Wall clock time and date at job start Tue Mar 31 2020 21:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.99939 * 2 1 4 4 C 1.54337 * 109.99231 * 238.96737 * 2 1 3 5 5 H 1.09003 * 110.51415 * 336.97294 * 4 2 1 6 6 N 1.46496 * 110.85221 * 100.19782 * 4 2 1 7 7 C 1.34780 * 119.99578 * 200.14680 * 6 4 2 8 8 O 1.21282 * 120.00592 * 0.02562 * 7 6 4 9 9 C 1.50704 * 119.99600 * 179.97438 * 7 6 4 10 10 C 1.52996 * 112.84941 * 185.68626 * 9 7 6 11 11 H 1.09000 * 109.48478 * 185.44714 * 10 9 7 12 12 C 1.53097 * 109.48122 * 65.42243 * 10 9 7 13 13 C 1.53175 * 109.16542 * 182.40901 * 12 10 9 14 14 C 1.53170 * 109.03760 * 56.97993 * 13 12 10 15 15 C 1.53095 * 109.16432 * 303.02401 * 14 13 12 16 16 O 1.42895 * 109.42580 * 57.59881 * 15 14 13 17 17 C 1.53781 * 113.61292 * 54.49448 * 9 7 6 18 18 C 1.53950 * 87.02075 * 220.04526 * 17 9 7 19 19 C 1.53775 * 113.61732 * 316.88867 * 9 7 6 20 20 C 1.55158 * 103.01843 * 218.66529 * 4 2 1 21 21 C 1.54912 * 101.58190 * 35.30543 * 20 4 2 22 22 N 1.47024 * 109.88298 * 121.09620 * 2 1 3 23 23 C 1.36933 * 125.65234 * 298.39646 * 22 2 1 24 24 H 1.08000 * 119.99224 * 341.99970 * 23 22 2 25 25 C 1.38805 * 120.00530 * 161.99980 * 23 22 2 26 26 N 1.31613 * 120.00194 * 158.84274 * 25 23 22 27 27 Si 1.86803 * 119.99709 * 338.84038 * 25 23 22 28 28 H 1.48504 * 109.47085 * 89.99955 * 27 25 23 29 29 H 1.48499 * 109.47116 * 329.99998 * 27 25 23 30 30 H 1.48498 * 109.47219 * 209.99881 * 27 25 23 31 31 H 1.09002 * 109.47325 * 300.35273 * 1 2 3 32 32 H 1.09006 * 109.47365 * 60.35909 * 1 2 3 33 33 H 1.09001 * 109.47606 * 180.35735 * 1 2 3 34 34 H 0.96993 * 120.00098 * 20.14081 * 6 4 2 35 35 H 1.09004 * 109.52225 * 302.31749 * 12 10 9 36 36 H 1.09007 * 109.52173 * 62.49976 * 12 10 9 37 37 H 1.08998 * 109.54446 * 176.84992 * 13 12 10 38 38 H 1.09000 * 109.54001 * 297.02208 * 13 12 10 39 39 H 1.09002 * 109.52142 * 62.92655 * 14 13 12 40 40 H 1.08999 * 109.52383 * 183.11594 * 14 13 12 41 41 H 1.09001 * 109.48187 * 177.59810 * 15 14 13 42 42 H 1.09007 * 109.47718 * 297.60707 * 15 14 13 43 43 H 1.09007 * 113.61396 * 334.56752 * 17 9 7 44 44 H 1.09003 * 113.61855 * 105.46468 * 17 9 7 45 45 H 1.08999 * 113.53704 * 270.81283 * 18 17 9 46 46 H 1.08994 * 113.74534 * 139.94096 * 18 17 9 47 47 H 1.09000 * 113.61482 * 254.52966 * 19 9 7 48 48 H 1.08994 * 113.61578 * 25.34357 * 19 9 7 49 49 H 1.08999 * 111.00497 * 277.22476 * 20 4 2 50 50 H 1.09006 * 111.03635 * 153.39123 * 20 4 2 51 51 H 1.09001 * 110.36001 * 204.14812 * 21 20 4 52 52 H 1.08999 * 110.45911 * 81.87862 * 21 20 4 53 53 H 0.97003 * 120.00052 * 5.06582 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0576 -0.7477 -1.2428 5 1 1.3052 -1.4406 -1.6198 6 7 2.4636 0.1969 -2.2863 7 6 2.5638 -0.2146 -3.5658 8 8 2.3173 -1.3668 -3.8534 9 6 2.9810 0.7573 -4.6394 10 6 2.9078 0.1574 -6.0449 11 1 3.3105 0.8692 -6.7655 12 6 1.4492 -0.1514 -6.3929 13 6 1.3901 -0.8067 -7.7762 14 6 2.2652 -2.0638 -7.7713 15 6 3.6922 -1.6813 -7.3700 16 8 3.6723 -1.0491 -6.0886 17 6 4.3110 1.4698 -4.3423 18 6 3.6615 2.7456 -4.9085 19 6 2.3051 2.1335 -4.5210 20 6 3.2863 -1.5183 -0.6915 21 6 2.8098 -1.8825 0.7368 22 7 2.0299 -0.7141 1.1839 23 6 1.8038 -0.3565 2.4863 24 1 1.4760 0.6452 2.7220 25 6 1.9958 -1.2814 3.5034 26 7 2.1911 -0.8704 4.7383 27 14 1.9769 -3.1094 3.1193 28 1 3.3526 -3.5598 2.7878 29 1 1.0808 -3.3629 1.9626 30 1 1.4823 -3.8587 4.3021 31 1 -0.3634 0.5193 0.8868 32 1 -0.3634 0.5083 -0.8932 33 1 -0.3634 -1.0276 0.0064 34 1 2.6603 1.1185 -2.0564 35 1 1.0335 -0.8316 -5.6495 36 1 0.8734 0.7741 -6.4034 37 1 0.3604 -1.0801 -8.0065 38 1 1.7583 -0.1074 -8.5269 39 1 1.8660 -2.7827 -7.0557 40 1 2.2731 -2.5061 -8.7675 41 1 4.3096 -2.5784 -7.3233 42 1 4.1054 -0.9938 -8.1081 43 1 4.5443 1.5334 -3.2794 44 1 5.1461 1.1022 -4.9386 45 1 3.7966 2.8624 -5.9837 46 1 3.9084 3.6486 -4.3503 47 1 1.5229 2.3009 -5.2615 48 1 1.9876 2.3783 -3.5074 49 1 4.1669 -0.8768 -0.6580 50 1 3.4813 -2.4155 -1.2790 51 1 3.6655 -2.0412 1.3931 52 1 2.1806 -2.7722 0.7132 53 1 2.1280 0.0740 4.9509 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088740993.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:17 Heat of formation + Delta-G solvation = -64.425819 kcal Electronic energy + Delta-G solvation = -31491.515442 eV Core-core repulsion = 27556.215522 eV Total energy + Delta-G solvation = -3935.299920 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.05966 -40.31366 -39.21196 -38.38339 -35.61076 -34.50109 -34.06337 -32.29005 -31.99203 -30.99423 -27.95037 -26.80383 -26.44640 -25.55227 -25.02743 -24.06725 -22.80801 -21.84618 -21.36818 -21.09976 -19.76669 -19.35062 -18.40309 -17.64669 -17.02255 -16.88837 -16.57619 -16.05869 -15.88378 -15.56019 -15.52442 -15.36976 -15.23802 -15.20033 -14.92283 -14.51083 -14.25074 -13.67827 -13.66075 -13.55532 -13.34572 -13.30557 -13.11147 -13.06519 -12.86335 -12.59278 -12.40076 -12.35331 -12.31903 -12.06976 -11.87557 -11.80978 -11.73120 -11.51528 -11.44012 -11.29144 -11.24760 -10.99997 -10.70771 -10.43170 -10.17087 -9.96786 -9.15058 -8.57771 -5.47029 1.40455 1.51354 1.67132 1.70329 2.12970 2.51000 2.78104 3.08512 3.31117 3.45504 3.56762 3.65079 3.75246 3.82314 3.88810 3.94169 4.01703 4.03053 4.10139 4.15136 4.23403 4.27656 4.35468 4.42398 4.49530 4.52584 4.55077 4.71008 4.72035 4.75844 4.76957 4.81634 4.85284 4.87824 4.96705 4.97183 5.03868 5.05752 5.08291 5.13048 5.14319 5.16806 5.19468 5.23807 5.32662 5.45385 5.47498 5.56994 5.67118 6.14136 6.43361 6.64610 6.82734 7.37866 7.47548 8.13729 8.88799 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018811 B = 0.003073 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.095635 B = 9109.453421 C = 9686.031960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.151 3.849 3 H 0.049 0.951 4 C 0.155 3.845 5 H 0.082 0.918 6 N -0.710 5.710 7 C 0.526 3.474 8 O -0.559 6.559 9 C -0.103 4.103 10 C 0.131 3.869 11 H 0.085 0.915 12 C -0.154 4.154 13 C -0.117 4.117 14 C -0.154 4.154 15 C 0.057 3.943 16 O -0.390 6.390 17 C -0.125 4.125 18 C -0.124 4.124 19 C -0.121 4.121 20 C -0.126 4.126 21 C 0.099 3.901 22 N -0.618 5.618 23 C -0.300 4.300 24 H 0.048 0.952 25 C -0.073 4.073 26 N -0.961 5.961 27 Si 1.100 2.900 28 H -0.276 1.276 29 H -0.270 1.270 30 H -0.306 1.306 31 H 0.039 0.961 32 H 0.073 0.927 33 H 0.040 0.960 34 H 0.408 0.592 35 H 0.050 0.950 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.045 0.955 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.098 0.902 46 H 0.089 0.911 47 H 0.091 0.909 48 H 0.094 0.906 49 H 0.077 0.923 50 H 0.078 0.922 51 H 0.047 0.953 52 H 0.032 0.968 53 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.013 7.120 -30.817 31.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.044 3.956 3 H 0.067 0.933 4 C 0.049 3.951 5 H 0.100 0.900 6 N -0.363 5.363 7 C 0.314 3.686 8 O -0.436 6.436 9 C -0.106 4.106 10 C 0.073 3.927 11 H 0.102 0.898 12 C -0.191 4.191 13 C -0.154 4.154 14 C -0.192 4.192 15 C -0.019 4.019 16 O -0.309 6.309 17 C -0.163 4.163 18 C -0.161 4.161 19 C -0.158 4.158 20 C -0.166 4.166 21 C -0.026 4.026 22 N -0.345 5.345 23 C -0.429 4.429 24 H 0.066 0.934 25 C -0.267 4.267 26 N -0.605 5.605 27 Si 0.927 3.073 28 H -0.202 1.202 29 H -0.195 1.195 30 H -0.235 1.235 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.245 0.755 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.064 0.936 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.084 0.916 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.116 0.884 46 H 0.107 0.893 47 H 0.110 0.890 48 H 0.113 0.887 49 H 0.096 0.904 50 H 0.096 0.904 51 H 0.065 0.935 52 H 0.049 0.951 53 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.120 4.775 -30.137 30.586 hybrid contribution -0.487 1.666 0.281 1.758 sum 1.633 6.441 -29.856 30.586 Atomic orbital electron populations 1.22087 0.96486 1.00976 1.00974 1.21231 0.93416 0.95236 0.85670 0.93290 1.21638 0.95900 0.91013 0.86584 0.89951 1.45865 1.69894 1.13964 1.06557 1.20755 0.76036 0.88740 0.83117 1.90679 1.49725 1.20812 1.82354 1.22289 1.01231 0.94229 0.92859 1.21602 0.91394 0.86427 0.93309 0.89766 1.22239 0.97079 1.01762 0.98063 1.21555 1.00448 0.96990 0.96423 1.22148 0.96467 0.98428 1.02150 1.22663 0.96476 0.97769 0.84994 1.88022 1.71136 1.39379 1.32361 1.23014 0.94721 0.96249 1.02281 1.22888 0.93883 0.96931 1.02372 1.23080 0.98554 0.90385 1.03812 1.23001 0.98198 1.00843 0.94524 1.22114 0.94580 0.90790 0.95124 1.44882 1.58786 1.29682 1.01178 1.19856 1.44736 0.95951 0.82338 0.93422 1.26960 0.99034 1.08272 0.92420 1.71006 1.51248 1.17030 1.21224 0.83377 0.77685 0.72199 0.74038 1.20213 1.19534 1.23454 0.94228 0.90771 0.94083 0.75478 0.93165 0.89629 0.91293 0.90047 0.93578 0.89258 0.89223 0.91588 0.89643 0.90638 0.88394 0.89259 0.89033 0.88722 0.90432 0.90374 0.93523 0.95059 0.94108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.24 9.14 71.98 0.66 -4.58 16 2 C 0.15 5.71 3.48 45.34 0.16 5.87 16 3 H 0.05 1.78 7.69 -2.39 -0.02 1.76 16 4 C 0.15 5.14 2.76 46.19 0.13 5.27 16 5 H 0.08 2.98 7.40 -2.39 -0.02 2.96 16 6 N -0.71 -18.53 4.83 -436.89 -2.11 -20.64 16 7 C 0.53 14.34 6.63 87.66 0.58 14.92 16 8 O -0.56 -19.91 13.63 15.36 0.21 -19.70 16 9 C -0.10 -1.94 0.63 -52.40 -0.03 -1.97 16 10 C 0.13 2.46 1.91 30.63 0.06 2.51 16 11 H 0.08 1.17 7.32 -2.39 -0.02 1.15 16 12 C -0.15 -2.87 5.07 30.69 0.16 -2.71 16 13 C -0.12 -1.75 6.03 30.71 0.19 -1.56 16 14 C -0.15 -2.61 6.14 30.68 0.19 -2.42 16 15 C 0.06 1.03 6.84 72.01 0.49 1.52 16 16 O -0.39 -9.58 9.11 -130.59 -1.19 -10.77 16 17 C -0.12 -1.93 7.12 31.18 0.22 -1.71 16 18 C -0.12 -1.19 7.74 31.18 0.24 -0.95 16 19 C -0.12 -1.50 6.91 31.12 0.22 -1.28 16 20 C -0.13 -4.49 6.77 31.99 0.22 -4.27 16 21 C 0.10 4.32 4.70 86.86 0.41 4.73 16 22 N -0.62 -29.60 2.95 -668.26 -1.97 -31.57 16 23 C -0.30 -17.12 10.05 84.03 0.84 -16.28 16 24 H 0.05 2.92 8.06 -2.91 -0.02 2.89 16 25 C -0.07 -4.35 5.44 84.86 0.46 -3.88 16 26 N -0.96 -61.88 13.70 21.65 0.30 -61.59 16 27 Si 1.10 55.16 24.70 68.60 1.69 56.86 16 28 H -0.28 -12.93 6.74 99.48 0.67 -12.26 16 29 H -0.27 -12.68 6.14 99.48 0.61 -12.07 16 30 H -0.31 -15.58 7.11 99.48 0.71 -14.88 16 31 H 0.04 1.55 8.02 -2.39 -0.02 1.53 16 32 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.41 8.61 6.66 -92.71 -0.62 8.00 16 35 H 0.05 1.33 6.44 -2.38 -0.02 1.32 16 36 H 0.09 1.23 6.85 -2.38 -0.02 1.21 16 37 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 40 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 43 H 0.09 1.38 7.59 -2.38 -0.02 1.36 16 44 H 0.07 1.24 8.10 -2.39 -0.02 1.22 16 45 H 0.10 0.70 7.61 -2.39 -0.02 0.68 16 46 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.09 0.92 6.79 -2.39 -0.02 0.91 16 48 H 0.09 1.15 6.88 -2.39 -0.02 1.13 16 49 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 50 H 0.08 2.68 8.14 -2.38 -0.02 2.67 16 51 H 0.05 2.16 6.59 -2.39 -0.02 2.15 16 52 H 0.03 1.41 5.31 -2.39 -0.01 1.39 16 53 H 0.25 16.05 8.73 -92.71 -0.81 15.24 16 Total: -1.00 -74.90 391.89 2.21 -72.68 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.10 Total: 21.53 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 5.18 Total: -6.81 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -3.79 Total: -113.80 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.98 Total: -30.47 kcal Atomic # 14 Polarization: 55.16 SS G_CDS: 1.69 Total: 56.86 kcal Total: -74.90 2.21 -72.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088740993.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.259 kcal (2) G-P(sol) polarization free energy of solvation -74.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds