Wall clock time and date at job start Tue Mar 31 2020 20:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 110.33432 * 2 1 4 4 C 1.54481 * 110.46334 * 237.68875 * 2 1 3 5 5 C 1.54515 * 104.06029 * 217.14177 * 4 2 1 6 6 C 1.54476 * 104.06200 * 359.97438 * 5 4 2 7 7 H 1.08999 * 110.37410 * 265.03458 * 6 5 4 8 8 C 1.50705 * 110.37114 * 142.81106 * 6 5 4 9 9 O 1.21286 * 119.99558 * 244.99436 * 8 6 5 10 10 N 1.34767 * 120.00168 * 65.00103 * 8 6 5 11 11 C 1.47564 * 125.63110 * 0.02562 * 10 8 6 12 12 C 1.54141 * 104.78020 * 203.33390 * 11 10 8 13 13 C 1.54363 * 102.47769 * 323.91348 * 12 11 10 14 14 C 1.47084 * 125.62820 * 179.72199 * 10 8 6 15 15 H 1.08993 * 109.88624 * 59.56728 * 14 10 8 16 16 C 1.53001 * 109.87759 * 298.41226 * 14 10 8 17 17 C 1.52111 * 110.65061 * 206.01456 * 12 11 10 18 18 C 1.53345 * 109.44069 * 295.62608 * 17 12 11 19 19 N 1.46919 * 108.69246 * 306.70460 * 18 17 12 20 20 C 1.36942 * 120.55359 * 234.36119 * 19 18 17 21 21 H 1.08000 * 119.99287 * 27.96360 * 20 19 18 22 22 C 1.38803 * 120.00258 * 207.95753 * 20 19 18 23 23 N 1.31621 * 120.00465 * 17.47350 * 22 20 19 24 24 Si 1.86807 * 120.00005 * 197.47140 * 22 20 19 25 25 H 1.48494 * 109.47092 * 89.99962 * 24 22 20 26 26 H 1.48505 * 109.46934 * 210.00429 * 24 22 20 27 27 H 1.48502 * 109.46772 * 330.00013 * 24 22 20 28 28 C 1.46935 * 118.89780 * 54.34495 * 19 18 17 29 29 C 1.52109 * 110.64814 * 81.79229 * 12 11 10 30 30 O 1.44428 * 104.80831 * 23.97988 * 6 5 4 31 31 H 1.09005 * 109.46948 * 299.20563 * 1 2 3 32 32 H 1.09003 * 109.47139 * 59.19870 * 1 2 3 33 33 H 1.08995 * 109.47695 * 179.20659 * 1 2 3 34 34 H 1.08989 * 110.51309 * 98.50029 * 4 2 1 35 35 H 1.08996 * 110.51059 * 335.78121 * 4 2 1 36 36 H 1.09001 * 110.51253 * 241.35277 * 5 4 2 37 37 H 1.09005 * 110.50980 * 118.64389 * 5 4 2 38 38 H 1.08994 * 110.37606 * 322.16119 * 11 10 8 39 39 H 1.09003 * 110.37536 * 84.39655 * 11 10 8 40 40 H 1.09007 * 110.73164 * 152.98831 * 13 12 11 41 41 H 1.09004 * 110.73289 * 276.11245 * 13 12 11 42 42 H 1.09003 * 109.46539 * 61.46112 * 16 14 10 43 43 H 1.09004 * 109.47253 * 181.45149 * 16 14 10 44 44 H 1.08996 * 109.47426 * 301.46044 * 16 14 10 45 45 H 1.08992 * 109.47494 * 55.62140 * 17 12 11 46 46 H 1.08996 * 109.47362 * 175.64145 * 17 12 11 47 47 H 1.09004 * 109.59824 * 186.93951 * 18 17 12 48 48 H 1.09010 * 109.59666 * 66.46872 * 18 17 12 49 49 H 0.96999 * 120.00312 * 180.02562 * 23 22 20 50 50 H 1.09004 * 109.60373 * 185.89259 * 28 19 18 51 51 H 1.09005 * 109.73627 * 65.49116 * 28 19 18 52 52 H 1.09001 * 109.47704 * 184.35462 * 29 12 11 53 53 H 1.09002 * 109.47795 * 304.37031 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0701 -0.7736 -1.2232 5 6 3.3207 -1.5032 -0.6837 6 6 3.3886 -1.0835 0.8014 7 1 4.0540 -0.2290 0.9242 8 6 3.8552 -2.2369 1.6517 9 8 3.1099 -2.7232 2.4757 10 7 5.1007 -2.7279 1.4966 11 6 6.1064 -2.2330 0.5369 12 6 7.0618 -3.4230 0.3198 13 6 7.1135 -4.0691 1.7208 14 6 5.6840 -3.8414 2.2603 15 1 5.0879 -4.7424 2.1160 16 6 5.7367 -3.4816 3.7465 17 6 8.4415 -2.9346 -0.0946 18 6 8.3479 -2.2365 -1.4567 19 7 7.6918 -3.1446 -2.4072 20 6 8.2939 -3.4623 -3.5954 21 1 9.3709 -3.4499 -3.6751 22 6 7.5202 -3.8002 -4.6971 23 7 6.2406 -3.4931 -4.7219 24 14 8.2950 -4.6911 -6.1447 25 1 8.1934 -6.1577 -5.9353 26 1 7.5830 -4.3188 -7.3936 27 1 9.7246 -4.3048 -6.2560 28 6 6.3789 -3.7066 -2.0616 29 6 6.4839 -4.3964 -0.6961 30 8 2.0333 -0.7216 1.1451 31 1 -0.3633 0.5015 0.8971 32 1 -0.3633 0.5262 -0.8827 33 1 -0.3634 -1.0275 -0.0142 34 1 2.3449 -0.0834 -2.0207 35 1 1.3313 -1.4928 -1.5769 36 1 4.2139 -1.1737 -1.2145 37 1 3.2001 -2.5831 -0.7707 38 1 5.6293 -1.9531 -0.4023 39 1 6.6451 -1.3832 0.9561 40 1 7.3360 -5.1336 1.6469 41 1 7.8469 -3.5659 2.3510 42 1 4.7250 -3.3119 4.1152 43 1 6.1934 -4.3004 4.3026 44 1 6.3289 -2.5764 3.8805 45 1 8.8167 -2.2317 0.6491 46 1 9.1208 -3.7839 -0.1676 47 1 9.3492 -1.9949 -1.8134 48 1 7.7614 -1.3227 -1.3596 49 1 5.6998 -3.7296 -5.4916 50 1 6.0821 -4.4342 -2.8170 51 1 5.6382 -2.9083 -2.0120 52 1 7.1357 -5.2663 -0.7776 53 1 5.4927 -4.7141 -0.3721 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086944617.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:16 Heat of formation + Delta-G solvation = -79.457769 kcal Electronic energy + Delta-G solvation = -32079.813842 eV Core-core repulsion = 28143.862088 eV Total energy + Delta-G solvation = -3935.951755 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.00399 -40.63343 -39.27402 -37.47206 -34.80174 -33.78831 -33.30035 -32.50923 -31.87451 -31.57508 -28.75943 -27.80371 -26.85830 -25.95802 -24.12969 -23.75016 -22.84924 -22.11457 -22.03441 -20.33581 -19.60725 -18.43475 -18.20472 -17.55042 -17.23795 -16.91444 -16.81128 -16.01153 -15.73979 -15.36534 -15.31624 -15.07820 -14.86159 -14.84242 -14.69661 -14.35818 -14.05388 -13.96652 -13.54237 -13.43240 -13.29235 -13.12008 -13.05934 -12.96241 -12.86561 -12.79731 -12.57633 -12.52652 -12.28848 -12.25580 -11.97511 -11.90915 -11.82897 -11.77680 -11.74702 -11.36736 -11.06683 -11.03900 -10.90922 -10.62856 -10.45624 -9.68785 -8.59411 -7.82751 -5.25964 1.46007 1.47466 1.50343 1.57117 1.69687 2.54181 2.86792 3.27403 3.30779 3.51751 3.54207 3.69546 3.77178 3.79274 3.87551 3.92200 4.09756 4.11536 4.17596 4.24835 4.30545 4.39067 4.46583 4.47134 4.56635 4.59157 4.70238 4.74598 4.75290 4.78310 4.84260 4.91540 4.92106 4.94398 4.95836 4.98354 5.07711 5.10094 5.13812 5.23602 5.24336 5.31790 5.34198 5.39545 5.43608 5.46915 5.60055 5.70904 5.77957 5.83533 6.42950 6.44583 7.05934 7.21184 7.94253 8.43605 9.22325 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010792 B = 0.004297 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.995122 B = 6514.856513 C = 8492.922817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.062 3.938 3 H 0.091 0.909 4 C -0.145 4.145 5 C -0.139 4.139 6 C 0.066 3.934 7 H 0.113 0.887 8 C 0.531 3.469 9 O -0.570 6.570 10 N -0.603 5.603 11 C 0.100 3.900 12 C -0.052 4.052 13 C -0.107 4.107 14 C 0.132 3.868 15 H 0.056 0.944 16 C -0.151 4.151 17 C -0.105 4.105 18 C 0.139 3.861 19 N -0.606 5.606 20 C -0.257 4.257 21 H 0.065 0.935 22 C -0.046 4.046 23 N -0.930 5.930 24 Si 0.955 3.045 25 H -0.291 1.291 26 H -0.298 1.298 27 H -0.269 1.269 28 C 0.182 3.818 29 C -0.113 4.113 30 O -0.373 6.373 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.051 0.949 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.056 0.944 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.040 0.960 43 H 0.085 0.915 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.062 0.938 47 H 0.053 0.947 48 H 0.023 0.977 49 H 0.247 0.753 50 H 0.044 0.956 51 H 0.007 0.993 52 H 0.052 0.948 53 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.898 6.150 12.499 14.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.005 3.995 3 H 0.108 0.892 4 C -0.183 4.183 5 C -0.177 4.177 6 C 0.006 3.994 7 H 0.131 0.869 8 C 0.319 3.681 9 O -0.449 6.449 10 N -0.337 5.337 11 C -0.022 4.022 12 C -0.053 4.053 13 C -0.144 4.144 14 C 0.029 3.971 15 H 0.074 0.926 16 C -0.209 4.209 17 C -0.144 4.144 18 C 0.013 3.987 19 N -0.330 5.330 20 C -0.387 4.387 21 H 0.083 0.917 22 C -0.241 4.241 23 N -0.576 5.576 24 Si 0.785 3.215 25 H -0.218 1.218 26 H -0.225 1.225 27 H -0.194 1.194 28 C 0.056 3.944 29 C -0.152 4.152 30 O -0.292 6.292 31 H 0.084 0.916 32 H 0.114 0.886 33 H 0.070 0.930 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.120 0.880 42 H 0.059 0.941 43 H 0.104 0.896 44 H 0.085 0.915 45 H 0.110 0.890 46 H 0.080 0.920 47 H 0.071 0.929 48 H 0.041 0.959 49 H 0.056 0.944 50 H 0.062 0.938 51 H 0.025 0.975 52 H 0.071 0.929 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.586 5.867 13.013 14.507 hybrid contribution 0.027 -0.749 -1.435 1.619 sum -2.559 5.119 11.578 12.915 Atomic orbital electron populations 1.21814 0.91830 1.02696 1.03642 1.23329 0.96564 0.95863 0.83730 0.89155 1.23014 0.96459 1.00020 0.98768 1.22868 1.00624 1.01078 0.93095 1.22816 0.86914 0.95947 0.93768 0.86913 1.20214 0.80390 0.84261 0.83219 1.90653 1.54673 1.61808 1.37752 1.48564 1.11978 1.34723 1.38409 1.22704 0.89491 0.97487 0.92500 1.20879 0.95490 0.94390 0.94573 1.22762 0.94248 1.02596 0.94836 1.21703 0.94746 0.88488 0.92162 0.92563 1.22048 1.01744 1.02855 0.94294 1.21743 0.94461 1.00853 0.97368 1.21140 0.96278 0.91569 0.89665 1.44251 1.19768 1.51794 1.17183 1.19488 0.91058 1.40109 0.88077 0.91709 1.25624 0.96618 1.02461 0.99433 1.70151 1.07194 1.49641 1.30661 0.85445 0.78273 0.78551 0.79267 1.21777 1.22496 1.19350 1.20554 0.86049 0.95083 0.92680 1.21800 0.99065 0.98050 0.96277 1.89215 1.25520 1.75105 1.39407 0.91616 0.88597 0.92959 0.88314 0.90575 0.88953 0.92497 0.90514 0.89149 0.89329 0.87966 0.94090 0.89583 0.91525 0.89024 0.91953 0.92873 0.95930 0.94388 0.93787 0.97500 0.92914 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.53 71.98 0.69 -2.01 16 2 C 0.06 1.39 3.91 31.10 0.12 1.51 16 3 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 4 C -0.14 -3.38 6.63 31.61 0.21 -3.17 16 5 C -0.14 -3.87 5.43 31.61 0.17 -3.70 16 6 C 0.07 1.88 3.13 30.35 0.09 1.98 16 7 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 8 C 0.53 17.47 6.93 87.66 0.61 18.07 16 9 O -0.57 -23.01 15.59 15.33 0.24 -22.77 16 10 N -0.60 -17.02 3.06 -788.78 -2.41 -19.43 16 11 C 0.10 2.61 4.59 86.56 0.40 3.00 16 12 C -0.05 -1.41 0.54 -51.92 -0.03 -1.43 16 13 C -0.11 -2.26 5.43 31.56 0.17 -2.09 16 14 C 0.13 3.33 3.11 45.38 0.14 3.47 16 15 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 16 C -0.15 -3.39 9.11 71.98 0.66 -2.73 16 17 C -0.11 -2.78 4.83 30.42 0.15 -2.63 16 18 C 0.14 4.88 6.25 86.42 0.54 5.42 16 19 N -0.61 -27.60 2.98 -698.47 -2.08 -29.68 16 20 C -0.26 -13.31 9.57 84.03 0.80 -12.51 16 21 H 0.07 3.29 7.89 -2.91 -0.02 3.27 16 22 C -0.05 -2.45 4.90 84.86 0.42 -2.03 16 23 N -0.93 -52.69 11.20 21.65 0.24 -52.45 16 24 Si 0.96 43.59 29.59 68.60 2.03 45.62 16 25 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 26 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 28 C 0.18 8.06 5.01 86.41 0.43 8.49 16 29 C -0.11 -3.92 4.83 30.42 0.15 -3.77 16 30 O -0.37 -11.48 10.60 -130.60 -1.38 -12.87 16 31 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.05 1.11 8.13 -2.39 -0.02 1.09 16 34 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.08 1.81 7.86 -2.39 -0.02 1.79 16 36 H 0.09 2.58 6.61 -2.39 -0.02 2.57 16 37 H 0.06 1.85 7.87 -2.38 -0.02 1.83 16 38 H 0.08 2.29 3.25 -2.39 -0.01 2.28 16 39 H 0.09 1.96 7.98 -2.39 -0.02 1.94 16 40 H 0.09 1.79 8.01 -2.38 -0.02 1.77 16 41 H 0.10 1.69 7.69 -2.39 -0.02 1.67 16 42 H 0.04 1.15 6.89 -2.39 -0.02 1.13 16 43 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.09 1.81 8.09 -2.39 -0.02 1.79 16 46 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.05 1.87 7.93 -2.39 -0.02 1.85 16 48 H 0.02 0.78 7.63 -2.38 -0.02 0.76 16 49 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 50 H 0.04 2.32 6.01 -2.38 -0.01 2.31 16 51 H 0.01 0.32 6.51 -2.38 -0.02 0.31 16 52 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 53 H 0.05 1.60 7.85 -2.39 -0.02 1.58 16 Total: -1.00 -67.96 394.02 3.23 -64.74 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 0.87 Total: 20.97 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 5.72 Total: 5.88 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -4.25 Total: -101.56 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -1.15 Total: -35.64 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -67.96 3.23 -64.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086944617.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.720 kcal (2) G-P(sol) polarization free energy of solvation -67.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds