Wall clock time and date at job start Tue Mar 31 2020 21:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.42993 * 2 1 4 4 C 1.54806 * 110.49061 * 237.45892 * 2 1 3 5 5 C 1.54997 * 102.09315 * 220.43936 * 4 2 1 6 6 O 1.44385 * 103.62940 * 36.94259 * 5 4 2 7 7 C 1.43891 * 106.89994 * 320.15990 * 6 5 4 8 8 H 1.08996 * 109.72762 * 266.88562 * 7 6 5 9 9 C 1.50695 * 110.07163 * 145.85417 * 7 6 5 10 10 O 1.21279 * 120.00287 * 341.37137 * 9 7 6 11 11 N 1.34778 * 119.99655 * 161.37354 * 9 7 6 12 12 C 1.47178 * 125.66422 * 4.20182 * 11 9 7 13 13 C 1.53692 * 107.10544 * 178.41643 * 12 11 9 14 14 C 1.54540 * 103.72082 * 338.77921 * 13 12 11 15 15 C 1.47488 * 125.65886 * 184.51591 * 11 9 7 16 16 H 1.08996 * 110.35410 * 85.12803 * 15 11 9 17 17 C 1.53003 * 110.35367 * 322.83319 * 15 11 9 18 18 C 1.52273 * 110.46779 * 96.79940 * 13 12 11 19 19 C 1.53319 * 109.41718 * 183.17015 * 18 13 12 20 20 N 1.46920 * 108.70455 * 306.49334 * 19 18 13 21 21 C 1.36937 * 120.55786 * 234.20570 * 20 19 18 22 22 H 1.07994 * 120.00242 * 32.13826 * 21 20 19 23 23 C 1.38817 * 120.00126 * 212.13230 * 21 20 19 24 24 N 1.31621 * 119.99832 * 10.43380 * 23 21 20 25 25 Si 1.86794 * 120.00075 * 190.44149 * 23 21 20 26 26 H 1.48498 * 109.47460 * 59.99797 * 25 23 21 27 27 H 1.48506 * 109.46970 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47222 * 299.99615 * 25 23 21 29 29 C 1.46930 * 118.88070 * 54.23489 * 20 19 18 30 30 C 1.52270 * 110.81779 * 220.59525 * 13 12 11 31 31 H 1.09004 * 109.46866 * 177.09782 * 1 2 3 32 32 H 1.08995 * 109.47542 * 297.09267 * 1 2 3 33 33 H 1.09001 * 109.47741 * 57.09992 * 1 2 3 34 34 H 1.08996 * 110.91256 * 102.24134 * 4 2 1 35 35 H 1.09002 * 110.93671 * 338.65027 * 4 2 1 36 36 H 1.08994 * 110.62103 * 155.52273 * 5 4 2 37 37 H 1.08993 * 110.62118 * 278.36697 * 5 4 2 38 38 H 1.09000 * 109.91113 * 297.91161 * 12 11 9 39 39 H 1.08999 * 109.90783 * 59.17933 * 12 11 9 40 40 H 1.08999 * 111.01112 * 276.57895 * 14 13 12 41 41 H 1.08993 * 111.01452 * 152.70215 * 14 13 12 42 42 H 1.09004 * 109.46565 * 61.45857 * 17 15 11 43 43 H 1.09002 * 109.46857 * 181.45426 * 17 15 11 44 44 H 1.08995 * 109.47176 * 301.45670 * 17 15 11 45 45 H 1.08997 * 109.47961 * 303.15928 * 18 13 12 46 46 H 1.08997 * 109.47502 * 63.18860 * 18 13 12 47 47 H 1.08996 * 109.59498 * 186.72474 * 19 18 13 48 48 H 1.08998 * 109.72162 * 66.33721 * 19 18 13 49 49 H 0.97003 * 120.00292 * 180.02562 * 24 23 21 50 50 H 1.08999 * 109.60330 * 185.99578 * 29 20 19 51 51 H 1.09000 * 109.73155 * 65.59815 * 29 20 19 52 52 H 1.08999 * 109.48134 * 297.00142 * 30 13 12 53 53 H 1.09000 * 109.48614 * 57.02395 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9104 1.0214 0.0000 4 6 2.0719 -0.7800 -1.2225 5 6 3.2661 -1.5552 -0.6097 6 8 2.7994 -1.9117 0.7093 7 6 2.0694 -0.7795 1.2149 8 1 2.7350 -0.1430 1.7979 9 6 0.9229 -1.2455 2.0749 10 8 0.5234 -2.3871 1.9863 11 7 0.3417 -0.3934 2.9424 12 6 0.6656 1.0347 3.0900 13 6 -0.2744 1.6027 4.1652 14 6 -1.4491 0.5989 4.1925 15 6 -0.7201 -0.7389 3.9061 16 1 -0.2852 -1.1374 4.8226 17 6 -1.6883 -1.7514 3.2908 18 6 0.4218 1.6327 5.5191 19 6 -0.5609 2.1279 6.5867 20 7 -1.1266 3.4107 6.1475 21 6 -1.0601 4.5141 6.9557 22 1 -0.2201 4.6460 7.6215 23 6 -2.0723 5.4634 6.9191 24 7 -3.1883 5.2106 6.2687 25 14 -1.8505 7.0994 7.7928 26 1 -0.6742 7.8074 7.2268 27 1 -3.0663 7.9307 7.6031 28 1 -1.6344 6.8612 9.2425 29 6 -1.7656 3.4895 4.8268 30 6 -0.7749 2.9856 3.7706 31 1 -0.3633 -1.0264 -0.0520 32 1 -0.3634 0.4680 0.9148 33 1 -0.3634 0.5582 -0.8628 34 1 2.4103 -0.0966 -2.0012 35 1 1.3200 -1.4673 -1.6105 36 1 3.4841 -2.4489 -1.1942 37 1 4.1464 -0.9158 -0.5455 38 1 1.7033 1.1495 3.4032 39 1 0.5010 1.5522 2.1449 40 1 -2.1740 0.8243 3.4103 41 1 -1.9262 0.5821 5.1723 42 1 -1.1493 -2.6665 3.0453 43 1 -2.4805 -1.9767 4.0048 44 1 -2.1246 -1.3323 2.3842 45 1 0.7618 0.6292 5.7753 46 1 1.2778 2.3058 5.4727 47 1 -0.0355 2.2644 7.5319 48 1 -1.3618 1.3999 6.7154 49 1 -3.8955 5.8740 6.2428 50 1 -2.0346 4.5236 4.6117 51 1 -2.6613 2.8684 4.8137 52 1 0.0686 3.6728 3.7063 53 1 -1.2727 2.9295 2.8025 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086944222.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:28 Heat of formation + Delta-G solvation = -72.166730 kcal Electronic energy + Delta-G solvation = -31894.731920 eV Core-core repulsion = 27959.096329 eV Total energy + Delta-G solvation = -3935.635591 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.13349 -40.69895 -39.12289 -37.37688 -34.95407 -34.57934 -33.01812 -32.61890 -31.51470 -30.67525 -28.70665 -27.83775 -27.11358 -25.71018 -24.49407 -23.82011 -22.85800 -22.49283 -21.74983 -19.81730 -19.59495 -18.46451 -18.19970 -17.58861 -17.33916 -16.80153 -16.61259 -16.00225 -15.65832 -15.62383 -15.29041 -15.14127 -14.99799 -14.80054 -14.63722 -14.31839 -14.13800 -13.90777 -13.64570 -13.57722 -13.32883 -13.11632 -13.05920 -12.96697 -12.81653 -12.55690 -12.38758 -12.32319 -12.30334 -12.12832 -12.07100 -11.94107 -11.83666 -11.75083 -11.70076 -11.39544 -11.04080 -10.98105 -10.94326 -10.47681 -10.27832 -9.63525 -8.53534 -7.82169 -5.32810 1.49616 1.50295 1.52677 1.57062 1.80012 2.53815 2.98989 3.30371 3.31760 3.45691 3.53863 3.72765 3.73557 3.80654 3.83183 4.02419 4.12485 4.22200 4.25424 4.29108 4.30813 4.44245 4.50447 4.51249 4.59578 4.62688 4.68543 4.72469 4.74399 4.76655 4.83098 4.85273 4.91690 4.94047 4.98449 5.02820 5.10194 5.13150 5.15066 5.23661 5.26240 5.30151 5.33274 5.38073 5.47527 5.51984 5.60767 5.70805 5.80470 5.88764 6.47137 6.52612 7.16039 7.22497 7.93143 8.44753 9.22511 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021511 B = 0.002936 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.336134 B = 9534.469027 C = 9942.027235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.109 4.109 3 H 0.121 0.879 4 C -0.144 4.144 5 C 0.038 3.962 6 O -0.385 6.385 7 C 0.062 3.938 8 H 0.106 0.894 9 C 0.535 3.465 10 O -0.566 6.566 11 N -0.607 5.607 12 C 0.109 3.891 13 C -0.050 4.050 14 C -0.110 4.110 15 C 0.138 3.862 16 H 0.073 0.927 17 C -0.154 4.154 18 C -0.107 4.107 19 C 0.142 3.858 20 N -0.608 5.608 21 C -0.262 4.262 22 H 0.062 0.938 23 C -0.046 4.046 24 N -0.934 5.934 25 Si 0.964 3.036 26 H -0.277 1.277 27 H -0.296 1.296 28 H -0.279 1.279 29 C 0.182 3.818 30 C -0.111 4.111 31 H 0.037 0.963 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.068 0.932 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.048 0.952 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.047 0.953 48 H 0.016 0.984 49 H 0.249 0.751 50 H 0.050 0.950 51 H -0.002 1.002 52 H 0.058 0.942 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.395 -9.468 -14.931 21.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.128 4.128 3 H 0.139 0.861 4 C -0.182 4.182 5 C -0.038 4.038 6 O -0.304 6.304 7 C 0.001 3.999 8 H 0.124 0.876 9 C 0.324 3.676 10 O -0.445 6.445 11 N -0.342 5.342 12 C -0.013 4.013 13 C -0.051 4.051 14 C -0.148 4.148 15 C 0.036 3.964 16 H 0.091 0.909 17 C -0.212 4.212 18 C -0.146 4.146 19 C 0.017 3.983 20 N -0.332 5.332 21 C -0.392 4.392 22 H 0.080 0.920 23 C -0.242 4.242 24 N -0.580 5.580 25 Si 0.793 3.207 26 H -0.202 1.202 27 H -0.222 1.222 28 H -0.205 1.205 29 C 0.057 3.943 30 C -0.151 4.151 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.131 0.869 35 H 0.087 0.913 36 H 0.121 0.879 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.068 0.932 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.066 0.934 48 H 0.034 0.966 49 H 0.058 0.942 50 H 0.068 0.932 51 H 0.016 0.984 52 H 0.077 0.923 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.132 -10.235 -14.928 21.249 hybrid contribution -0.570 1.017 0.789 1.408 sum 10.562 -9.218 -14.139 19.911 Atomic orbital electron populations 1.22073 0.94424 1.01491 1.03461 1.22525 0.96754 1.01021 0.92463 0.86127 1.23241 0.97740 0.99504 0.97671 1.23865 0.96985 1.00984 0.81937 1.88972 1.70896 1.37395 1.33172 1.22905 0.92063 0.88552 0.96348 0.87640 1.20377 0.83523 0.84431 0.79260 1.90620 1.64822 1.20526 1.68497 1.48612 1.38329 1.10576 1.36659 1.22320 0.99671 0.79565 0.99763 1.20828 0.94657 0.94868 0.94754 1.22825 0.96976 0.92566 1.02478 1.21937 0.87556 0.95666 0.91276 0.90876 1.22071 0.98876 0.99642 1.00572 1.21779 0.98059 1.00573 0.94178 1.21074 0.94389 0.87026 0.95829 1.44226 1.67955 1.05911 1.15073 1.19435 1.01976 0.99309 1.18488 0.92037 1.25857 0.94630 1.02992 1.00727 1.70121 1.05811 1.35018 1.47049 0.85399 0.76583 0.80063 0.78703 1.20243 1.22211 1.20476 1.20552 0.91503 0.98915 0.83381 1.21895 0.99682 0.94915 0.98582 0.94423 0.91847 0.90146 0.86924 0.91313 0.87942 0.89719 0.89705 0.89311 0.90931 0.90647 0.91572 0.91194 0.93244 0.91113 0.91847 0.93432 0.96594 0.94217 0.93189 0.98365 0.92310 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 7.89 71.98 0.57 -2.34 16 2 C -0.11 -1.66 3.36 -9.81 -0.03 -1.70 16 3 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.14 -1.85 6.71 31.89 0.21 -1.63 16 5 C 0.04 0.56 7.71 72.67 0.56 1.12 16 6 O -0.39 -9.49 10.83 -131.13 -1.42 -10.91 16 7 C 0.06 1.31 3.20 30.22 0.10 1.41 16 8 H 0.11 1.82 7.61 -2.39 -0.02 1.80 16 9 C 0.53 14.60 4.85 87.66 0.43 15.02 16 10 O -0.57 -19.88 14.05 14.83 0.21 -19.67 16 11 N -0.61 -14.90 2.52 -788.64 -1.99 -16.89 16 12 C 0.11 2.32 4.99 86.48 0.43 2.75 16 13 C -0.05 -1.37 0.55 -51.91 -0.03 -1.40 16 14 C -0.11 -3.07 4.35 31.81 0.14 -2.93 16 15 C 0.14 3.63 3.46 45.49 0.16 3.78 16 16 H 0.07 1.95 7.74 -2.39 -0.02 1.93 16 17 C -0.15 -4.13 8.65 71.98 0.62 -3.51 16 18 C -0.11 -3.16 4.72 30.46 0.14 -3.02 16 19 C 0.14 5.49 6.18 86.41 0.53 6.03 16 20 N -0.61 -28.77 2.97 -698.61 -2.08 -30.84 16 21 C -0.26 -13.89 9.57 84.03 0.80 -13.08 16 22 H 0.06 3.20 7.85 -2.91 -0.02 3.18 16 23 C -0.05 -2.52 5.05 84.86 0.43 -2.10 16 24 N -0.93 -53.70 11.08 21.65 0.24 -53.46 16 25 Si 0.96 43.78 29.57 68.60 2.03 45.81 16 26 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 27 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 28 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 29 C 0.18 8.11 4.97 86.41 0.43 8.53 16 30 C -0.11 -3.58 4.73 30.46 0.14 -3.44 16 31 H 0.04 0.89 7.48 -2.38 -0.02 0.87 16 32 H 0.06 1.29 4.67 -2.39 -0.01 1.27 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.07 1.06 7.85 -2.39 -0.02 1.04 16 36 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.08 1.58 7.59 -2.39 -0.02 1.56 16 39 H 0.09 1.63 6.01 -2.39 -0.01 1.62 16 40 H 0.07 2.04 7.92 -2.39 -0.02 2.02 16 41 H 0.08 2.37 6.08 -2.39 -0.01 2.35 16 42 H 0.07 2.05 5.88 -2.38 -0.01 2.03 16 43 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.07 1.84 7.47 -2.39 -0.02 1.83 16 46 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16 47 H 0.05 1.85 7.93 -2.39 -0.02 1.83 16 48 H 0.02 0.64 6.48 -2.39 -0.02 0.62 16 49 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 50 H 0.05 2.59 6.12 -2.39 -0.01 2.58 16 51 H 0.00 -0.08 7.56 -2.39 -0.02 -0.10 16 52 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 53 H 0.07 1.98 8.11 -2.39 -0.02 1.96 16 Total: -1.00 -68.32 385.22 3.51 -64.81 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.88 Total: 17.66 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 5.64 Total: 3.51 kcal Atomic # 7 Polarization: -97.37 SS G_CDS: -3.82 Total: -101.20 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -1.21 Total: -30.58 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -68.32 3.51 -64.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086944222.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.360 kcal (2) G-P(sol) polarization free energy of solvation -68.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds