Wall clock time and date at job start Tue Mar 31 2020 20:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 115.55018 * 2 1 4 4 C 1.52998 * 117.50034 * 214.32434 * 2 1 3 5 5 C 1.53001 * 60.00347 * 252.51286 * 4 2 1 6 6 H 1.08996 * 117.50157 * 107.48798 * 5 4 2 7 7 C 1.50702 * 117.49877 * 252.51183 * 5 4 2 8 8 O 1.21284 * 120.00072 * 68.61582 * 7 5 4 9 9 N 1.34774 * 120.00107 * 248.61879 * 7 5 4 10 10 C 1.46923 * 120.62704 * 359.72389 * 9 7 5 11 11 C 1.53629 * 108.54538 * 126.36686 * 10 9 7 12 12 C 1.53042 * 109.23993 * 54.85313 * 11 10 9 13 13 C 1.53002 * 109.44827 * 178.49831 * 12 11 10 14 14 O 1.42900 * 109.47073 * 295.06062 * 13 12 11 15 15 C 1.42901 * 114.00010 * 179.97438 * 14 13 12 16 16 H 1.08996 * 110.63887 * 333.14390 * 15 14 13 17 17 C 1.55159 * 110.72002 * 209.99903 * 15 14 13 18 18 C 1.54902 * 101.58311 * 206.13401 * 17 15 14 19 19 N 1.47431 * 104.83068 * 37.00997 * 18 17 15 20 20 C 1.36939 * 125.64855 * 155.91388 * 19 18 17 21 21 H 1.07993 * 120.00177 * 179.97438 * 20 19 18 22 22 C 1.38810 * 119.99832 * 359.97438 * 20 19 18 23 23 N 1.31624 * 120.00475 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00003 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46803 * 59.99671 * 24 22 20 26 26 H 1.48493 * 109.47148 * 179.97438 * 24 22 20 27 27 H 1.48491 * 109.47163 * 299.99977 * 24 22 20 28 28 C 1.47018 * 108.70203 * 335.87496 * 19 18 17 29 29 C 1.53042 * 109.53750 * 298.51144 * 12 11 10 30 30 C 1.46923 * 120.63472 * 179.97438 * 9 7 5 31 31 H 1.09002 * 109.47153 * 154.28028 * 1 2 3 32 32 H 1.09001 * 109.46832 * 34.28219 * 1 2 3 33 33 H 1.09004 * 109.47261 * 274.28200 * 1 2 3 34 34 H 1.08998 * 117.50041 * 0.02562 * 4 2 1 35 35 H 1.09003 * 117.49853 * 144.99608 * 4 2 1 36 36 H 1.09007 * 109.58708 * 246.19972 * 10 9 7 37 37 H 1.08995 * 109.59208 * 6.62389 * 10 9 7 38 38 H 1.08997 * 109.63053 * 294.86383 * 11 10 9 39 39 H 1.08996 * 109.45743 * 174.73564 * 11 10 9 40 40 H 1.09003 * 109.46003 * 58.53156 * 12 11 10 41 41 H 1.09000 * 109.46669 * 55.05973 * 13 12 11 42 42 H 1.08994 * 109.47387 * 175.06076 * 13 12 11 43 43 H 1.08995 * 111.00481 * 324.21277 * 17 15 14 44 44 H 1.09005 * 111.00058 * 88.02245 * 17 15 14 45 45 H 1.08996 * 110.37072 * 155.85052 * 18 17 15 46 46 H 1.09008 * 110.37068 * 278.06581 * 18 17 15 47 47 H 0.96996 * 120.00309 * 179.97438 * 23 22 20 48 48 H 1.09003 * 109.87900 * 241.63671 * 28 19 18 49 49 H 1.08997 * 109.88685 * 120.47744 * 28 19 18 50 50 H 1.08996 * 109.49903 * 301.41485 * 29 12 11 51 51 H 1.09003 * 109.49483 * 181.31500 * 29 12 11 52 52 H 1.09007 * 109.58360 * 353.38133 * 30 9 7 53 53 H 1.08994 * 109.58544 * 113.65553 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1208 -0.7652 5 6 2.2364 -1.1212 0.7648 6 1 1.6112 -1.8588 1.2678 7 6 3.5292 -0.7815 1.4607 8 8 3.9718 0.3461 1.4014 9 7 4.1937 -1.7308 2.1490 10 6 3.6671 -3.0998 2.2350 11 6 4.7625 -4.0743 1.7761 12 6 6.0285 -3.8352 2.6020 13 6 7.1108 -4.8286 2.1745 14 8 6.6927 -6.1565 2.4967 15 6 7.6369 -7.1668 2.1362 16 1 8.2513 -6.8371 1.2985 17 6 6.9145 -8.4974 1.7971 18 6 8.0162 -9.5391 2.1145 19 7 8.7087 -9.0060 3.3019 20 6 9.4154 -9.7452 4.2125 21 1 9.8889 -9.2584 5.0522 22 6 9.5232 -11.1203 4.0563 23 7 8.9457 -11.7137 3.0332 24 14 10.4878 -12.1286 5.2982 25 1 9.8823 -11.9668 6.6445 26 1 10.4510 -13.5610 4.9083 27 1 11.8964 -11.6597 5.3294 28 6 8.5157 -7.5492 3.3457 29 6 6.5277 -2.4069 2.3717 30 6 5.4555 -1.4151 2.8323 31 1 -0.3633 -0.9259 -0.4460 32 1 -0.3633 0.8492 -0.5789 33 1 -0.3634 0.0767 1.0248 34 1 1.6113 -1.8579 -1.2691 35 1 3.1713 -0.8747 -1.2688 36 1 3.3869 -3.3195 3.2652 37 1 2.7952 -3.1972 1.5883 38 1 4.9801 -3.9100 0.7208 39 1 4.4211 -5.0991 1.9220 40 1 5.8042 -3.9754 3.6594 41 1 7.2725 -4.7493 1.0994 42 1 8.0391 -4.6027 2.6991 43 1 6.0435 -8.6429 2.4359 44 1 6.6344 -8.5326 0.7442 45 1 7.5693 -10.5075 2.3389 46 1 8.7084 -9.6264 1.2770 47 1 9.0213 -12.6745 2.9238 48 1 9.4798 -7.0453 3.2775 49 1 8.0137 -7.2694 4.2719 50 1 6.7287 -2.2584 1.3108 51 1 7.4424 -2.2449 2.9420 52 1 5.7638 -0.4005 2.5798 53 1 5.3177 -1.4975 3.9104 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088235913.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:16 Heat of formation + Delta-G solvation = -56.914657 kcal Electronic energy + Delta-G solvation = -29250.362667 eV Core-core repulsion = 25315.388455 eV Total energy + Delta-G solvation = -3934.974212 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.46653 -40.03497 -39.02677 -37.72467 -37.22303 -34.67852 -33.87543 -32.16118 -31.09988 -29.73428 -29.05261 -28.20034 -26.35445 -25.41906 -24.35076 -23.36754 -22.09711 -21.90616 -21.75540 -21.07909 -19.77135 -18.97550 -18.47136 -17.86175 -17.14383 -16.76837 -16.53067 -16.15988 -16.08510 -15.54325 -15.48376 -15.30157 -15.16843 -14.55332 -14.50392 -14.27051 -14.09100 -13.89601 -13.85629 -13.63367 -13.55043 -13.30208 -13.01212 -12.94903 -12.88963 -12.63758 -12.42816 -12.31451 -12.24688 -12.22249 -12.05802 -11.81710 -11.63831 -11.56216 -11.51645 -11.32404 -11.27396 -10.94456 -10.77486 -10.75449 -10.41309 -9.70234 -8.91509 -7.78632 -5.23986 1.42613 1.46650 1.50068 1.56580 1.93210 2.46727 2.66522 2.84533 3.31490 3.42815 3.69904 3.71117 3.78539 3.80402 3.85468 3.87928 3.96527 4.08218 4.11518 4.13826 4.20053 4.34120 4.37270 4.42129 4.45075 4.54987 4.64970 4.66782 4.73870 4.78755 4.80336 4.84423 4.87333 4.88397 4.95056 4.97238 5.01556 5.03181 5.03875 5.06166 5.07471 5.21759 5.24288 5.42020 5.42328 5.44300 5.56116 5.61262 5.78153 6.27998 6.35847 6.38320 7.09045 7.11112 7.75563 8.39000 9.23064 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.028705 B = 0.001806 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.217693 B =15496.909187 C =16043.391410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.129 4.129 3 H 0.092 0.908 4 C -0.137 4.137 5 C -0.197 4.197 6 H 0.148 0.852 7 C 0.537 3.463 8 O -0.591 6.591 9 N -0.606 5.606 10 C 0.107 3.893 11 C -0.121 4.121 12 C -0.080 4.080 13 C 0.061 3.939 14 O -0.381 6.381 15 C 0.095 3.905 16 H 0.079 0.921 17 C -0.124 4.124 18 C 0.153 3.847 19 N -0.625 5.625 20 C -0.244 4.244 21 H 0.079 0.921 22 C -0.066 4.066 23 N -0.948 5.948 24 Si 0.983 3.017 25 H -0.277 1.277 26 H -0.291 1.291 27 H -0.278 1.278 28 C 0.115 3.885 29 C -0.118 4.118 30 C 0.111 3.889 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.130 0.870 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.065 0.935 44 H 0.091 0.909 45 H 0.077 0.923 46 H -0.006 1.006 47 H 0.249 0.751 48 H 0.023 0.977 49 H 0.026 0.974 50 H 0.064 0.936 51 H 0.088 0.912 52 H 0.078 0.922 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.238 21.893 -6.749 28.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.148 4.148 3 H 0.110 0.890 4 C -0.174 4.174 5 C -0.218 4.218 6 H 0.166 0.834 7 C 0.327 3.673 8 O -0.472 6.472 9 N -0.338 5.338 10 C -0.015 4.015 11 C -0.159 4.159 12 C -0.099 4.099 13 C -0.016 4.016 14 O -0.299 6.299 15 C 0.037 3.963 16 H 0.097 0.903 17 C -0.162 4.162 18 C 0.028 3.972 19 N -0.353 5.353 20 C -0.373 4.373 21 H 0.097 0.903 22 C -0.258 4.258 23 N -0.597 5.597 24 Si 0.811 3.189 25 H -0.203 1.203 26 H -0.217 1.217 27 H -0.204 1.204 28 C -0.011 4.011 29 C -0.156 4.156 30 C -0.011 4.011 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.148 0.852 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.126 0.874 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.109 0.891 45 H 0.095 0.905 46 H 0.012 0.988 47 H 0.059 0.941 48 H 0.041 0.959 49 H 0.044 0.956 50 H 0.083 0.917 51 H 0.107 0.893 52 H 0.096 0.904 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.118 22.239 -6.633 28.256 hybrid contribution 1.363 -0.681 0.656 1.659 sum -14.756 21.558 -5.976 26.800 Atomic orbital electron populations 1.21399 0.90330 1.03322 1.02564 1.22401 0.96572 0.94032 1.01766 0.89009 1.23174 1.02847 1.01576 0.89820 1.22403 0.96716 1.06153 0.96523 0.83439 1.20243 0.85480 0.83811 0.77715 1.90652 1.70095 1.22857 1.63598 1.48181 1.23494 1.11045 1.51038 1.22073 0.97281 0.78913 1.03191 1.21934 0.94469 0.99899 0.99603 1.21080 0.94772 0.92892 1.01109 1.22714 0.97454 0.81969 0.99417 1.87882 1.43295 1.15095 1.83671 1.22900 0.90174 0.88296 0.94949 0.90288 1.22953 0.98276 0.93306 1.01689 1.21752 0.91150 0.97390 0.86909 1.44694 1.61088 1.02111 1.27360 1.19415 1.24758 0.89863 1.03272 0.90343 1.25662 1.02280 0.97512 1.00379 1.70019 1.49188 1.08997 1.31534 0.85090 0.78339 0.77248 0.78260 1.20311 1.21652 1.20430 1.21834 0.96693 0.85019 0.97579 1.21807 0.98536 0.92948 1.02318 1.21588 0.83119 0.99424 0.96973 0.90779 0.91203 0.91838 0.85159 0.89585 0.90114 0.87410 0.91660 0.89889 0.90331 0.92666 0.93366 0.91609 0.89073 0.90475 0.98783 0.94138 0.95944 0.95618 0.91730 0.89326 0.90382 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 10.19 71.98 0.73 -0.28 16 2 C -0.13 -1.76 5.92 -10.79 -0.06 -1.82 16 3 H 0.09 1.71 7.67 -2.39 -0.02 1.69 16 4 C -0.14 -1.59 9.88 30.59 0.30 -1.29 16 5 C -0.20 -2.72 4.69 -11.54 -0.05 -2.78 16 6 H 0.15 1.31 6.81 -2.39 -0.02 1.29 16 7 C 0.54 11.14 7.48 87.66 0.66 11.79 16 8 O -0.59 -17.08 15.67 -3.04 -0.05 -17.13 16 9 N -0.61 -10.43 2.97 -818.15 -2.43 -12.85 16 10 C 0.11 1.36 6.33 86.51 0.55 1.90 16 11 C -0.12 -1.88 5.29 30.82 0.16 -1.72 16 12 C -0.08 -1.41 2.39 -10.76 -0.03 -1.44 16 13 C 0.06 1.35 5.15 71.98 0.37 1.72 16 14 O -0.38 -11.29 9.58 -148.98 -1.43 -12.72 16 15 C 0.10 3.29 3.45 31.78 0.11 3.39 16 16 H 0.08 2.47 7.82 -2.39 -0.02 2.45 16 17 C -0.12 -4.65 6.81 31.98 0.22 -4.43 16 18 C 0.15 7.59 5.89 86.85 0.51 8.10 16 19 N -0.63 -33.09 3.39 -692.01 -2.35 -35.44 16 20 C -0.24 -13.98 10.27 84.03 0.86 -13.12 16 21 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 22 C -0.07 -3.76 5.49 84.86 0.47 -3.29 16 23 N -0.95 -56.47 10.09 21.65 0.22 -56.26 16 24 Si 0.98 45.74 29.55 68.60 2.03 47.76 16 25 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 26 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 27 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 28 C 0.11 4.90 7.02 86.73 0.61 5.51 16 29 C -0.12 -1.85 5.36 30.66 0.16 -1.69 16 30 C 0.11 1.91 6.43 86.35 0.55 2.46 16 31 H 0.07 0.42 7.90 -2.39 -0.02 0.41 16 32 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.13 0.87 8.05 -2.39 -0.02 0.85 16 35 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.11 0.94 5.66 -2.39 -0.01 0.93 16 38 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.08 1.43 7.79 -2.39 -0.02 1.42 16 40 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.06 1.13 8.11 -2.39 -0.02 1.11 16 42 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 44 H 0.09 2.87 8.14 -2.38 -0.02 2.85 16 45 H 0.08 4.35 5.87 -2.39 -0.01 4.33 16 46 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 47 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 48 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.03 1.13 8.06 -2.39 -0.02 1.11 16 50 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 52 H 0.08 1.60 7.01 -2.38 -0.02 1.58 16 53 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -71.75 411.46 2.98 -68.77 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.86 Total: 14.83 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: 6.12 Total: 3.03 kcal Atomic # 7 Polarization: -99.99 SS G_CDS: -4.56 Total: -104.55 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -1.47 Total: -29.84 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -71.75 2.98 -68.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088235913.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.858 kcal (2) G-P(sol) polarization free energy of solvation -71.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds