 19 C 0.12 4.35 3.89 86.41 0.34 4.68 16 20 N -0.62 -26.67 2.68 -698.49 -1.87 -28.55 16 21 C -0.25 -13.44 10.02 84.03 0.84 -12.60 16 22 H 0.04 2.67 8.06 -2.91 -0.02 2.65 16 23 C -0.03 -1.93 5.36 84.86 0.45 -1.48 16 24 N -0.97 -59.83 13.97 21.65 0.30 -59.52 16 25 Si 0.96 45.09 24.28 68.60 1.67 46.76 16 26 H -0.27 -11.56 6.48 99.48 0.65 -10.92 16 27 H -0.32 -15.58 7.11 99.48 0.71 -14.87 16 28 H -0.26 -11.55 6.58 99.48 0.65 -10.89 16 29 C 0.14 5.08 6.20 86.41 0.54 5.62 16 30 C -0.11 -2.82 4.16 30.41 0.13 -2.70 16 31 H 0.07 1.47 2.80 -2.39 -0.01 1.46 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.03 0.85 7.29 -2.39 -0.02 0.84 16 34 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 1.08 7.88 -2.39 -0.02 1.06 16 36 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 38 H 0.09 1.42 6.35 -2.39 -0.02 1.41 16 39 H 0.09 1.36 7.99 -2.39 -0.02 1.34 16 40 H 0.08 1.96 6.18 -2.39 -0.01 1.95 16 41 H 0.09 1.79 7.68 -2.39 -0.02 1.77 16 42 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.04 1.25 6.76 -2.39 -0.02 1.23 16 45 H 0.09 1.84 8.09 -2.38 -0.02 1.82 16 46 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.05 2.02 4.69 -2.39 -0.01 2.00 16 48 H 0.03 1.22 6.38 -2.39 -0.02 1.21 16 49 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 50 H 0.05 1.79 7.93 -2.39 -0.02 1.77 16 51 H 0.03 1.09 6.56 -2.39 -0.02 1.08 16 52 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 53 H 0.07 1.73 6.03 -2.39 -0.01 1.72 16 Total: -1.00 -73.28 377.07 3.60 -69.68 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.78 Total: 16.12 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 5.59 Total: 0.88 kcal Atomic # 7 Polarization: -99.79 SS G_CDS: -3.26 Total: -103.05 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -1.18 Total: -30.39 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.67 Total: 46.76 kcal Total: -73.28 3.60 -69.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086944221.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.383 kcal (2) G-P(sol) polarization free energy of solvation -73.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds