Wall clock time and date at job start Tue Mar 31 2020 20:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 115.56144 * 2 1 4 4 C 1.53001 * 117.49446 * 145.68290 * 2 1 3 5 5 C 1.53000 * 117.49542 * 214.30682 * 2 1 3 6 6 H 1.08994 * 117.51969 * 359.97438 * 5 2 1 7 7 C 1.50697 * 117.49670 * 145.02146 * 5 2 1 8 8 O 1.21287 * 120.00003 * 0.02562 * 7 5 2 9 9 N 1.34776 * 119.99988 * 180.02562 * 7 5 2 10 10 C 1.46928 * 120.62730 * 180.02562 * 9 7 5 11 11 C 1.53201 * 108.77100 * 233.62705 * 10 9 7 12 12 C 1.53038 * 109.31264 * 305.36467 * 11 10 9 13 13 C 1.53006 * 109.46006 * 181.38257 * 12 11 10 14 14 O 1.42893 * 109.47051 * 175.00132 * 13 12 11 15 15 C 1.42900 * 114.00069 * 180.02562 * 14 13 12 16 16 H 1.08998 * 110.77670 * 26.75959 * 15 14 13 17 17 C 1.55162 * 110.72409 * 149.99901 * 15 14 13 18 18 C 1.54903 * 101.58044 * 153.86528 * 17 15 14 19 19 N 1.47424 * 104.83619 * 322.99377 * 18 17 15 20 20 C 1.36935 * 125.64822 * 204.09837 * 19 18 17 21 21 H 1.07998 * 120.00005 * 164.04539 * 20 19 18 22 22 C 1.38816 * 120.00086 * 344.04035 * 20 19 18 23 23 N 1.31615 * 120.00581 * 156.78063 * 22 20 19 24 24 Si 1.86802 * 119.99749 * 336.77926 * 22 20 19 25 25 H 1.48499 * 109.47465 * 89.99747 * 24 22 20 26 26 H 1.48500 * 109.47263 * 329.99576 * 24 22 20 27 27 H 1.48500 * 109.47220 * 210.00014 * 24 22 20 28 28 C 1.47014 * 108.70078 * 24.35319 * 19 18 17 29 29 C 1.53048 * 109.53621 * 61.36584 * 12 11 10 30 30 C 1.46923 * 120.62973 * 0.02562 * 9 7 5 31 31 H 1.09001 * 109.47404 * 205.69130 * 1 2 3 32 32 H 1.09005 * 109.47073 * 325.68971 * 1 2 3 33 33 H 1.09003 * 109.47167 * 85.69419 * 1 2 3 34 34 H 1.08997 * 117.50108 * 0.02562 * 4 2 1 35 35 H 1.09000 * 117.51774 * 214.96506 * 4 2 1 36 36 H 1.08999 * 109.58962 * 113.84921 * 10 9 7 37 37 H 1.08997 * 109.70913 * 353.48366 * 10 9 7 38 38 H 1.09004 * 109.49736 * 185.41272 * 11 10 9 39 39 H 1.09003 * 109.52358 * 65.33172 * 11 10 9 40 40 H 1.08996 * 109.46312 * 301.35909 * 12 11 10 41 41 H 1.08997 * 109.46290 * 55.00108 * 13 12 11 42 42 H 1.08998 * 109.46966 * 295.00224 * 13 12 11 43 43 H 1.09006 * 110.99945 * 35.79278 * 17 15 14 44 44 H 1.08993 * 111.03582 * 271.96248 * 17 15 14 45 45 H 1.09007 * 110.36421 * 204.15085 * 18 17 15 46 46 H 1.09004 * 110.36697 * 81.83691 * 18 17 15 47 47 H 0.97001 * 119.99135 * 4.51902 * 23 22 20 48 48 H 1.09008 * 109.88097 * 118.13119 * 28 19 18 49 49 H 1.09002 * 109.88779 * 239.29392 * 28 19 18 50 50 H 1.09001 * 109.49636 * 58.58676 * 29 12 11 51 51 H 1.09004 * 109.49692 * 178.68260 * 29 12 11 52 52 H 1.08998 * 109.58916 * 246.15548 * 30 9 7 53 53 H 1.08994 * 109.59041 * 6.43633 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 0.7652 5 6 2.2364 -1.1211 -0.7649 6 1 1.6115 -1.8590 -1.2679 7 6 3.5292 -0.7813 -1.4608 8 8 3.9720 0.3463 -1.4008 9 7 4.1933 -1.7303 -2.1497 10 6 5.4552 -1.4144 -2.8329 11 6 5.3402 -1.8369 -4.3010 12 6 4.9386 -3.3119 -4.3731 13 6 4.8564 -3.7468 -5.8378 14 8 4.5959 -5.1502 -5.9040 15 6 4.5002 -5.6614 -7.2350 16 1 5.0799 -5.0501 -7.9266 17 6 4.9636 -7.1412 -7.2895 18 6 4.1791 -7.6677 -8.5170 19 7 2.8716 -6.9901 -8.4485 20 6 1.7066 -7.4456 -9.0055 21 1 0.7601 -7.0287 -8.6943 22 6 1.7419 -8.4430 -9.9703 23 7 0.6825 -9.1959 -10.1778 24 14 3.2933 -8.7167 -10.9742 25 1 4.1642 -9.7002 -10.2815 26 1 4.0202 -7.4304 -11.1228 27 1 2.9290 -9.2372 -12.3164 28 6 3.0271 -5.7415 -7.6882 29 6 3.5742 -3.5040 -3.7069 30 6 3.6693 -3.1005 -2.2319 31 1 -0.3634 -0.9261 0.4455 32 1 -0.3633 0.8489 0.5793 33 1 -0.3634 0.0772 -1.0248 34 1 1.6111 -1.8586 1.2681 35 1 3.1716 -0.8755 1.2684 36 1 6.2731 -1.9575 -2.3594 37 1 5.6462 -0.3428 -2.7750 38 1 6.3011 -1.6969 -4.7962 39 1 4.5834 -1.2291 -4.7968 40 1 5.6833 -3.9168 -3.8560 41 1 5.8015 -3.5287 -6.3350 42 1 4.0514 -3.2040 -6.3332 43 1 4.6753 -7.6744 -6.3835 44 1 6.0388 -7.2087 -7.4545 45 1 4.0506 -8.7481 -8.4502 46 1 4.6958 -7.4028 -9.4396 47 1 -0.1435 -9.0120 -9.7037 48 1 2.7856 -4.8886 -8.3227 49 1 2.3731 -5.7543 -6.8163 50 1 2.8337 -2.8804 -4.2079 51 1 3.2781 -4.5505 -3.7793 52 1 4.3417 -3.7809 -1.7094 53 1 2.6806 -3.1416 -1.7750 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088235912.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:12 Heat of formation + Delta-G solvation = -60.769372 kcal Electronic energy + Delta-G solvation = -29440.723427 eV Core-core repulsion = 25505.582062 eV Total energy + Delta-G solvation = -3935.141365 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.49764 -40.16679 -39.13284 -37.81216 -37.32028 -34.79409 -34.14338 -32.22444 -31.30702 -29.82971 -29.53659 -28.32022 -25.87796 -25.33185 -24.38230 -23.37689 -22.71959 -21.87530 -21.69137 -21.12734 -19.89612 -19.56990 -18.45814 -18.00698 -17.26284 -17.10835 -16.41609 -16.20621 -16.11218 -15.64514 -15.57069 -15.30617 -15.10232 -14.99594 -14.82554 -14.56056 -14.14700 -14.09174 -13.85612 -13.69709 -13.61833 -13.30625 -13.21242 -13.03880 -12.98335 -12.92138 -12.49946 -12.37219 -12.26005 -12.24071 -11.77248 -11.72332 -11.57487 -11.54526 -11.35347 -11.34406 -11.27929 -10.97880 -10.80181 -10.72275 -10.44851 -9.72544 -9.17169 -8.64942 -5.50203 1.39746 1.40818 1.54238 1.70957 1.91453 2.52404 2.55555 2.80034 3.05006 3.39428 3.42153 3.65198 3.70418 3.75813 3.79869 3.84207 3.86641 3.94806 4.06606 4.07825 4.11859 4.30354 4.35515 4.37070 4.38567 4.43023 4.52932 4.59320 4.64448 4.69472 4.76704 4.77938 4.82187 4.84233 4.85570 4.90587 4.91438 4.96603 4.97317 4.99862 5.01984 5.02870 5.17845 5.19691 5.22553 5.38287 5.39618 5.53318 5.55978 6.09257 6.31041 6.32428 6.80367 7.08260 7.44153 8.10024 8.81790 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018442 B = 0.002088 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.935067 B =13404.579377 C =14459.093078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.130 4.130 3 H 0.094 0.906 4 C -0.131 4.131 5 C -0.202 4.202 6 H 0.141 0.859 7 C 0.538 3.462 8 O -0.589 6.589 9 N -0.606 5.606 10 C 0.111 3.889 11 C -0.119 4.119 12 C -0.077 4.077 13 C 0.060 3.940 14 O -0.379 6.379 15 C 0.093 3.907 16 H 0.090 0.910 17 C -0.113 4.113 18 C 0.095 3.905 19 N -0.628 5.628 20 C -0.322 4.322 21 H 0.036 0.964 22 C -0.076 4.076 23 N -0.954 5.954 24 Si 1.108 2.892 25 H -0.266 1.266 26 H -0.264 1.264 27 H -0.304 1.304 28 C 0.112 3.888 29 C -0.127 4.127 30 C 0.109 3.891 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.130 0.870 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.057 0.943 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.040 0.960 43 H 0.074 0.926 44 H 0.111 0.889 45 H 0.047 0.953 46 H 0.043 0.957 47 H 0.247 0.753 48 H 0.022 0.978 49 H 0.022 0.978 50 H 0.054 0.946 51 H 0.078 0.922 52 H 0.086 0.914 53 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.213 16.393 21.439 29.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.149 4.149 3 H 0.112 0.888 4 C -0.169 4.169 5 C -0.223 4.223 6 H 0.159 0.841 7 C 0.328 3.672 8 O -0.470 6.470 9 N -0.338 5.338 10 C -0.011 4.011 11 C -0.157 4.157 12 C -0.096 4.096 13 C -0.017 4.017 14 O -0.298 6.298 15 C 0.035 3.965 16 H 0.108 0.892 17 C -0.151 4.151 18 C -0.029 4.029 19 N -0.357 5.357 20 C -0.451 4.451 21 H 0.054 0.946 22 C -0.270 4.270 23 N -0.598 5.598 24 Si 0.933 3.067 25 H -0.192 1.192 26 H -0.189 1.189 27 H -0.232 1.232 28 C -0.014 4.014 29 C -0.165 4.165 30 C -0.012 4.012 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.148 0.852 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.115 0.885 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.093 0.907 44 H 0.130 0.870 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.056 0.944 48 H 0.040 0.960 49 H 0.040 0.960 50 H 0.073 0.927 51 H 0.097 0.903 52 H 0.105 0.895 53 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 12.026 15.899 20.475 28.577 hybrid contribution -1.620 1.124 0.470 2.027 sum 10.406 17.022 20.945 28.927 Atomic orbital electron populations 1.21405 0.90640 1.03360 1.02365 1.22397 0.96399 0.94185 1.01922 0.88786 1.23185 1.02923 1.01271 0.89483 1.22407 0.96908 1.06190 0.96798 0.84093 1.20172 0.85229 0.83769 0.78027 1.90649 1.70009 1.22651 1.63723 1.48184 1.23874 1.10968 1.50756 1.21639 0.85444 1.01925 0.92120 1.21837 1.03177 0.94694 0.96001 1.21073 0.98239 0.96272 0.93988 1.22743 1.00057 0.81163 0.97689 1.87880 1.92450 1.23688 1.25790 1.22935 0.93651 0.95698 0.84264 0.89209 1.22787 1.00825 0.93877 0.97591 1.22222 0.85973 0.97022 0.97683 1.44769 1.05818 1.21497 1.63618 1.19906 0.84581 1.21476 1.19091 0.94629 1.27315 1.07048 0.94349 0.98279 1.71028 1.03556 1.36312 1.48873 0.83306 0.71881 0.76946 0.74615 1.19160 1.18945 1.23234 1.21898 0.97125 0.88175 0.94193 1.21901 0.97096 1.02270 0.95219 1.21949 1.01339 0.81160 0.96793 0.90839 0.91004 0.92293 0.85207 0.89016 0.89653 0.90399 0.88465 0.92456 0.89174 0.91465 0.94176 0.90713 0.87048 0.93442 0.93957 0.94359 0.95985 0.96011 0.92731 0.90343 0.89533 0.88051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 10.19 71.98 0.73 -0.57 16 2 C -0.13 -1.95 5.92 -10.79 -0.06 -2.01 16 3 H 0.09 1.83 7.67 -2.39 -0.02 1.81 16 4 C -0.13 -1.56 9.88 30.60 0.30 -1.26 16 5 C -0.20 -3.10 4.85 -11.54 -0.06 -3.15 16 6 H 0.14 1.68 6.56 -2.39 -0.02 1.66 16 7 C 0.54 11.50 7.48 87.66 0.66 12.15 16 8 O -0.59 -17.16 15.67 -3.05 -0.05 -17.21 16 9 N -0.61 -10.50 2.97 -818.86 -2.43 -12.94 16 10 C 0.11 1.75 6.43 86.36 0.56 2.30 16 11 C -0.12 -1.68 5.36 30.67 0.16 -1.52 16 12 C -0.08 -1.23 2.39 -10.76 -0.03 -1.25 16 13 C 0.06 1.19 5.16 71.98 0.37 1.56 16 14 O -0.38 -10.05 9.59 -148.98 -1.43 -11.48 16 15 C 0.09 2.81 3.43 31.79 0.11 2.92 16 16 H 0.09 2.33 7.83 -2.39 -0.02 2.31 16 17 C -0.11 -3.45 6.81 31.99 0.22 -3.23 16 18 C 0.10 3.90 4.70 86.85 0.41 4.31 16 19 N -0.63 -31.15 3.23 -691.98 -2.24 -33.39 16 20 C -0.32 -19.19 10.44 84.03 0.88 -18.32 16 21 H 0.04 2.32 8.06 -2.91 -0.02 2.30 16 22 C -0.08 -4.59 5.43 84.86 0.46 -4.13 16 23 N -0.95 -61.89 13.70 21.65 0.30 -61.59 16 24 Si 1.11 53.00 24.70 68.60 1.69 54.69 16 25 H -0.27 -11.52 6.70 99.48 0.67 -10.85 16 26 H -0.26 -11.49 6.25 99.48 0.62 -10.87 16 27 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 28 C 0.11 4.56 7.03 86.73 0.61 5.17 16 29 C -0.13 -2.14 5.27 30.68 0.16 -1.98 16 30 C 0.11 1.47 6.35 86.37 0.55 2.01 16 31 H 0.07 0.59 7.90 -2.39 -0.02 0.57 16 32 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 34 H 0.13 0.91 8.05 -2.39 -0.02 0.89 16 35 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 1.50 7.01 -2.39 -0.02 1.49 16 38 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.07 1.10 8.11 -2.39 -0.02 1.08 16 42 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 44 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 45 H 0.05 2.08 6.52 -2.38 -0.02 2.07 16 46 H 0.04 1.67 5.46 -2.39 -0.01 1.66 16 47 H 0.25 16.17 8.73 -92.71 -0.81 15.37 16 48 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 49 H 0.02 0.94 8.05 -2.39 -0.02 0.92 16 50 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.08 1.53 7.79 -2.39 -0.02 1.51 16 52 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 53 H 0.10 1.09 5.51 -2.39 -0.01 1.08 16 Total: -1.00 -77.12 406.13 2.58 -74.54 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.70 Total: 14.36 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: 6.03 Total: -6.99 kcal Atomic # 7 Polarization: -103.55 SS G_CDS: -4.37 Total: -107.92 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -1.48 Total: -28.69 kcal Atomic # 14 Polarization: 53.00 SS G_CDS: 1.69 Total: 54.69 kcal Total: -77.12 2.58 -74.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088235912.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.771 kcal (2) G-P(sol) polarization free energy of solvation -77.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds